Wall clock time and date at job start Tue Mar 31 2020 16:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99776 * 2 1 4 4 N 1.46505 * 109.46648 * 125.00755 * 3 2 1 5 5 C 1.34775 * 119.99891 * 180.02562 * 4 3 2 6 6 O 1.21590 * 119.99839 * 359.97438 * 5 4 3 7 7 C 1.47593 * 120.00035 * 180.02562 * 5 4 3 8 8 C 1.39753 * 120.07251 * 179.97438 * 7 5 4 9 9 C 1.37672 * 119.92133 * 180.02562 * 8 7 5 10 10 C 1.39122 * 120.07755 * 0.02562 * 9 8 7 11 11 N 1.39442 * 119.92985 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00379 * 146.57159 * 11 10 9 13 13 O 1.21277 * 120.00018 * 354.73401 * 12 11 10 14 14 C 1.50697 * 119.99803 * 174.72457 * 12 11 10 15 15 H 1.08997 * 109.47426 * 40.00824 * 14 12 11 16 16 N 1.46907 * 109.46891 * 160.00610 * 14 12 11 17 17 C 1.52998 * 109.47307 * 280.00196 * 14 12 11 18 18 C 1.53005 * 109.47099 * 175.00024 * 17 14 12 19 19 C 1.50703 * 109.47085 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99730 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99739 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00125 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99593 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47203 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47047 * 120.00242 * 23 21 19 26 26 H 1.48500 * 109.46728 * 240.00054 * 23 21 19 27 27 C 1.39134 * 120.14938 * 0.22997 * 10 9 8 28 28 C 1.37669 * 120.07155 * 359.48827 * 27 10 9 29 29 H 1.07989 * 120.00227 * 359.97438 * 1 2 3 30 30 H 1.08007 * 119.99714 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00086 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47087 * 5.00883 * 3 2 1 33 33 H 1.08990 * 109.47146 * 245.00305 * 3 2 1 34 34 H 0.97004 * 119.99870 * 359.97438 * 4 3 2 35 35 H 1.07993 * 120.04044 * 359.97438 * 8 7 5 36 36 H 1.08004 * 119.95663 * 180.02562 * 9 8 7 37 37 H 0.97003 * 119.99613 * 326.58122 * 11 10 9 38 38 H 1.00905 * 110.99347 * 296.04692 * 16 14 12 39 39 H 1.00896 * 111.00019 * 59.99503 * 16 14 12 40 40 H 1.09003 * 109.47474 * 295.00366 * 17 14 12 41 41 H 1.08997 * 109.47259 * 55.00434 * 17 14 12 42 42 H 1.08994 * 109.47208 * 300.00395 * 18 17 14 43 43 H 1.09009 * 109.46546 * 60.00500 * 18 17 14 44 44 H 0.96997 * 120.00139 * 180.02562 * 22 21 19 45 45 H 1.08001 * 119.96479 * 179.72151 * 27 10 9 46 46 H 1.08004 * 120.04153 * 180.23003 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 3.7784 2.4089 1.3335 6 8 3.7143 3.3583 0.5765 7 6 4.7161 2.4355 2.4729 8 6 5.5306 3.5514 2.6836 9 6 6.4046 3.5727 3.7471 10 6 6.4778 2.4849 4.6113 11 7 7.3645 2.5096 5.6873 12 6 7.0398 1.8957 6.8423 13 8 5.9395 1.4044 6.9795 14 6 8.0441 1.8196 7.9633 15 1 8.5826 2.7646 8.0335 16 7 7.3460 1.5585 9.2293 17 6 9.0348 0.6875 7.6845 18 6 10.1265 0.6896 8.7566 19 6 11.1020 -0.4259 8.4823 20 1 10.9580 -1.0714 7.6285 21 6 12.1789 -0.6216 9.3208 22 7 12.3545 0.1648 10.3602 23 14 13.3885 -2.0038 8.9804 24 1 12.9694 -2.7390 7.7601 25 1 14.7448 -1.4352 8.7750 26 1 13.4124 -2.9363 10.1358 27 6 5.6721 1.3702 4.4014 28 6 4.7918 1.3447 3.3432 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6212 1.4027 -0.9313 34 1 3.0447 0.5745 1.7355 35 1 5.4752 4.3956 2.0124 36 1 7.0341 4.4350 3.9107 37 1 8.2149 2.9688 5.6044 38 1 6.7327 2.3233 9.4683 39 1 6.8388 0.6872 9.1895 40 1 8.5098 -0.2675 7.7024 41 1 9.4881 0.8346 6.7042 42 1 10.6515 1.6446 8.7387 43 1 9.6731 0.5424 9.7369 44 1 13.1123 0.0273 10.9498 45 1 5.7346 0.5256 5.0716 46 1 4.1640 0.4807 3.1829 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424095146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:00 Heat of formation + Delta-G solvation = -58.765199 kcal Electronic energy + Delta-G solvation = -26584.064331 eV Core-core repulsion = 22665.518398 eV Total energy + Delta-G solvation = -3918.545933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90966 -41.02205 -39.30647 -36.90622 -36.81613 -35.97534 -34.82375 -33.89066 -32.05473 -31.91429 -31.16682 -28.32017 -27.27946 -25.77160 -24.09116 -23.96516 -22.38471 -21.70068 -21.18336 -20.94122 -19.18899 -18.82878 -18.40947 -18.12618 -17.41470 -16.96859 -16.67656 -16.50388 -16.20552 -16.06416 -15.80276 -15.48207 -15.25205 -15.03255 -14.80837 -14.44594 -14.27504 -14.19368 -13.85541 -13.80003 -13.69729 -13.42291 -13.35674 -12.82649 -12.53436 -12.36563 -12.25804 -12.07304 -11.79300 -11.69051 -11.46135 -11.30374 -11.21309 -10.98495 -10.59425 -10.48497 -10.14050 -10.08977 -9.67815 -9.26256 -8.13339 -6.22943 -0.33887 0.32174 1.14263 1.27061 1.41906 1.43413 1.55011 1.82682 1.94345 2.29336 2.45021 2.80488 3.20295 3.46211 3.64950 3.69991 3.79216 3.87026 3.89110 4.08366 4.13741 4.22259 4.28860 4.36389 4.44350 4.53649 4.70603 4.78066 4.90627 4.93663 4.97907 5.04335 5.18507 5.22038 5.26151 5.29106 5.34427 5.59061 5.62901 5.74491 5.82152 5.86172 6.00236 6.06216 6.29361 6.31262 6.42780 6.51111 6.93795 6.96421 7.09463 7.45295 8.97831 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.001891 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.853325 B =14806.210996 C =15236.464797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.185 4.185 3 C 0.145 3.855 4 N -0.713 5.713 5 C 0.561 3.439 6 O -0.579 6.579 7 C -0.171 4.171 8 C -0.043 4.043 9 C -0.150 4.150 10 C 0.169 3.831 11 N -0.661 5.661 12 C 0.492 3.508 13 O -0.551 6.551 14 C 0.089 3.911 15 H 0.117 0.883 16 N -0.818 5.818 17 C -0.083 4.083 18 C 0.037 3.963 19 C -0.542 4.542 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.929 5.929 23 Si 0.957 3.043 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.282 1.282 27 C -0.148 4.148 28 C -0.055 4.055 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.413 0.587 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.429 0.571 38 H 0.348 0.652 39 H 0.347 0.653 40 H 0.045 0.955 41 H 0.069 0.931 42 H -0.004 1.004 43 H 0.007 0.993 44 H 0.261 0.739 45 H 0.127 0.873 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.228 3.682 -19.207 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.203 4.203 3 C 0.022 3.978 4 N -0.366 5.366 5 C 0.350 3.650 6 O -0.461 6.461 7 C -0.175 4.175 8 C -0.062 4.062 9 C -0.170 4.170 10 C 0.073 3.927 11 N -0.307 5.307 12 C 0.279 3.721 13 O -0.428 6.428 14 C -0.027 4.027 15 H 0.135 0.865 16 N -0.347 5.347 17 C -0.121 4.121 18 C 0.000 4.000 19 C -0.580 4.580 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.782 3.218 24 H -0.188 1.188 25 H -0.205 1.205 26 H -0.208 1.208 27 C -0.168 4.168 28 C -0.074 4.074 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.251 0.749 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.269 0.731 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.015 0.985 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.144 0.856 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.188 3.976 -19.097 28.072 hybrid contribution 0.334 -0.716 -0.128 0.800 sum -19.854 3.260 -19.225 27.828 Atomic orbital electron populations 1.24188 0.95646 1.03312 0.96456 1.22959 0.96435 0.97424 1.03497 1.20473 0.91478 0.96751 0.89052 1.45873 1.40087 1.19550 1.31053 1.18368 0.80104 0.82236 0.84250 1.90752 1.69931 1.36857 1.48551 1.19881 1.01725 0.97739 0.98108 1.21183 0.92112 0.97110 0.95814 1.21101 1.01964 0.97802 0.96116 1.18248 0.92227 0.93984 0.88250 1.43665 1.21278 1.54715 1.10996 1.22726 0.89129 0.75909 0.84303 1.90667 1.23864 1.46477 1.81788 1.21680 0.93057 1.02384 0.85550 0.86515 1.58963 1.37679 1.08671 1.29399 1.21409 0.95204 0.95477 1.00004 1.18850 0.91927 0.94896 0.94325 1.21769 1.09734 1.15660 1.10839 0.92585 1.25867 0.99955 0.98766 0.94975 1.70099 1.30662 1.40045 1.16094 0.85523 0.78760 0.79230 0.78258 1.18809 1.20451 1.20808 1.21130 0.98760 0.97955 0.98995 1.21286 0.96529 0.97522 0.92075 0.88105 0.86260 0.85309 0.91673 0.91147 0.74881 0.83929 0.82268 0.73131 0.83819 0.83897 0.93593 0.91238 0.98524 0.97443 0.92991 0.85554 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 14.32 67.78 0.97 -0.18 16 2 C -0.18 -1.60 9.63 25.64 0.25 -1.35 16 3 C 0.15 1.96 6.11 85.63 0.52 2.48 16 4 N -0.71 -10.68 5.50 -469.94 -2.58 -13.26 16 5 C 0.56 12.09 7.76 86.71 0.67 12.77 16 6 O -0.58 -16.51 16.34 -4.00 -0.07 -16.57 16 7 C -0.17 -3.44 5.88 -20.08 -0.12 -3.56 16 8 C -0.04 -0.84 9.58 22.50 0.22 -0.62 16 9 C -0.15 -2.68 9.94 22.35 0.22 -2.45 16 10 C 0.17 3.64 6.27 38.36 0.24 3.88 16 11 N -0.66 -13.85 5.32 -303.50 -1.61 -15.47 16 12 C 0.49 13.09 6.79 87.66 0.60 13.69 16 13 O -0.55 -17.31 13.94 -3.02 -0.04 -17.35 16 14 C 0.09 2.60 3.15 44.17 0.14 2.74 16 15 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 16 N -0.82 -24.87 8.44 -171.80 -1.45 -26.32 16 17 C -0.08 -3.04 4.78 30.60 0.15 -2.89 16 18 C 0.04 1.84 4.86 29.85 0.15 1.98 16 19 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 20 H 0.06 2.97 7.74 -2.91 -0.02 2.94 16 21 C 0.00 0.13 5.46 84.66 0.46 0.59 16 22 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 23 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 C -0.15 -3.37 8.63 22.35 0.19 -3.17 16 28 C -0.05 -1.01 9.53 22.50 0.21 -0.79 16 29 H 0.10 0.72 7.84 -2.92 -0.02 0.70 16 30 H 0.12 0.53 8.06 -2.91 -0.02 0.51 16 31 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.41 4.13 6.48 -92.71 -0.60 3.53 16 35 H 0.14 2.67 7.64 -2.91 -0.02 2.65 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.43 6.66 8.81 -92.71 -0.82 5.84 16 38 H 0.35 8.96 9.06 -89.69 -0.81 8.15 16 39 H 0.35 10.76 8.58 -89.70 -0.77 9.99 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.01 0.39 7.75 -2.38 -0.02 0.37 16 44 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.13 3.28 6.42 -2.91 -0.02 3.26 16 46 H 0.15 1.82 6.39 -2.91 -0.02 1.80 16 Total: -1.00 -73.70 393.20 -0.30 -74.00 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -1.96 Total: 30.91 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.10 Total: -6.41 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -5.36 Total: -110.14 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.11 Total: -33.92 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -73.70 -0.30 -74.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.237 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds