Wall clock time and date at job start Tue Mar 31 2020 16:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 N 1.46492 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99990 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99968 * 179.97438 * 5 4 3 8 8 N 1.31615 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47117 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47360 * 120.00019 * 9 7 5 12 12 H 1.48499 * 109.47434 * 240.00739 * 9 7 5 13 13 N 1.46498 * 109.47574 * 120.00137 * 2 1 3 14 14 C 1.34770 * 119.99713 * 304.32596 * 13 2 1 15 15 O 1.21557 * 120.00353 * 354.95748 * 14 13 2 16 16 C 1.47864 * 120.00164 * 174.96154 * 14 13 2 17 17 C 1.39702 * 120.07054 * 359.96793 * 16 14 13 18 18 C 1.38063 * 120.14503 * 180.02562 * 17 16 14 19 19 C 1.38103 * 120.29590 * 359.76702 * 18 17 16 20 20 C 1.39661 * 120.14040 * 0.51565 * 19 18 17 21 21 C 1.47867 * 120.07208 * 179.74070 * 20 19 18 22 22 N 1.34774 * 119.99686 * 359.72037 * 21 20 19 23 23 O 1.21547 * 119.99991 * 179.72575 * 21 20 19 24 24 C 1.39293 * 120.07805 * 180.02562 * 16 14 13 25 25 C 1.53002 * 109.46972 * 240.00038 * 2 1 3 26 26 C 1.52999 * 117.49724 * 12.86575 * 25 2 1 27 27 C 1.53001 * 117.49745 * 304.20809 * 25 2 1 28 28 H 1.09006 * 109.46834 * 299.99927 * 1 2 3 29 29 H 1.08991 * 109.47418 * 59.99674 * 1 2 3 30 30 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46933 * 300.00490 * 3 2 1 32 32 H 1.09000 * 109.46856 * 59.99906 * 3 2 1 33 33 H 0.97000 * 120.00394 * 359.97438 * 4 3 2 34 34 H 0.97002 * 120.00446 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00143 * 124.31593 * 13 2 1 36 36 H 1.08003 * 119.93000 * 0.03261 * 17 16 14 37 37 H 1.07996 * 119.85058 * 180.02562 * 18 17 16 38 38 H 1.07993 * 119.92950 * 180.27823 * 19 18 17 39 39 H 0.97005 * 120.00197 * 0.02562 * 22 21 20 40 40 H 0.97000 * 119.99819 * 179.72707 * 22 21 20 41 41 H 1.08003 * 120.14237 * 359.97438 * 24 16 14 42 42 H 1.09001 * 115.55341 * 158.53324 * 25 2 1 43 43 H 1.09003 * 117.50152 * 0.02562 * 26 25 2 44 44 H 1.09006 * 117.50146 * 145.02041 * 26 25 2 45 45 H 1.09008 * 117.49737 * 214.97839 * 27 25 2 46 46 H 1.08996 * 117.50389 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1897 2.6284 -0.0013 6 1 3.6497 3.5636 -0.0009 7 6 5.5778 2.6283 -0.0013 8 7 6.2359 1.4885 -0.0012 9 14 6.5119 4.2460 -0.0029 10 1 5.5468 5.3748 -0.0033 11 1 7.3657 4.3259 1.2095 12 1 7.3655 4.3236 -1.2156 13 7 2.0185 -0.6906 1.1961 14 6 1.6226 -0.2832 2.4182 15 8 0.9346 0.7122 2.5339 16 6 2.0252 -1.0470 3.6186 17 6 2.8154 -2.1916 3.4875 18 6 3.1918 -2.9063 4.6072 19 6 2.7946 -2.4929 5.8636 20 6 1.9996 -1.3538 6.0083 21 6 1.5704 -0.9158 7.3538 22 7 1.9416 -1.6193 8.4417 23 8 0.8826 0.0786 7.4786 24 6 1.6165 -0.6277 4.8825 25 6 2.0400 -0.7213 -1.2493 26 6 1.0280 -1.0130 -2.3591 27 6 1.5561 -2.1534 -1.4851 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9900 0.6024 -0.0006 34 1 7.2059 1.4884 -0.0009 35 1 2.6266 -1.4412 1.1084 36 1 3.1327 -2.5181 2.5081 37 1 3.8031 -3.7902 4.5004 38 1 3.0961 -3.0538 6.7358 39 1 2.4908 -2.4127 8.3421 40 1 1.6634 -1.3297 9.3247 41 1 1.0051 0.2562 4.9892 42 1 3.0595 -0.4787 -1.5489 43 1 -0.0010 -0.6908 -2.1994 44 1 1.3819 -0.9629 -3.3889 45 1 2.2572 -2.8531 -1.9403 46 1 0.8748 -2.5820 -0.7502 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267856535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:48 Heat of formation + Delta-G solvation = -30.710139 kcal Electronic energy + Delta-G solvation = -28606.787789 eV Core-core repulsion = 24689.458415 eV Total energy + Delta-G solvation = -3917.329374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74683 -40.93423 -39.48495 -38.49259 -36.38190 -35.13930 -34.94992 -33.34722 -32.18954 -32.09028 -30.76737 -27.61910 -25.71108 -25.29109 -24.47275 -23.87388 -23.10709 -22.24673 -21.02379 -20.22557 -19.53892 -19.25161 -18.22057 -17.67738 -17.11245 -17.02116 -16.76559 -16.30008 -16.13846 -15.90874 -15.70419 -15.46043 -15.31243 -15.01266 -14.81577 -14.78821 -14.24699 -13.86974 -13.68621 -13.49985 -13.21730 -13.10532 -12.92287 -12.83047 -12.49951 -12.43258 -12.20951 -12.04549 -12.00118 -11.77385 -11.31412 -11.24969 -11.08335 -10.93690 -10.80251 -10.63507 -10.18421 -10.08291 -9.90191 -8.95453 -7.96773 -5.22347 -0.38442 -0.00672 1.42577 1.43754 1.53608 1.55617 2.01623 2.11776 2.46927 2.53870 2.86934 3.03870 3.35787 3.56906 3.67300 3.74853 3.82665 3.90458 3.94380 4.05300 4.11461 4.17888 4.25427 4.35827 4.45719 4.55645 4.65766 4.79832 4.85551 4.87221 4.89014 4.97623 5.04068 5.11758 5.14329 5.20702 5.25878 5.31115 5.34909 5.44531 5.47690 5.64049 5.72383 5.83489 6.26558 6.37107 6.62677 7.23962 7.28051 7.33987 8.07594 8.37630 9.26374 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.003939 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.917207 B = 7106.172661 C = 8864.912935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.211 3.789 3 C 0.145 3.855 4 N -0.727 5.727 5 C -0.246 4.246 6 H 0.060 0.940 7 C -0.066 4.066 8 N -0.960 5.960 9 Si 0.966 3.034 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.286 1.286 13 N -0.693 5.693 14 C 0.553 3.447 15 O -0.573 6.573 16 C -0.155 4.155 17 C -0.055 4.055 18 C -0.120 4.120 19 C -0.045 4.045 20 C -0.162 4.162 21 C 0.561 3.439 22 N -0.822 5.822 23 O -0.593 6.593 24 C -0.030 4.030 25 C -0.176 4.176 26 C -0.164 4.164 27 C -0.152 4.152 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.019 0.981 32 H 0.013 0.987 33 H 0.378 0.622 34 H 0.252 0.748 35 H 0.408 0.592 36 H 0.152 0.848 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.420 0.580 40 H 0.414 0.586 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 -20.513 8.935 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.125 3.875 3 C 0.017 3.983 4 N -0.370 5.370 5 C -0.378 4.378 6 H 0.078 0.922 7 C -0.258 4.258 8 N -0.611 5.611 9 Si 0.795 3.205 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.213 1.213 13 N -0.344 5.344 14 C 0.342 3.658 15 O -0.453 6.453 16 C -0.158 4.158 17 C -0.074 4.074 18 C -0.138 4.138 19 C -0.063 4.063 20 C -0.165 4.165 21 C 0.347 3.653 22 N -0.387 5.387 23 O -0.475 6.475 24 C -0.050 4.050 25 C -0.195 4.195 26 C -0.202 4.202 27 C -0.189 4.189 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.212 0.788 34 H 0.061 0.939 35 H 0.245 0.755 36 H 0.170 0.830 37 H 0.200 0.800 38 H 0.198 0.802 39 H 0.253 0.747 40 H 0.247 0.753 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.580 -19.009 8.899 22.675 hybrid contribution 1.213 0.992 0.195 1.579 sum -7.367 -18.017 9.095 21.485 Atomic orbital electron populations 1.22208 0.92995 1.03147 1.03028 1.19853 0.94157 0.90235 0.83218 1.21093 0.84443 0.95481 0.97259 1.42257 1.00614 1.05081 1.89093 1.19568 0.89770 0.87141 1.41296 0.92194 1.25372 0.96910 0.99874 1.03680 1.69767 1.06558 1.25305 1.59472 0.85188 0.78495 0.79851 0.76934 1.20110 1.21999 1.21271 1.45752 1.48847 1.35339 1.04473 1.18568 0.79466 0.83743 0.84053 1.90703 1.40846 1.26946 1.86838 1.19919 1.04264 0.99023 0.92588 1.21902 0.92178 0.91482 1.01814 1.21583 1.00147 1.01363 0.90659 1.21952 0.91797 0.92461 1.00115 1.19859 1.04770 0.99715 0.92181 1.18407 0.78684 0.82297 0.85898 1.43465 1.55642 1.31270 1.08328 1.90827 1.40725 1.28398 1.87536 1.21204 0.95067 0.97427 0.91321 1.22230 0.99889 1.00451 0.96914 1.23191 0.98987 1.02446 0.95533 1.23056 1.03317 0.89802 1.02692 0.92732 0.90282 0.90212 0.96306 0.96949 0.78816 0.93919 0.75488 0.83016 0.80034 0.80226 0.74665 0.75304 0.87411 0.89284 0.87149 0.88177 0.87355 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 6.98 71.98 0.50 -4.12 16 2 C 0.21 7.16 0.54 3.60 0.00 7.16 16 3 C 0.14 6.65 5.03 86.38 0.43 7.08 16 4 N -0.73 -38.70 5.04 -343.47 -1.73 -40.43 16 5 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 6 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 8 N -0.96 -58.40 13.06 21.65 0.28 -58.12 16 9 Si 0.97 48.16 29.55 68.60 2.03 50.18 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 13 N -0.69 -22.33 4.67 -425.74 -1.99 -24.32 16 14 C 0.55 20.52 7.18 86.79 0.62 21.14 16 15 O -0.57 -26.11 12.57 -3.89 -0.05 -26.16 16 16 C -0.15 -4.70 5.87 -20.12 -0.12 -4.82 16 17 C -0.05 -1.12 9.53 22.58 0.22 -0.91 16 18 C -0.12 -1.57 10.02 22.20 0.22 -1.35 16 19 C -0.04 -0.59 9.54 22.58 0.22 -0.38 16 20 C -0.16 -3.81 5.87 -20.12 -0.12 -3.93 16 21 C 0.56 13.64 8.05 86.79 0.70 14.34 16 22 N -0.82 -9.54 8.82 -175.59 -1.55 -11.09 16 23 O -0.59 -21.19 17.18 -3.86 -0.07 -21.26 16 24 C -0.03 -0.97 9.14 22.79 0.21 -0.76 16 25 C -0.18 -5.15 4.84 -10.79 -0.05 -5.20 16 26 C -0.16 -3.69 9.64 30.62 0.30 -3.40 16 27 C -0.15 -3.04 9.82 30.62 0.30 -2.74 16 28 H 0.05 1.94 6.03 -2.38 -0.01 1.93 16 29 H 0.08 2.12 6.77 -2.39 -0.02 2.10 16 30 H 0.08 1.91 6.99 -2.39 -0.02 1.90 16 31 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.01 0.66 6.32 -2.39 -0.02 0.65 16 33 H 0.38 20.30 6.62 -92.71 -0.61 19.68 16 34 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.41 10.87 6.52 -92.71 -0.60 10.26 16 36 H 0.15 2.43 6.40 -2.91 -0.02 2.41 16 37 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 38 H 0.18 0.45 6.39 -2.91 -0.02 0.43 16 39 H 0.42 1.33 6.85 -92.70 -0.64 0.70 16 40 H 0.41 3.86 8.93 -92.71 -0.83 3.04 16 41 H 0.11 4.27 7.23 -2.91 -0.02 4.25 16 42 H 0.09 3.26 7.08 -2.39 -0.02 3.24 16 43 H 0.11 2.25 5.88 -2.39 -0.01 2.24 16 44 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.11 1.86 7.34 -2.39 -0.02 1.85 16 Total: -1.00 -88.20 373.73 0.06 -88.15 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -1.60 Total: 38.15 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 4.74 Total: 4.89 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -4.99 Total: -133.96 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.12 Total: -47.41 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.18 kcal Total: -88.20 0.06 -88.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.438 kcal (2) G-P(sol) polarization free energy of solvation -88.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds