Wall clock time and date at job start Tue Mar 31 2020 16:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47038 * 79.57681 * 3 2 1 5 5 C 1.36944 * 119.99796 * 269.99638 * 4 3 2 6 6 H 1.07998 * 120.00000 * 189.06341 * 5 4 3 7 7 C 1.38808 * 120.00218 * 9.06306 * 5 4 3 8 8 N 1.31626 * 119.99649 * 25.27693 * 7 5 4 9 9 Si 1.86793 * 120.00190 * 205.27674 * 7 5 4 10 10 H 1.48501 * 109.47173 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47130 * 120.00205 * 9 7 5 12 12 H 1.48502 * 109.47442 * 240.00025 * 9 7 5 13 13 C 1.46500 * 120.00139 * 90.00123 * 4 3 2 14 14 C 1.50695 * 109.47252 * 91.21145 * 13 4 3 15 15 O 1.21284 * 119.99905 * 0.02562 * 14 13 4 16 16 N 1.34779 * 120.00216 * 180.02562 * 14 13 4 17 17 C 1.47079 * 120.88327 * 180.02562 * 16 14 13 18 18 C 1.53240 * 108.51799 * 231.20361 * 17 16 14 19 19 N 1.46906 * 109.34085 * 306.16837 * 18 17 16 20 20 C 1.46900 * 110.99794 * 187.25253 * 19 18 17 21 21 C 1.50699 * 109.46740 * 169.99950 * 20 19 18 22 22 C 1.34520 * 125.79129 * 90.00209 * 21 20 19 23 23 C 1.41379 * 106.84147 * 179.75254 * 22 21 20 24 24 C 1.34517 * 106.84168 * 0.36558 * 23 22 21 25 25 O 1.34303 * 125.79020 * 269.97875 * 21 20 19 26 26 C 1.46900 * 111.26571 * 63.10505 * 19 18 17 27 27 C 1.47083 * 120.87752 * 0.02562 * 16 14 13 28 28 H 4.40639 * 5.51421 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.46914 * 319.57304 * 3 2 1 30 30 H 1.08996 * 109.46803 * 199.57773 * 3 2 1 31 31 H 0.96996 * 119.99506 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46960 * 331.21223 * 13 4 3 33 33 H 1.09000 * 109.46994 * 211.21019 * 13 4 3 34 34 H 1.08994 * 109.62820 * 111.49493 * 17 16 14 35 35 H 1.08998 * 109.62881 * 350.91026 * 17 16 14 36 36 H 1.08996 * 109.49325 * 186.20848 * 18 17 16 37 37 H 1.09001 * 109.51544 * 66.14250 * 18 17 16 38 38 H 1.08997 * 109.46739 * 50.00151 * 20 19 18 39 39 H 1.08991 * 109.47397 * 289.99939 * 20 19 18 40 40 H 1.07997 * 126.57206 * 359.97438 * 22 21 20 41 41 H 1.07997 * 126.57816 * 180.24247 * 23 22 21 42 42 H 1.07993 * 125.79109 * 179.88752 * 24 23 22 43 43 H 1.08997 * 109.49305 * 56.85401 * 26 19 18 44 44 H 1.09005 * 109.48785 * 176.93626 * 26 19 18 45 45 H 1.08994 * 109.63068 * 248.50424 * 27 16 14 46 46 H 1.08997 * 109.62728 * 9.09177 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2490 -1.3584 5 6 3.3633 -1.5321 -1.7787 6 1 3.8589 -1.7113 -2.7213 7 6 2.9583 -2.6024 -0.9931 8 7 1.9627 -2.4564 -0.1446 9 14 3.8262 -4.2500 -1.1401 10 1 4.9038 -4.1528 -2.1571 11 1 4.4163 -4.6174 0.1722 12 1 2.8487 -5.2895 -1.5516 13 6 3.3781 0.8739 -2.2671 14 6 4.8095 1.3260 -2.1345 15 8 5.5531 0.7651 -1.3577 16 7 5.2634 2.3537 -2.8791 17 6 6.6569 2.8105 -2.7657 18 6 6.6554 4.3263 -2.5410 19 7 5.8736 4.9747 -3.6024 20 6 5.9891 6.4370 -3.5228 21 6 5.3852 7.0564 -4.7567 22 6 4.1008 7.4292 -4.9017 23 6 3.9740 7.9634 -6.2046 24 6 5.1865 7.8775 -6.7808 25 8 6.0380 7.3302 -5.8980 26 6 4.4665 4.5547 -3.5600 27 6 4.3784 3.0480 -3.8267 28 1 -1.0500 0.0002 -0.0001 29 1 3.0096 -0.7815 0.6664 30 1 3.0088 0.9691 0.3443 31 1 1.6799 -3.2042 0.4046 32 1 2.7117 1.6982 -2.0130 33 1 3.1904 0.5581 -3.2934 34 1 7.1947 2.5770 -3.6845 35 1 7.1368 2.3157 -1.9213 36 1 7.6795 4.6985 -2.5646 37 1 6.2092 4.5504 -1.5720 38 1 7.0408 6.7150 -3.4542 39 1 5.4601 6.7958 -2.6400 40 1 3.3179 7.3410 -4.1632 41 1 3.0755 8.3618 -6.6522 42 1 5.4342 8.1984 -7.7817 43 1 4.0506 4.7751 -2.5769 44 1 3.9033 5.0926 -4.3227 45 1 4.6975 2.8374 -4.8474 46 1 3.3520 2.7103 -3.6838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491776829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:47 Heat of formation + Delta-G solvation = 97.184099 kcal Electronic energy + Delta-G solvation = -28288.858444 eV Core-core repulsion = 24377.074980 eV Total energy + Delta-G solvation = -3911.783464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.79674 -39.83815 -37.95255 -35.72656 -34.62361 -33.19559 -31.81208 -31.47383 -30.98140 -30.66141 -28.10967 -26.81670 -25.91009 -24.53474 -23.76306 -22.17930 -21.88431 -20.81825 -20.61933 -18.64672 -17.61540 -17.54054 -16.92993 -16.36262 -16.20166 -15.67874 -15.39713 -15.19407 -14.99780 -14.88526 -14.62530 -14.18730 -13.74983 -13.53293 -13.24614 -13.12919 -13.07058 -12.94922 -12.53332 -12.41709 -12.36305 -11.89125 -11.50281 -11.36124 -11.33581 -11.30387 -11.07975 -10.94761 -10.65493 -10.22176 -10.14224 -9.90886 -9.30600 -8.92345 -8.89862 -8.72741 -8.66855 -8.32651 -8.22723 -7.07880 -5.77151 -3.11015 1.44955 2.33890 2.73699 3.25927 3.34705 3.44035 3.51613 3.55523 3.72477 4.18105 4.38562 4.42256 4.59366 4.68205 4.73625 4.77803 4.88316 4.89085 5.04279 5.18154 5.19624 5.27047 5.32541 5.40482 5.54018 5.54977 5.57625 5.63868 5.66427 5.80720 5.83475 5.87337 5.93753 6.01434 6.08118 6.20595 6.22980 6.61632 6.69238 6.71266 6.83472 6.92473 7.33203 7.43625 7.76116 7.85635 8.23292 8.89198 9.11052 9.22534 9.77184 10.18276 11.26440 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.002601 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.490155 B =10762.684295 C =11388.782188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.090 4.090 3 C 0.270 3.730 4 N -0.565 5.565 5 C -0.256 4.256 6 H 0.075 0.925 7 C 0.005 3.995 8 N -0.887 5.887 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.293 1.293 13 C 0.136 3.864 14 C 0.482 3.518 15 O -0.519 6.519 16 N -0.629 5.629 17 C 0.116 3.884 18 C 0.045 3.955 19 N -0.535 5.535 20 C 0.132 3.868 21 C 0.002 3.998 22 C -0.208 4.208 23 C -0.214 4.214 24 C -0.041 4.041 25 O -0.169 6.169 26 C 0.035 3.965 27 C 0.118 3.882 28 H 0.190 0.810 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.254 0.746 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 22.547 -9.693 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.093 4.093 3 C 0.145 3.855 4 N -0.283 5.283 5 C -0.384 4.384 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.530 5.530 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.221 1.221 13 C 0.004 3.996 14 C 0.269 3.731 15 O -0.392 6.392 16 N -0.367 5.367 17 C -0.007 4.007 18 C -0.083 4.083 19 N -0.260 5.260 20 C 0.004 3.996 21 C -0.049 4.049 22 C -0.228 4.228 23 C -0.233 4.233 24 C -0.109 4.109 25 O -0.064 6.064 26 C -0.094 4.094 27 C -0.006 4.006 28 H 0.207 0.793 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.218 0.782 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.244 21.799 -9.599 24.624 hybrid contribution -0.479 -0.535 0.436 0.840 sum 5.765 21.264 -9.163 23.861 Atomic orbital electron populations 1.24145 0.95264 1.08709 1.04121 1.24205 0.95135 0.93357 0.96598 1.17804 0.82694 0.97879 0.87075 1.43682 1.73685 1.01516 1.09377 1.19139 1.32549 0.81369 1.05343 0.90688 1.24749 0.97155 0.97872 0.99566 1.70183 1.24003 1.30946 1.27915 0.86303 0.79587 0.83833 0.77565 1.20355 1.21480 1.22054 1.20687 0.90206 0.92140 0.96553 1.23265 0.92976 0.77895 0.78992 1.90635 1.58298 1.53800 1.36432 1.48577 1.10951 1.34752 1.42450 1.21519 0.84386 0.91955 1.02870 1.22519 0.98243 0.95396 0.92153 1.61892 1.11340 1.04961 1.47809 1.20442 1.01677 0.87467 0.89977 1.22202 0.91633 1.03058 0.87963 1.21631 0.96458 1.06102 0.98641 1.21825 0.98934 1.06843 0.95724 1.24036 0.88937 1.02345 0.95625 1.84035 1.39193 1.61825 1.21377 1.22650 0.88705 0.96792 1.01226 1.21702 0.95194 0.90157 0.93530 0.79271 0.88294 0.94676 0.93559 0.91330 0.90355 0.91504 0.88757 0.89695 0.94045 0.88880 0.91460 0.83601 0.83520 0.78235 0.94006 0.89259 0.91085 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.92 19.25 29.55 0.57 -6.35 16 2 C -0.09 -2.21 11.45 -37.12 -0.43 -2.64 16 3 C 0.27 6.68 5.46 -6.83 -0.04 6.65 16 4 N -0.57 -14.11 1.98 -177.96 -0.35 -14.46 16 5 C -0.26 -7.07 9.69 -15.06 -0.15 -7.22 16 6 H 0.08 2.07 7.95 -52.49 -0.42 1.65 16 7 C 0.00 0.14 4.88 -17.43 -0.09 0.05 16 8 N -0.89 -25.54 9.18 55.49 0.51 -25.03 16 9 Si 0.90 22.37 29.62 -169.99 -5.04 17.34 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 C 0.14 2.69 4.51 -5.20 -0.02 2.67 16 14 C 0.48 9.32 7.77 -10.99 -0.09 9.23 16 15 O -0.52 -12.27 15.88 5.55 0.09 -12.19 16 16 N -0.63 -9.32 3.01 -172.45 -0.52 -9.84 16 17 C 0.12 1.52 6.60 -3.60 -0.02 1.49 16 18 C 0.05 0.46 5.62 -3.70 -0.02 0.44 16 19 N -0.53 -5.33 4.62 -235.75 -1.09 -6.42 16 20 C 0.13 1.10 5.50 -4.98 -0.03 1.07 16 21 C 0.00 0.02 6.23 -35.62 -0.22 -0.20 16 22 C -0.21 -1.83 9.22 -39.70 -0.37 -2.19 16 23 C -0.21 -1.72 10.91 -39.70 -0.43 -2.15 16 24 C -0.04 -0.32 12.09 29.42 0.36 0.03 16 25 O -0.17 -1.71 10.65 5.70 0.06 -1.65 16 26 C 0.03 0.35 5.43 -3.69 -0.02 0.33 16 27 C 0.12 1.37 6.51 -3.59 -0.02 1.35 16 28 H 0.19 3.60 7.80 -54.09 -0.42 3.18 16 29 H 0.10 2.72 6.35 -51.93 -0.33 2.39 16 30 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.07 1.20 7.58 -51.93 -0.39 0.81 16 33 H 0.08 1.47 7.91 -51.93 -0.41 1.06 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.39 7.06 -51.93 -0.37 1.02 16 36 H 0.08 0.70 7.99 -51.93 -0.41 0.29 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.68 7.97 -51.93 -0.41 0.27 16 39 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.20 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.83 5.91 -51.93 -0.31 0.52 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.01 6.02 -51.93 -0.31 0.69 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -34.36 381.16 -8.33 -42.69 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.72 Total: 1.26 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.01 Total: 2.56 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -1.45 Total: -55.75 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.15 Total: -13.84 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.04 Total: 17.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.36 -8.33 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491776829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.873 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds