Wall clock time and date at job start Tue Mar 31 2020 16:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00074 * 2 1 4 4 N 1.46498 * 109.47115 * 125.00276 * 3 2 1 5 5 C 1.34785 * 119.99832 * 180.02562 * 4 3 2 6 6 O 1.21577 * 120.00132 * 0.02562 * 5 4 3 7 7 C 1.47600 * 119.99561 * 180.02562 * 5 4 3 8 8 C 1.39748 * 120.07019 * 180.02562 * 7 5 4 9 9 C 1.37669 * 119.92330 * 180.02562 * 8 7 5 10 10 C 1.39136 * 120.07465 * 0.25923 * 9 8 7 11 11 N 1.39441 * 119.92445 * 179.74140 * 10 9 8 12 12 C 1.34773 * 120.00043 * 213.43109 * 11 10 9 13 13 O 1.21283 * 119.99928 * 5.27508 * 12 11 10 14 14 C 1.50701 * 120.00227 * 185.27865 * 12 11 10 15 15 H 1.09000 * 109.47045 * 320.00012 * 14 12 11 16 16 N 1.46895 * 109.46870 * 199.99717 * 14 12 11 17 17 C 1.52999 * 109.47056 * 79.99750 * 14 12 11 18 18 C 1.52997 * 109.47253 * 184.99958 * 17 14 12 19 19 C 1.50698 * 109.47526 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99892 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00317 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99776 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00164 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47316 * 90.00247 * 23 21 19 25 25 H 1.48502 * 109.47085 * 210.00515 * 23 21 19 26 26 H 1.48502 * 109.47360 * 330.00373 * 23 21 19 27 27 C 1.39127 * 120.14584 * 359.48339 * 10 9 8 28 28 C 1.37671 * 120.07495 * 0.51082 * 27 10 9 29 29 H 1.07999 * 120.00024 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00285 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99734 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47588 * 5.00304 * 3 2 1 33 33 H 1.09003 * 109.47411 * 245.00326 * 3 2 1 34 34 H 0.96991 * 120.00117 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.03770 * 359.97438 * 8 7 5 36 36 H 1.07999 * 119.96009 * 179.97438 * 9 8 7 37 37 H 0.96998 * 119.99739 * 33.43453 * 11 10 9 38 38 H 1.00899 * 110.99716 * 176.04599 * 16 14 12 39 39 H 1.00897 * 111.00750 * 299.99700 * 16 14 12 40 40 H 1.09001 * 109.47396 * 305.00083 * 17 14 12 41 41 H 1.09005 * 109.47253 * 65.00149 * 17 14 12 42 42 H 1.09001 * 109.47022 * 300.00355 * 18 17 14 43 43 H 1.09005 * 109.46835 * 59.99935 * 18 17 14 44 44 H 0.96998 * 119.99944 * 180.02562 * 22 21 19 45 45 H 1.08005 * 119.96492 * 180.25717 * 27 10 9 46 46 H 1.08002 * 120.03589 * 179.71747 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 3.7783 2.4090 1.3334 6 8 3.7136 3.3586 0.5770 7 6 4.7160 2.4356 2.4730 8 6 5.5297 3.5519 2.6842 9 6 6.4036 3.5734 3.7477 10 6 6.4810 2.4831 4.6087 11 7 7.3711 2.5059 5.6818 12 6 7.9608 1.3658 6.0925 13 8 7.7926 0.3380 5.4709 14 6 8.8292 1.3679 7.3242 15 1 9.4304 2.2769 7.3433 16 7 9.7142 0.1957 7.3012 17 6 7.9450 1.3150 8.5717 18 6 8.8181 1.4426 9.8215 19 6 7.9472 1.3912 11.0502 20 1 6.8778 1.2782 10.9498 21 6 8.5156 1.4872 12.3027 22 7 9.8178 1.6242 12.4251 23 14 7.4360 1.4227 13.8258 24 1 7.2925 0.0135 14.2715 25 1 8.0604 2.2235 14.9093 26 1 6.0969 1.9799 13.5073 27 6 5.6684 1.3724 4.4043 28 6 4.7923 1.3445 3.3428 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 3.0451 0.5744 1.7350 35 1 5.4737 4.3965 2.0134 36 1 7.0331 4.4356 3.9113 37 1 7.5658 3.3424 6.1326 38 1 10.3512 0.2082 8.0837 39 1 9.1804 -0.6603 7.2833 40 1 7.2280 2.1355 8.5440 41 1 7.4098 0.3657 8.5978 42 1 9.5351 0.6221 9.8492 43 1 9.3532 2.3919 9.7954 44 1 10.2177 1.6914 13.3062 45 1 5.7280 0.5294 5.0768 46 1 4.1650 0.4801 3.1821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424095150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:03 Heat of formation + Delta-G solvation = -58.414505 kcal Electronic energy + Delta-G solvation = -26586.166057 eV Core-core repulsion = 22667.635332 eV Total energy + Delta-G solvation = -3918.530725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85079 -40.98109 -39.26384 -37.13672 -36.83300 -35.91564 -34.84808 -33.87518 -32.01347 -31.68729 -31.17869 -28.36805 -27.25444 -25.90134 -24.12547 -23.95792 -22.43293 -21.69168 -21.16534 -20.92115 -19.16625 -18.94575 -18.46284 -18.15956 -17.39735 -16.70241 -16.54789 -16.33545 -16.08999 -15.94277 -15.86090 -15.48462 -15.32901 -14.97764 -14.75900 -14.56148 -14.37135 -14.17427 -14.07067 -13.78530 -13.65408 -13.45454 -13.32665 -12.95579 -12.70022 -12.52569 -12.33818 -12.05703 -11.80369 -11.75596 -11.45927 -11.30112 -11.26782 -10.81070 -10.58059 -10.55498 -10.12306 -10.05394 -9.67709 -9.22976 -8.21264 -6.31067 -0.30568 0.34972 1.15536 1.35077 1.39899 1.41228 1.50993 1.82325 1.93438 2.31185 2.40070 2.83157 3.12889 3.54867 3.70101 3.73163 3.79140 3.89169 3.90874 4.09943 4.14953 4.21003 4.24989 4.39022 4.47005 4.54835 4.65473 4.71973 4.81942 4.94170 4.99173 5.07013 5.08901 5.21254 5.24418 5.31226 5.37410 5.47746 5.64033 5.66444 5.75683 5.81432 5.85354 6.03888 6.21493 6.33662 6.44716 6.46548 6.84708 7.01550 7.11403 7.38101 8.89232 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.001915 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.541681 B =14619.799009 C =15275.510433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.185 4.185 3 C 0.145 3.855 4 N -0.714 5.714 5 C 0.562 3.438 6 O -0.580 6.580 7 C -0.171 4.171 8 C -0.042 4.042 9 C -0.150 4.150 10 C 0.172 3.828 11 N -0.663 5.663 12 C 0.530 3.470 13 O -0.540 6.540 14 C 0.084 3.916 15 H 0.116 0.884 16 N -0.830 5.830 17 C -0.121 4.121 18 C 0.028 3.972 19 C -0.544 4.544 20 H 0.055 0.945 21 C 0.006 3.994 22 N -0.925 5.925 23 Si 0.956 3.044 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.266 1.266 27 C -0.149 4.149 28 C -0.054 4.054 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.413 0.587 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.429 0.571 38 H 0.355 0.645 39 H 0.345 0.655 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.263 0.737 45 H 0.127 0.873 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 0.056 -22.104 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.203 4.203 3 C 0.022 3.978 4 N -0.366 5.366 5 C 0.351 3.649 6 O -0.461 6.461 7 C -0.175 4.175 8 C -0.062 4.062 9 C -0.170 4.170 10 C 0.076 3.924 11 N -0.309 5.309 12 C 0.318 3.682 13 O -0.415 6.415 14 C -0.032 4.032 15 H 0.134 0.866 16 N -0.362 5.362 17 C -0.161 4.161 18 C -0.009 4.009 19 C -0.582 4.582 20 H 0.073 0.927 21 C -0.193 4.193 22 N -0.565 5.565 23 Si 0.782 3.218 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.190 1.190 27 C -0.169 4.169 28 C -0.073 4.073 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.251 0.749 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.268 0.732 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.145 0.855 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.745 0.257 -23.596 27.309 hybrid contribution -0.479 -0.268 2.471 2.532 sum -14.224 -0.012 -21.125 25.468 Atomic orbital electron populations 1.24184 0.95626 1.03314 0.96448 1.22952 0.96439 0.97415 1.03507 1.20470 0.91479 0.96765 0.89036 1.45870 1.40096 1.19548 1.31070 1.18365 0.80081 0.82234 0.84232 1.90747 1.69912 1.36873 1.48570 1.19877 1.01900 0.97491 0.98265 1.21173 0.92158 0.97087 0.95757 1.21092 1.01931 0.99602 0.94388 1.18199 0.89622 0.95892 0.88641 1.43463 1.43062 1.12292 1.32086 1.20966 0.79085 0.82824 0.85290 1.90653 1.61528 1.33030 1.56285 1.21401 0.93893 0.97645 0.90220 0.86630 1.58760 1.21858 1.04231 1.51385 1.22146 0.98539 1.01549 0.93885 1.18985 0.94554 0.95891 0.91460 1.21621 0.94129 1.50083 0.92356 0.92671 1.25836 0.96232 0.94857 1.02362 1.70051 1.11263 1.50801 1.24410 0.85574 0.79103 0.78181 0.78960 1.20163 1.20839 1.19021 1.21138 0.96297 0.99115 1.00352 1.21283 0.96524 0.97284 0.92250 0.88077 0.86276 0.85364 0.91603 0.91236 0.74877 0.83908 0.82270 0.73196 0.82952 0.84150 0.91364 0.93375 0.97777 0.97752 0.92788 0.85482 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 14.32 67.79 0.97 -0.21 16 2 C -0.18 -1.65 9.63 25.65 0.25 -1.40 16 3 C 0.15 2.00 6.11 85.63 0.52 2.52 16 4 N -0.71 -10.94 5.50 -469.95 -2.58 -13.52 16 5 C 0.56 12.33 7.76 86.71 0.67 13.00 16 6 O -0.58 -16.72 16.34 -3.96 -0.06 -16.78 16 7 C -0.17 -3.55 5.88 -20.08 -0.12 -3.67 16 8 C -0.04 -0.85 9.58 22.50 0.22 -0.64 16 9 C -0.15 -2.79 9.94 22.35 0.22 -2.57 16 10 C 0.17 3.87 6.27 38.36 0.24 4.11 16 11 N -0.66 -14.71 5.32 -303.49 -1.61 -16.32 16 12 C 0.53 15.15 6.80 87.66 0.60 15.75 16 13 O -0.54 -18.37 13.94 -3.04 -0.04 -18.41 16 14 C 0.08 2.49 3.21 44.17 0.14 2.63 16 15 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 16 N -0.83 -25.96 8.94 -171.81 -1.54 -27.49 16 17 C -0.12 -4.31 4.78 30.59 0.15 -4.16 16 18 C 0.03 1.31 4.74 29.85 0.14 1.45 16 19 C -0.54 -28.75 9.11 25.60 0.23 -28.52 16 20 H 0.06 2.84 7.74 -2.91 -0.02 2.82 16 21 C 0.01 0.31 5.46 84.65 0.46 0.77 16 22 N -0.93 -52.90 13.29 21.45 0.28 -52.61 16 23 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 27 C -0.15 -3.48 8.63 22.35 0.19 -3.29 16 28 C -0.05 -1.02 9.53 22.50 0.21 -0.81 16 29 H 0.10 0.74 7.84 -2.91 -0.02 0.71 16 30 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.13 0.85 8.06 -2.91 -0.02 0.82 16 32 H 0.07 1.00 7.79 -2.39 -0.02 0.98 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.41 4.28 6.48 -92.71 -0.60 3.68 16 35 H 0.14 2.75 7.64 -2.91 -0.02 2.72 16 36 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.43 7.03 8.81 -92.71 -0.82 6.21 16 38 H 0.36 11.37 7.55 -89.69 -0.68 10.69 16 39 H 0.35 10.95 8.58 -89.70 -0.77 10.18 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.00 0.19 6.87 -2.39 -0.02 0.18 16 43 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 44 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.13 3.38 6.42 -2.91 -0.02 3.36 16 46 H 0.15 1.89 6.39 -2.91 -0.02 1.87 16 Total: -1.00 -70.34 391.25 -0.25 -70.59 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.82 Total: 35.20 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.10 Total: -5.01 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -5.45 Total: -109.95 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.11 Total: -35.19 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.34 -0.25 -70.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424095150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.177 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds