Wall clock time and date at job start Tue Mar 31 2020 16:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 N 1.46492 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99990 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99968 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47117 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47360 * 120.00019 * 9 7 5 12 12 H 1.48499 * 109.47434 * 240.00739 * 9 7 5 13 13 N 1.46498 * 109.47574 * 120.00137 * 2 1 3 14 14 C 1.34770 * 119.99713 * 304.32596 * 13 2 1 15 15 O 1.21557 * 120.00353 * 354.95748 * 14 13 2 16 16 C 1.47864 * 120.00164 * 174.96154 * 14 13 2 17 17 C 1.39702 * 120.07054 * 359.96793 * 16 14 13 18 18 C 1.38063 * 120.14503 * 180.02562 * 17 16 14 19 19 C 1.38103 * 120.29590 * 359.76702 * 18 17 16 20 20 C 1.39661 * 120.14040 * 0.51565 * 19 18 17 21 21 C 1.47867 * 120.07208 * 179.74070 * 20 19 18 22 22 N 1.34774 * 119.99686 * 359.72037 * 21 20 19 23 23 O 1.21547 * 119.99991 * 179.72575 * 21 20 19 24 24 C 1.39293 * 120.07805 * 180.02562 * 16 14 13 25 25 C 1.53002 * 109.46972 * 240.00038 * 2 1 3 26 26 C 1.52999 * 117.49724 * 12.86575 * 25 2 1 27 27 C 1.53001 * 117.49745 * 304.20809 * 25 2 1 28 28 H 1.09006 * 109.46834 * 299.99927 * 1 2 3 29 29 H 1.08991 * 109.47418 * 59.99674 * 1 2 3 30 30 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46933 * 300.00490 * 3 2 1 32 32 H 1.09000 * 109.46856 * 59.99906 * 3 2 1 33 33 H 0.97000 * 120.00394 * 359.97438 * 4 3 2 34 34 H 0.97002 * 120.00446 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00143 * 124.31593 * 13 2 1 36 36 H 1.08003 * 119.93000 * 0.03261 * 17 16 14 37 37 H 1.07996 * 119.85058 * 180.02562 * 18 17 16 38 38 H 1.07993 * 119.92950 * 180.27823 * 19 18 17 39 39 H 0.97005 * 120.00197 * 0.02562 * 22 21 20 40 40 H 0.97000 * 119.99819 * 179.72707 * 22 21 20 41 41 H 1.08003 * 120.14237 * 359.97438 * 24 16 14 42 42 H 1.09001 * 115.55341 * 158.53324 * 25 2 1 43 43 H 1.09003 * 117.50152 * 0.02562 * 26 25 2 44 44 H 1.09006 * 117.50146 * 145.02041 * 26 25 2 45 45 H 1.09008 * 117.49737 * 214.97839 * 27 25 2 46 46 H 1.08996 * 117.50389 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1897 2.6284 -0.0013 6 1 3.6497 3.5636 -0.0009 7 6 5.5778 2.6283 -0.0013 8 7 6.2359 1.4885 -0.0012 9 14 6.5119 4.2460 -0.0029 10 1 5.5468 5.3748 -0.0033 11 1 7.3657 4.3259 1.2095 12 1 7.3655 4.3236 -1.2156 13 7 2.0185 -0.6906 1.1961 14 6 1.6226 -0.2832 2.4182 15 8 0.9346 0.7122 2.5339 16 6 2.0252 -1.0470 3.6186 17 6 2.8154 -2.1916 3.4875 18 6 3.1918 -2.9063 4.6072 19 6 2.7946 -2.4929 5.8636 20 6 1.9996 -1.3538 6.0083 21 6 1.5704 -0.9158 7.3538 22 7 1.9416 -1.6193 8.4417 23 8 0.8826 0.0786 7.4786 24 6 1.6165 -0.6277 4.8825 25 6 2.0400 -0.7213 -1.2493 26 6 1.0280 -1.0130 -2.3591 27 6 1.5561 -2.1534 -1.4851 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6024 -0.0006 34 1 7.2059 1.4884 -0.0009 35 1 2.6266 -1.4412 1.1084 36 1 3.1327 -2.5181 2.5081 37 1 3.8031 -3.7902 4.5004 38 1 3.0961 -3.0538 6.7358 39 1 2.4908 -2.4127 8.3421 40 1 1.6634 -1.3297 9.3247 41 1 1.0051 0.2562 4.9892 42 1 3.0595 -0.4787 -1.5489 43 1 -0.0010 -0.6908 -2.1994 44 1 1.3819 -0.9629 -3.3889 45 1 2.2572 -2.8531 -1.9403 46 1 0.8748 -2.5820 -0.7502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267856535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:49 Heat of formation + Delta-G solvation = -2.056266 kcal Electronic energy + Delta-G solvation = -28605.545264 eV Core-core repulsion = 24689.458415 eV Total energy + Delta-G solvation = -3916.086849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59803 -39.84499 -38.41792 -37.33874 -34.65866 -34.11083 -33.53196 -31.87851 -31.19247 -30.62352 -29.42039 -25.89041 -24.49735 -24.21314 -23.04075 -22.31579 -22.04991 -21.30806 -19.96581 -18.85769 -18.57276 -17.30633 -17.13099 -16.68369 -16.21273 -15.79371 -15.27292 -15.00685 -14.81528 -14.61170 -14.48685 -14.28172 -13.96335 -13.90834 -13.49816 -13.24099 -12.73761 -12.58000 -12.29073 -12.19844 -12.01275 -11.90080 -11.49218 -11.36388 -11.05443 -10.82164 -10.79237 -10.72034 -10.29876 -10.19151 -10.03170 -9.98319 -9.82199 -9.64016 -9.39648 -9.21145 -9.15948 -8.76205 -8.57791 -6.80753 -5.71096 -2.96633 0.50824 0.97362 2.50434 3.13619 3.20985 3.37500 3.47632 3.53965 3.56157 3.89303 4.08686 4.47435 4.53448 4.64943 4.65722 4.78686 4.94827 4.99694 5.09456 5.18419 5.23333 5.35510 5.42393 5.49186 5.65252 5.69957 5.72262 5.79182 5.97491 6.02581 6.05998 6.08367 6.15269 6.23257 6.26484 6.29948 6.46610 6.47482 6.55670 6.61818 6.70811 6.94138 7.03980 7.13961 7.78870 7.88134 8.00535 8.48802 8.56500 9.60461 10.18351 10.54262 11.52344 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.003939 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.917207 B = 7106.172661 C = 8864.912935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.203 3.797 3 C 0.143 3.857 4 N -0.726 5.726 5 C -0.228 4.228 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.703 5.703 14 C 0.563 3.437 15 O -0.525 6.525 16 C -0.129 4.129 17 C -0.056 4.056 18 C -0.133 4.133 19 C -0.068 4.068 20 C -0.152 4.152 21 C 0.565 3.435 22 N -0.853 5.853 23 O -0.534 6.534 24 C -0.001 4.001 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.046 0.954 33 H 0.381 0.619 34 H 0.252 0.748 35 H 0.397 0.603 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.400 0.600 40 H 0.405 0.595 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 -16.763 8.540 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.117 3.883 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.353 5.353 14 C 0.349 3.651 15 O -0.402 6.402 16 C -0.132 4.132 17 C -0.075 4.075 18 C -0.151 4.151 19 C -0.087 4.087 20 C -0.155 4.155 21 C 0.351 3.649 22 N -0.417 5.417 23 O -0.410 6.410 24 C -0.020 4.020 25 C -0.169 4.169 26 C -0.209 4.209 27 C -0.221 4.221 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.215 0.785 34 H 0.062 0.938 35 H 0.232 0.768 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.229 0.771 40 H 0.236 0.764 41 H 0.168 0.832 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.780 -15.186 8.490 19.958 hybrid contribution 1.558 -0.124 0.259 1.584 sum -8.222 -15.310 8.749 19.456 Atomic orbital electron populations 1.22292 0.94593 1.01678 1.03764 1.20050 0.93154 0.93171 0.81890 1.21077 0.86444 0.91644 0.99301 1.42231 0.99199 1.06159 1.89405 1.19300 0.89032 0.86267 1.41318 0.91275 1.24658 0.96275 0.96680 1.03532 1.69649 1.06503 1.23734 1.58810 0.86144 0.79922 0.83336 0.77037 1.20595 1.22036 1.22020 1.45808 1.49018 1.35430 1.05063 1.17960 0.80216 0.84063 0.82823 1.90732 1.38660 1.24758 1.86095 1.20084 1.01672 0.97188 0.94235 1.21607 0.93409 0.92845 0.99632 1.21032 1.01293 1.00935 0.91863 1.21400 0.94809 0.94511 0.98005 1.19783 1.03803 0.98561 0.93339 1.18238 0.79173 0.82689 0.84758 1.43729 1.57055 1.31711 1.09239 1.90852 1.37802 1.25618 1.86757 1.21398 0.93706 0.97420 0.89517 1.22572 1.00801 0.96972 0.96544 1.23057 0.99321 1.02659 0.95854 1.22956 1.04026 0.91526 1.03552 0.90076 0.91455 0.92929 0.95794 0.93644 0.78497 0.93829 0.76831 0.84869 0.84657 0.85402 0.77052 0.76422 0.83236 0.85936 0.88232 0.88871 0.88940 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 6.98 37.16 0.26 -2.16 16 2 C 0.20 3.34 0.54 -131.82 -0.07 3.27 16 3 C 0.14 3.10 5.03 -4.05 -0.02 3.08 16 4 N -0.73 -18.46 5.04 -59.91 -0.30 -18.76 16 5 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 6 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 8 N -0.94 -28.18 13.06 55.49 0.72 -27.45 16 9 Si 0.90 23.09 29.55 -169.99 -5.02 18.06 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 N -0.70 -11.01 4.67 -48.53 -0.23 -11.24 16 14 C 0.56 9.77 7.18 -12.32 -0.09 9.68 16 15 O -0.53 -10.83 12.57 5.32 0.07 -10.77 16 16 C -0.13 -1.88 5.87 -105.02 -0.62 -2.49 16 17 C -0.06 -0.63 9.53 -39.10 -0.37 -1.00 16 18 C -0.13 -1.18 10.02 -39.69 -0.40 -1.58 16 19 C -0.07 -0.59 9.54 -39.10 -0.37 -0.96 16 20 C -0.15 -1.82 5.87 -105.02 -0.62 -2.44 16 21 C 0.57 6.91 8.05 -12.32 -0.10 6.81 16 22 N -0.85 -6.00 8.82 30.53 0.27 -5.73 16 23 O -0.53 -8.92 17.18 5.32 0.09 -8.83 16 24 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 25 C -0.15 -2.23 4.84 -90.62 -0.44 -2.67 16 26 C -0.17 -2.11 9.64 -26.69 -0.26 -2.36 16 27 C -0.18 -2.11 9.82 -26.69 -0.26 -2.37 16 28 H 0.08 1.36 6.03 -51.93 -0.31 1.05 16 29 H 0.07 0.91 6.77 -51.93 -0.35 0.56 16 30 H 0.05 0.67 6.99 -51.93 -0.36 0.31 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.10 6.32 -51.93 -0.33 0.77 16 33 H 0.38 9.84 6.62 -40.82 -0.27 9.57 16 34 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.40 5.36 6.52 -40.82 -0.27 5.09 16 36 H 0.13 1.25 6.40 -52.48 -0.34 0.91 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.59 6.39 -52.49 -0.34 0.25 16 39 H 0.40 1.52 6.85 -40.82 -0.28 1.24 16 40 H 0.40 2.32 8.93 -40.82 -0.36 1.95 16 41 H 0.15 2.54 7.23 -52.48 -0.38 2.16 16 42 H 0.12 2.19 7.08 -51.93 -0.37 1.83 16 43 H 0.10 1.14 5.88 -51.93 -0.31 0.84 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 46 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -36.75 373.73 -8.60 -45.35 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -5.88 Total: 16.58 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.96 Total: -2.85 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.47 Total: -63.18 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.16 Total: -19.60 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.75 -8.60 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.294 kcal (2) G-P(sol) polarization free energy of solvation -36.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds