Wall clock time and date at job start Tue Mar 31 2020 16:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00074 * 2 1 4 4 N 1.46498 * 109.47115 * 125.00276 * 3 2 1 5 5 C 1.34785 * 119.99832 * 180.02562 * 4 3 2 6 6 O 1.21577 * 120.00132 * 0.02562 * 5 4 3 7 7 C 1.47600 * 119.99561 * 180.02562 * 5 4 3 8 8 C 1.39748 * 120.07019 * 180.02562 * 7 5 4 9 9 C 1.37669 * 119.92330 * 180.02562 * 8 7 5 10 10 C 1.39136 * 120.07465 * 0.25923 * 9 8 7 11 11 N 1.39441 * 119.92445 * 179.74140 * 10 9 8 12 12 C 1.34773 * 120.00043 * 213.43109 * 11 10 9 13 13 O 1.21283 * 119.99928 * 5.27508 * 12 11 10 14 14 C 1.50701 * 120.00227 * 185.27865 * 12 11 10 15 15 H 1.09000 * 109.47045 * 320.00012 * 14 12 11 16 16 N 1.46895 * 109.46870 * 199.99717 * 14 12 11 17 17 C 1.52999 * 109.47056 * 79.99750 * 14 12 11 18 18 C 1.52997 * 109.47253 * 184.99958 * 17 14 12 19 19 C 1.50698 * 109.47526 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99892 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00317 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99776 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00164 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47316 * 90.00247 * 23 21 19 25 25 H 1.48502 * 109.47085 * 210.00515 * 23 21 19 26 26 H 1.48502 * 109.47360 * 330.00373 * 23 21 19 27 27 C 1.39127 * 120.14584 * 359.48339 * 10 9 8 28 28 C 1.37671 * 120.07495 * 0.51082 * 27 10 9 29 29 H 1.07999 * 120.00024 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00285 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99734 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47588 * 5.00304 * 3 2 1 33 33 H 1.09003 * 109.47411 * 245.00326 * 3 2 1 34 34 H 0.96991 * 120.00117 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.03770 * 359.97438 * 8 7 5 36 36 H 1.07999 * 119.96009 * 179.97438 * 9 8 7 37 37 H 0.96998 * 119.99739 * 33.43453 * 11 10 9 38 38 H 1.00899 * 110.99716 * 176.04599 * 16 14 12 39 39 H 1.00897 * 111.00750 * 299.99700 * 16 14 12 40 40 H 1.09001 * 109.47396 * 305.00083 * 17 14 12 41 41 H 1.09005 * 109.47253 * 65.00149 * 17 14 12 42 42 H 1.09001 * 109.47022 * 300.00355 * 18 17 14 43 43 H 1.09005 * 109.46835 * 59.99935 * 18 17 14 44 44 H 0.96998 * 119.99944 * 180.02562 * 22 21 19 45 45 H 1.08005 * 119.96492 * 180.25717 * 27 10 9 46 46 H 1.08002 * 120.03589 * 179.71747 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 3.7783 2.4090 1.3334 6 8 3.7136 3.3586 0.5770 7 6 4.7160 2.4356 2.4730 8 6 5.5297 3.5519 2.6842 9 6 6.4036 3.5734 3.7477 10 6 6.4810 2.4831 4.6087 11 7 7.3711 2.5059 5.6818 12 6 7.9608 1.3658 6.0925 13 8 7.7926 0.3380 5.4709 14 6 8.8292 1.3679 7.3242 15 1 9.4304 2.2769 7.3433 16 7 9.7142 0.1957 7.3012 17 6 7.9450 1.3150 8.5717 18 6 8.8181 1.4426 9.8215 19 6 7.9472 1.3912 11.0502 20 1 6.8778 1.2782 10.9498 21 6 8.5156 1.4872 12.3027 22 7 9.8178 1.6242 12.4251 23 14 7.4360 1.4227 13.8258 24 1 7.2925 0.0135 14.2715 25 1 8.0604 2.2235 14.9093 26 1 6.0969 1.9799 13.5073 27 6 5.6684 1.3724 4.4043 28 6 4.7923 1.3445 3.3428 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 3.0451 0.5744 1.7350 35 1 5.4737 4.3965 2.0134 36 1 7.0331 4.4356 3.9113 37 1 7.5658 3.3424 6.1326 38 1 10.3512 0.2082 8.0837 39 1 9.1804 -0.6603 7.2833 40 1 7.2280 2.1355 8.5440 41 1 7.4098 0.3657 8.5978 42 1 9.5351 0.6221 9.8492 43 1 9.3532 2.3919 9.7954 44 1 10.2177 1.6914 13.3062 45 1 5.7280 0.5294 5.0768 46 1 4.1650 0.4801 3.1821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424095150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:04 Heat of formation + Delta-G solvation = -35.131897 kcal Electronic energy + Delta-G solvation = -26585.156448 eV Core-core repulsion = 22667.635332 eV Total energy + Delta-G solvation = -3917.521116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85431 -40.03002 -38.30285 -36.18142 -35.69267 -34.87629 -33.25302 -32.94143 -31.17940 -30.28097 -29.99472 -27.12908 -26.30346 -24.42810 -23.13917 -22.97255 -21.08688 -20.82959 -20.34967 -19.91011 -18.31877 -17.76793 -17.42676 -16.63447 -16.30481 -15.92478 -15.48827 -15.15964 -14.83033 -14.79488 -14.62623 -14.46386 -14.33145 -13.96448 -13.70088 -13.53692 -13.29600 -13.19200 -12.95417 -12.76561 -12.60589 -12.26470 -11.83632 -11.67537 -11.46892 -11.19589 -11.00198 -10.75345 -10.51072 -10.45610 -10.09617 -10.08005 -9.97255 -9.46234 -9.41589 -9.31896 -9.20027 -8.50844 -8.36426 -8.28795 -6.15081 -4.18634 0.58434 1.18870 1.57592 2.42059 2.82020 2.92665 3.00813 3.22818 3.29960 3.32549 3.69377 4.26129 4.33620 4.49581 4.52427 4.59382 4.73338 4.79282 5.02040 5.04546 5.07799 5.21113 5.22989 5.28199 5.30912 5.36131 5.40884 5.58234 5.77568 5.92836 5.96163 6.01715 6.07451 6.10760 6.14604 6.19215 6.26678 6.37778 6.74876 6.75040 7.16202 7.18110 7.40468 7.43887 7.52997 7.76390 7.81478 7.91937 8.10045 8.23175 8.87092 9.46778 10.95699 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.001915 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.541681 B =14619.799009 C =15275.510433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.727 5.727 5 C 0.565 3.435 6 O -0.542 6.542 7 C -0.167 4.167 8 C -0.035 4.035 9 C -0.160 4.160 10 C 0.191 3.809 11 N -0.677 5.677 12 C 0.526 3.474 13 O -0.512 6.512 14 C 0.076 3.924 15 H 0.101 0.899 16 N -0.830 5.830 17 C -0.138 4.138 18 C 0.024 3.976 19 C -0.526 4.526 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.133 4.133 28 C -0.062 4.062 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.402 0.598 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.416 0.584 38 H 0.357 0.643 39 H 0.346 0.654 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.262 0.738 45 H 0.142 0.858 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 0.081 -21.671 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.380 5.380 5 C 0.353 3.647 6 O -0.421 6.421 7 C -0.171 4.171 8 C -0.055 4.055 9 C -0.181 4.181 10 C 0.094 3.906 11 N -0.322 5.322 12 C 0.315 3.685 13 O -0.385 6.385 14 C -0.039 4.039 15 H 0.119 0.881 16 N -0.363 5.363 17 C -0.178 4.178 18 C -0.013 4.013 19 C -0.564 4.564 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.153 4.153 28 C -0.082 4.082 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.253 0.747 38 H 0.173 0.827 39 H 0.160 0.840 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.160 0.840 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.300 0.285 -23.160 26.225 hybrid contribution -0.861 -0.277 2.406 2.570 sum -13.161 0.008 -20.754 24.576 Atomic orbital electron populations 1.23999 0.95767 1.02516 0.97912 1.23017 0.96290 0.98133 1.02265 1.20413 0.91765 0.95642 0.89776 1.45903 1.41055 1.20107 1.30932 1.18250 0.79845 0.82069 0.84494 1.90767 1.68628 1.35390 1.47279 1.19762 1.01900 0.97105 0.98284 1.20993 0.92095 0.96861 0.95508 1.20907 1.02270 0.99495 0.95399 1.18020 0.89237 0.95179 0.88139 1.43680 1.43753 1.12579 1.32201 1.21220 0.79224 0.82465 0.85636 1.90660 1.60576 1.31876 1.55434 1.21489 0.94199 0.97168 0.91028 0.88132 1.58741 1.21852 1.04026 1.51667 1.22413 0.99001 1.01672 0.94700 1.19108 0.94650 0.97425 0.90108 1.21154 0.93630 1.50725 0.90883 0.92693 1.25010 0.95014 0.95035 0.99227 1.69942 1.09716 1.49671 1.23735 0.86574 0.80589 0.78114 0.82624 1.20595 1.21115 1.19878 1.21115 0.95214 0.99254 0.99730 1.21097 0.96972 0.96705 0.93412 0.88122 0.87778 0.86555 0.90934 0.90509 0.76233 0.84356 0.84763 0.74743 0.82672 0.84034 0.92361 0.92498 0.96313 0.96213 0.92818 0.84044 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 14.32 29.02 0.42 -0.35 16 2 C -0.18 -0.95 9.63 -36.03 -0.35 -1.29 16 3 C 0.15 1.07 6.11 -5.20 -0.03 1.04 16 4 N -0.73 -6.02 5.50 -62.51 -0.34 -6.36 16 5 C 0.56 6.42 7.76 -12.44 -0.10 6.32 16 6 O -0.54 -7.85 16.34 5.30 0.09 -7.77 16 7 C -0.17 -1.82 5.88 -104.95 -0.62 -2.44 16 8 C -0.04 -0.38 9.58 -39.23 -0.38 -0.75 16 9 C -0.16 -1.64 9.94 -39.46 -0.39 -2.03 16 10 C 0.19 2.28 6.27 -83.73 -0.53 1.76 16 11 N -0.68 -8.04 5.32 -9.86 -0.05 -8.09 16 12 C 0.53 7.79 6.80 -10.99 -0.07 7.72 16 13 O -0.51 -8.87 13.94 5.55 0.08 -8.79 16 14 C 0.08 1.17 3.21 -68.87 -0.22 0.95 16 15 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 16 N -0.83 -13.11 8.94 -5.66 -0.05 -13.16 16 17 C -0.14 -2.49 4.78 -26.73 -0.13 -2.62 16 18 C 0.02 0.56 4.74 -27.89 -0.13 0.42 16 19 C -0.53 -13.91 9.11 -34.44 -0.31 -14.23 16 20 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 23 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.13 -1.62 8.63 -39.46 -0.34 -1.96 16 28 C -0.06 -0.63 9.53 -39.22 -0.37 -1.01 16 29 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 30 H 0.10 0.37 8.06 -52.49 -0.42 -0.05 16 31 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 32 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 2.46 6.48 -40.82 -0.26 2.20 16 35 H 0.14 1.40 7.64 -52.49 -0.40 1.00 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.42 3.84 8.81 -40.82 -0.36 3.48 16 38 H 0.36 5.70 7.55 -39.29 -0.30 5.40 16 39 H 0.35 5.50 8.58 -39.29 -0.34 5.17 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.14 1.91 6.42 -52.48 -0.34 1.57 16 46 H 0.13 0.91 6.39 -52.49 -0.34 0.57 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -32.86 391.25 -8.75 -41.61 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.43 Total: 12.45 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.65 Total: -6.97 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.29 Total: -52.18 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.16 Total: -16.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.86 -8.75 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.482 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds