Wall clock time and date at job start Tue Mar 31 2020 16:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47038 * 79.57681 * 3 2 1 5 5 C 1.36944 * 119.99796 * 269.99638 * 4 3 2 6 6 H 1.07998 * 120.00000 * 189.06341 * 5 4 3 7 7 C 1.38808 * 120.00218 * 9.06306 * 5 4 3 8 8 N 1.31626 * 119.99649 * 25.27693 * 7 5 4 9 9 Si 1.86793 * 120.00190 * 205.27674 * 7 5 4 10 10 H 1.48501 * 109.47173 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47130 * 120.00205 * 9 7 5 12 12 H 1.48502 * 109.47442 * 240.00025 * 9 7 5 13 13 C 1.46500 * 120.00139 * 90.00123 * 4 3 2 14 14 C 1.50695 * 109.47252 * 91.21145 * 13 4 3 15 15 O 1.21284 * 119.99905 * 0.02562 * 14 13 4 16 16 N 1.34779 * 120.00216 * 180.02562 * 14 13 4 17 17 C 1.47079 * 120.88327 * 180.02562 * 16 14 13 18 18 C 1.53240 * 108.51799 * 231.20361 * 17 16 14 19 19 N 1.46906 * 109.34085 * 306.16837 * 18 17 16 20 20 C 1.46900 * 110.99794 * 187.25253 * 19 18 17 21 21 C 1.50699 * 109.46740 * 169.99950 * 20 19 18 22 22 C 1.34520 * 125.79129 * 90.00209 * 21 20 19 23 23 C 1.41379 * 106.84147 * 179.75254 * 22 21 20 24 24 C 1.34517 * 106.84168 * 0.36558 * 23 22 21 25 25 O 1.34303 * 125.79020 * 269.97875 * 21 20 19 26 26 C 1.46900 * 111.26571 * 63.10505 * 19 18 17 27 27 C 1.47083 * 120.87752 * 0.02562 * 16 14 13 28 28 H 4.40639 * 5.51421 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.46914 * 319.57304 * 3 2 1 30 30 H 1.08996 * 109.46803 * 199.57773 * 3 2 1 31 31 H 0.96996 * 119.99506 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46960 * 331.21223 * 13 4 3 33 33 H 1.09000 * 109.46994 * 211.21019 * 13 4 3 34 34 H 1.08994 * 109.62820 * 111.49493 * 17 16 14 35 35 H 1.08998 * 109.62881 * 350.91026 * 17 16 14 36 36 H 1.08996 * 109.49325 * 186.20848 * 18 17 16 37 37 H 1.09001 * 109.51544 * 66.14250 * 18 17 16 38 38 H 1.08997 * 109.46739 * 50.00151 * 20 19 18 39 39 H 1.08991 * 109.47397 * 289.99939 * 20 19 18 40 40 H 1.07997 * 126.57206 * 359.97438 * 22 21 20 41 41 H 1.07997 * 126.57816 * 180.24247 * 23 22 21 42 42 H 1.07993 * 125.79109 * 179.88752 * 24 23 22 43 43 H 1.08997 * 109.49305 * 56.85401 * 26 19 18 44 44 H 1.09005 * 109.48785 * 176.93626 * 26 19 18 45 45 H 1.08994 * 109.63068 * 248.50424 * 27 16 14 46 46 H 1.08997 * 109.62728 * 9.09177 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2490 -1.3584 5 6 3.3633 -1.5321 -1.7787 6 1 3.8589 -1.7113 -2.7213 7 6 2.9583 -2.6024 -0.9931 8 7 1.9627 -2.4564 -0.1446 9 14 3.8262 -4.2500 -1.1401 10 1 4.9038 -4.1528 -2.1571 11 1 4.4163 -4.6174 0.1722 12 1 2.8487 -5.2895 -1.5516 13 6 3.3781 0.8739 -2.2671 14 6 4.8095 1.3260 -2.1345 15 8 5.5531 0.7651 -1.3577 16 7 5.2634 2.3537 -2.8791 17 6 6.6569 2.8105 -2.7657 18 6 6.6554 4.3263 -2.5410 19 7 5.8736 4.9747 -3.6024 20 6 5.9891 6.4370 -3.5228 21 6 5.3852 7.0564 -4.7567 22 6 4.1008 7.4292 -4.9017 23 6 3.9740 7.9634 -6.2046 24 6 5.1865 7.8775 -6.7808 25 8 6.0380 7.3302 -5.8980 26 6 4.4665 4.5547 -3.5600 27 6 4.3784 3.0480 -3.8267 28 1 -1.0500 0.0002 -0.0001 29 1 3.0096 -0.7815 0.6664 30 1 3.0088 0.9691 0.3443 31 1 1.6799 -3.2042 0.4046 32 1 2.7117 1.6982 -2.0130 33 1 3.1904 0.5581 -3.2934 34 1 7.1947 2.5770 -3.6845 35 1 7.1368 2.3157 -1.9213 36 1 7.6795 4.6985 -2.5646 37 1 6.2092 4.5504 -1.5720 38 1 7.0408 6.7150 -3.4542 39 1 5.4601 6.7958 -2.6400 40 1 3.3179 7.3410 -4.1632 41 1 3.0755 8.3618 -6.6522 42 1 5.4342 8.1984 -7.7817 43 1 4.0506 4.7751 -2.5769 44 1 3.9033 5.0926 -4.3227 45 1 4.6975 2.8374 -4.8474 46 1 3.3520 2.7103 -3.6838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491776829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:46 Heat of formation + Delta-G solvation = 75.560975 kcal Electronic energy + Delta-G solvation = -28289.796093 eV Core-core repulsion = 24377.074980 eV Total energy + Delta-G solvation = -3912.721113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.41779 -41.07874 -39.15383 -37.53100 -35.79542 -33.85889 -33.48260 -33.25203 -32.26886 -31.47182 -29.40289 -28.15360 -27.77275 -25.42823 -24.82588 -23.73723 -22.58163 -21.98063 -21.26492 -19.89938 -19.44471 -18.37771 -18.12723 -18.02953 -17.15291 -17.07697 -16.51037 -16.42443 -16.25199 -15.78398 -15.73959 -15.45321 -15.18016 -14.97267 -14.81287 -14.37957 -14.13380 -13.69360 -13.60902 -13.48085 -13.33077 -13.28925 -13.14042 -12.80300 -12.66895 -12.52252 -12.31006 -12.26900 -12.25765 -12.00325 -11.91879 -11.04794 -10.78914 -10.76543 -10.58234 -10.25404 -9.77025 -9.45293 -9.20827 -9.03973 -7.86886 -5.20539 0.82517 1.42390 1.47836 1.56724 1.73582 1.84038 2.01948 2.17289 2.37447 2.53660 2.61422 2.94082 3.24852 3.73347 3.74449 3.79912 3.96069 4.02023 4.11118 4.17755 4.20306 4.25989 4.28588 4.36956 4.47284 4.49382 4.56003 4.60111 4.63037 4.76636 4.83655 4.86605 4.88936 4.99727 5.06101 5.08388 5.26944 5.32341 5.58453 5.62260 5.66344 5.68985 5.89582 5.93517 6.19199 6.30446 6.52156 7.05261 7.38425 7.40991 7.78602 8.15949 9.14717 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.002601 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.490155 B =10762.684295 C =11388.782188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.131 4.131 3 C 0.277 3.723 4 N -0.582 5.582 5 C -0.260 4.260 6 H 0.069 0.931 7 C -0.043 4.043 8 N -0.907 5.907 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.291 1.291 13 C 0.136 3.864 14 C 0.485 3.515 15 O -0.572 6.572 16 N -0.619 5.619 17 C 0.114 3.886 18 C 0.056 3.944 19 N -0.542 5.542 20 C 0.134 3.866 21 C -0.016 4.016 22 C -0.214 4.214 23 C -0.228 4.228 24 C -0.043 4.043 25 O -0.189 6.189 26 C 0.042 3.958 27 C 0.113 3.887 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.248 0.752 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.231 0.769 43 H 0.041 0.959 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 24.555 -11.203 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.134 4.134 3 C 0.152 3.848 4 N -0.301 5.301 5 C -0.389 4.389 6 H 0.087 0.913 7 C -0.239 4.239 8 N -0.552 5.552 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.218 1.218 13 C 0.005 3.995 14 C 0.272 3.728 15 O -0.450 6.450 16 N -0.355 5.355 17 C -0.009 4.009 18 C -0.072 4.072 19 N -0.267 5.267 20 C 0.008 3.992 21 C -0.066 4.066 22 C -0.234 4.234 23 C -0.247 4.247 24 C -0.111 4.111 25 O -0.085 6.085 26 C -0.086 4.086 27 C -0.010 4.010 28 H 0.242 0.758 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.173 0.827 41 H 0.181 0.819 42 H 0.247 0.753 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.096 0.904 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.869 23.882 -11.167 27.009 hybrid contribution -0.361 -1.003 0.784 1.323 sum 5.508 22.879 -10.384 25.722 Atomic orbital electron populations 1.24975 0.96195 1.06790 1.02325 1.24364 0.95679 0.95076 0.98304 1.17544 0.83296 0.97294 0.86645 1.43781 1.74272 1.01928 1.10090 1.19306 1.31581 0.82937 1.05068 0.91325 1.25342 0.97964 1.00485 1.00086 1.70311 1.24967 1.31169 1.28720 0.85453 0.78545 0.80894 0.76980 1.20224 1.22095 1.21786 1.20874 0.90958 0.91511 0.96131 1.22864 0.92384 0.78544 0.78979 1.90618 1.59331 1.56012 1.38996 1.48481 1.12199 1.33346 1.41497 1.21631 0.82987 0.93971 1.02360 1.22400 0.99741 0.93097 0.92005 1.61862 1.11078 1.06226 1.47578 1.20477 1.02548 0.86081 0.90130 1.22384 0.91986 1.04033 0.88246 1.21880 0.96540 1.05741 0.99234 1.22145 0.99830 1.07096 0.95667 1.24722 0.88672 1.01259 0.96397 1.84025 1.40132 1.62368 1.21954 1.22563 0.89151 0.95322 1.01568 1.21951 0.94971 0.91136 0.92935 0.75785 0.91925 0.93049 0.94254 0.88815 0.89307 0.90825 0.90808 0.87358 0.94490 0.87886 0.90309 0.82698 0.81876 0.75261 0.94042 0.88137 0.90359 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.51 19.25 74.32 1.43 -11.08 16 2 C -0.13 -6.43 11.45 31.13 0.36 -6.07 16 3 C 0.28 13.96 5.46 84.57 0.46 14.42 16 4 N -0.58 -29.35 1.98 -716.94 -1.42 -30.77 16 5 C -0.26 -14.57 9.69 84.03 0.81 -13.75 16 6 H 0.07 3.84 7.95 -2.91 -0.02 3.81 16 7 C -0.04 -2.44 4.88 84.86 0.41 -2.02 16 8 N -0.91 -53.08 9.18 21.65 0.20 -52.89 16 9 Si 0.95 46.93 29.62 68.60 2.03 48.96 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 13 C 0.14 5.28 4.51 85.63 0.39 5.67 16 14 C 0.49 18.73 7.77 87.66 0.68 19.41 16 15 O -0.57 -27.74 15.88 -3.04 -0.05 -27.79 16 16 N -0.62 -17.77 3.01 -817.91 -2.46 -20.23 16 17 C 0.11 2.87 6.60 86.35 0.57 3.44 16 18 C 0.06 1.03 5.62 86.38 0.49 1.51 16 19 N -0.54 -9.55 4.62 -899.77 -4.16 -13.71 16 20 C 0.13 1.92 5.50 85.56 0.47 2.39 16 21 C -0.02 -0.27 6.23 24.83 0.15 -0.12 16 22 C -0.21 -3.30 9.22 22.19 0.20 -3.09 16 23 C -0.23 -3.16 10.91 22.19 0.24 -2.91 16 24 C -0.04 -0.57 12.09 66.97 0.81 0.23 16 25 O -0.19 -3.46 10.65 -2.52 -0.03 -3.49 16 26 C 0.04 0.75 5.43 86.39 0.47 1.22 16 27 C 0.11 2.40 6.51 86.36 0.56 2.96 16 28 H 0.23 7.84 7.80 -4.42 -0.03 7.81 16 29 H 0.06 3.58 6.35 -2.39 -0.02 3.57 16 30 H 0.05 2.33 8.07 -2.39 -0.02 2.32 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.09 3.14 7.58 -2.39 -0.02 3.12 16 33 H 0.09 3.24 7.91 -2.39 -0.02 3.22 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.20 7.06 -2.39 -0.02 2.18 16 36 H 0.11 1.52 7.99 -2.39 -0.02 1.50 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 1.26 7.97 -2.39 -0.02 1.24 16 39 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 40 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 42 H 0.23 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 44 H 0.10 1.61 5.91 -2.38 -0.01 1.59 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.10 1.96 6.02 -2.39 -0.01 1.95 16 Total: -1.00 -75.06 381.16 3.60 -71.46 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.97 Total: 16.24 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 8.51 Total: 12.21 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -7.84 Total: -117.59 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.08 Total: -31.28 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.06 3.60 -71.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491776829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.021 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds