Wall clock time and date at job start Tue Mar 31 2020 16:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 N 1.46504 * 109.47227 * 300.00323 * 3 2 1 5 5 C 1.36936 * 119.99987 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00320 * 359.97438 * 5 4 3 7 7 C 1.38820 * 119.99785 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99876 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99913 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47425 * 59.99525 * 9 7 5 11 11 H 1.48498 * 109.46829 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46802 * 299.99641 * 9 7 5 13 13 N 1.46501 * 109.46974 * 240.00143 * 2 1 3 14 14 C 1.34781 * 119.99628 * 174.49050 * 13 2 1 15 15 O 1.21549 * 120.00385 * 5.21696 * 14 13 2 16 16 C 1.47864 * 119.99715 * 185.20938 * 14 13 2 17 17 C 1.39701 * 120.07192 * 359.72654 * 16 14 13 18 18 C 1.38058 * 120.14402 * 179.78679 * 17 16 14 19 19 C 1.38105 * 120.29789 * 0.46772 * 18 17 16 20 20 C 1.39665 * 120.14016 * 359.78939 * 19 18 17 21 21 C 1.47861 * 120.07312 * 179.97438 * 20 19 18 22 22 N 1.34769 * 120.00087 * 0.02562 * 21 20 19 23 23 O 1.21558 * 119.99760 * 180.02562 * 21 20 19 24 24 C 1.39294 * 120.07331 * 180.02562 * 16 14 13 25 25 C 1.52997 * 109.47116 * 120.00002 * 2 1 3 26 26 C 1.52997 * 117.49744 * 122.28195 * 25 2 1 27 27 C 1.52995 * 59.99955 * 252.51051 * 26 25 2 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47134 * 59.99808 * 1 2 3 30 30 H 1.09001 * 109.47086 * 300.00219 * 1 2 3 31 31 H 1.09001 * 109.47249 * 59.99880 * 3 2 1 32 32 H 1.08997 * 109.47642 * 179.97438 * 3 2 1 33 33 H 0.97001 * 119.99910 * 359.97438 * 4 3 2 34 34 H 0.97000 * 119.99960 * 180.02562 * 8 7 5 35 35 H 0.96992 * 120.00346 * 354.49173 * 13 2 1 36 36 H 1.07998 * 119.93064 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.85586 * 180.21564 * 18 17 16 38 38 H 1.07989 * 119.93288 * 179.76406 * 19 18 17 39 39 H 0.97003 * 120.00215 * 0.02562 * 22 21 20 40 40 H 0.97004 * 120.00354 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.14556 * 359.96079 * 24 16 14 42 42 H 1.09000 * 115.54984 * 267.98373 * 25 2 1 43 43 H 1.09005 * 117.50094 * 359.97438 * 26 25 2 44 44 H 1.09005 * 117.50289 * 145.01718 * 26 25 2 45 45 H 1.09002 * 117.49951 * 252.51053 * 27 26 25 46 46 H 1.08993 * 117.50332 * 107.49008 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4131 6 1 2.5039 3.9689 -0.7022 7 6 1.4197 4.0986 -2.5462 8 7 0.6625 3.4591 -3.4123 9 14 1.8710 5.8870 -2.8419 10 1 3.3476 6.0167 -2.9310 11 1 1.2553 6.3494 -4.1116 12 1 1.3681 6.7167 -1.7175 13 7 2.0183 -0.6906 -1.1962 14 6 3.3383 -0.7175 -1.4670 15 8 4.1315 -0.2522 -0.6722 16 6 3.8216 -1.3134 -2.7311 17 6 2.9118 -1.8539 -3.6430 18 6 3.3610 -2.4066 -4.8257 19 6 4.7119 -2.4379 -5.1112 20 6 5.6326 -1.9058 -4.2058 21 6 7.0785 -1.9407 -4.5128 22 7 7.5093 -2.4858 -5.6676 23 8 7.8787 -1.4776 -3.7235 24 6 5.1855 -1.3425 -3.0124 25 6 2.0400 -0.7212 1.2492 26 6 2.9588 -1.9271 1.0431 27 6 1.5173 -2.1350 1.5115 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9942 1.6617 -1.8348 34 1 0.3391 3.9163 -4.2043 35 1 1.3917 -1.1284 -1.7933 36 1 1.8543 -1.8359 -3.4242 37 1 2.6533 -2.8200 -5.5289 38 1 5.0571 -2.8751 -6.0364 39 1 6.8708 -2.8550 -6.2975 40 1 8.4580 -2.5090 -5.8688 41 1 5.8934 -0.9298 -2.3088 42 1 2.2293 -0.0859 2.1145 43 1 3.1996 -2.2069 0.0174 44 1 3.7530 -2.0853 1.7727 45 1 1.3629 -2.4300 2.5495 46 1 0.8100 -2.5512 0.7943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267856537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:52 Heat of formation + Delta-G solvation = 5.486318 kcal Electronic energy + Delta-G solvation = -28996.732254 eV Core-core repulsion = 25080.972477 eV Total energy + Delta-G solvation = -3915.759778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69874 -39.90262 -38.26686 -36.84765 -34.94883 -34.06851 -33.41958 -31.89299 -31.14392 -30.60971 -29.39709 -26.02042 -24.42328 -24.02842 -23.46251 -22.04762 -21.39426 -21.25826 -20.26760 -18.95827 -18.60918 -17.29373 -17.13676 -16.54742 -16.17449 -15.91664 -15.42227 -14.91847 -14.77520 -14.57450 -14.35893 -14.08789 -13.86260 -13.75025 -13.45935 -13.26571 -12.85547 -12.53426 -12.17960 -12.09470 -12.01425 -11.83180 -11.44204 -11.26171 -11.03498 -10.82365 -10.76170 -10.69521 -10.26031 -10.18912 -10.05442 -9.94218 -9.84123 -9.62601 -9.29387 -9.15916 -9.09945 -8.73234 -8.56402 -6.79723 -5.70222 -2.95697 0.55817 1.02695 2.55175 3.18391 3.25710 3.47413 3.50048 3.52929 3.55398 3.94996 4.07660 4.51849 4.57569 4.64945 4.69560 4.90641 4.97636 5.03712 5.15205 5.21106 5.28305 5.44794 5.46205 5.59723 5.67299 5.74274 5.77043 5.80893 6.00618 6.07459 6.08650 6.11899 6.19753 6.20845 6.31701 6.33629 6.41288 6.51123 6.60513 6.65162 6.66389 6.95939 7.08133 7.17881 7.78588 7.87920 8.04778 8.49800 8.61491 9.61273 10.19058 10.54979 11.53107 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.004567 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.990686 B = 6129.041140 C = 8207.398003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.201 3.799 3 C 0.140 3.860 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.938 5.938 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.710 5.710 14 C 0.566 3.434 15 O -0.514 6.514 16 C -0.129 4.129 17 C -0.056 4.056 18 C -0.133 4.133 19 C -0.069 4.069 20 C -0.151 4.151 21 C 0.565 3.435 22 N -0.853 5.853 23 O -0.534 6.534 24 C 0.000 4.000 25 C -0.143 4.143 26 C -0.157 4.157 27 C -0.186 4.186 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.051 0.949 33 H 0.381 0.619 34 H 0.253 0.747 35 H 0.393 0.607 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.400 0.600 40 H 0.404 0.596 41 H 0.150 0.850 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 -19.617 -2.734 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.115 3.885 3 C 0.012 3.988 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.362 5.362 14 C 0.353 3.647 15 O -0.390 6.390 16 C -0.132 4.132 17 C -0.075 4.075 18 C -0.151 4.151 19 C -0.088 4.088 20 C -0.154 4.154 21 C 0.352 3.648 22 N -0.417 5.417 23 O -0.410 6.410 24 C -0.020 4.020 25 C -0.163 4.163 26 C -0.194 4.194 27 C -0.223 4.223 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.215 0.785 34 H 0.063 0.937 35 H 0.228 0.772 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.229 0.771 40 H 0.236 0.764 41 H 0.167 0.833 42 H 0.126 0.874 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.030 -18.730 -1.501 19.217 hybrid contribution -0.264 0.569 -1.335 1.475 sum 3.766 -18.160 -2.836 18.762 Atomic orbital electron populations 1.21988 0.93067 1.01326 1.04138 1.20080 0.93690 0.92570 0.82123 1.21107 0.98928 0.87725 0.91018 1.42236 1.61211 1.10462 1.23091 1.19196 1.24887 0.87617 1.04296 0.91418 1.24652 1.00809 0.98129 0.97473 1.69632 1.39838 1.36090 1.13173 0.86294 0.77900 0.85247 0.76974 1.21385 1.21809 1.21367 1.45880 1.06957 1.56477 1.26845 1.17818 0.82698 0.78962 0.85239 1.90775 1.54827 1.45406 1.48027 1.20110 0.93984 1.02556 0.96567 1.21577 0.99638 0.93329 0.92933 1.21018 0.95428 1.01245 0.97408 1.21390 0.93313 0.96281 0.97777 1.19776 0.92809 1.05649 0.97213 1.18241 0.88303 0.76999 0.81305 1.43724 1.12281 1.64042 1.21692 1.90853 1.56254 1.45983 1.47947 1.21391 0.94909 0.91059 0.94635 1.22526 1.04125 0.90234 0.99366 1.22902 0.92470 1.01958 1.02112 1.22973 0.97837 1.00023 1.01482 0.92882 0.90726 0.90914 0.95909 0.93083 0.78471 0.93742 0.77193 0.84995 0.84712 0.85440 0.77063 0.76446 0.83269 0.87402 0.89064 0.89536 0.89415 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.18 37.16 0.30 -1.84 16 2 C 0.20 3.28 0.55 -131.82 -0.07 3.20 16 3 C 0.14 3.01 4.83 -4.04 -0.02 2.99 16 4 N -0.73 -18.42 5.17 -59.91 -0.31 -18.73 16 5 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 6 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.19 13.06 55.49 0.72 -27.46 16 9 Si 0.90 23.13 29.55 -169.99 -5.02 18.10 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.71 -10.88 4.13 -48.54 -0.20 -11.08 16 14 C 0.57 9.82 5.04 -12.32 -0.06 9.76 16 15 O -0.51 -10.60 12.28 5.32 0.07 -10.53 16 16 C -0.13 -1.94 5.87 -105.02 -0.62 -2.56 16 17 C -0.06 -0.65 9.53 -39.10 -0.37 -1.03 16 18 C -0.13 -1.25 10.02 -39.70 -0.40 -1.65 16 19 C -0.07 -0.63 9.54 -39.10 -0.37 -1.01 16 20 C -0.15 -1.91 5.87 -105.02 -0.62 -2.53 16 21 C 0.57 7.23 8.05 -12.33 -0.10 7.13 16 22 N -0.85 -6.44 8.82 30.53 0.27 -6.17 16 23 O -0.53 -9.22 17.18 5.32 0.09 -9.12 16 24 C 0.00 0.00 9.14 -38.78 -0.35 -0.36 16 25 C -0.14 -2.10 4.81 -90.63 -0.44 -2.53 16 26 C -0.16 -2.22 8.27 -26.73 -0.22 -2.44 16 27 C -0.19 -2.22 9.68 -26.74 -0.26 -2.47 16 28 H 0.05 0.62 6.92 -51.93 -0.36 0.26 16 29 H 0.07 1.24 6.86 -51.93 -0.36 0.89 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 1.24 5.96 -51.93 -0.31 0.93 16 33 H 0.38 9.82 6.35 -40.82 -0.26 9.56 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.39 4.98 6.52 -40.82 -0.27 4.72 16 36 H 0.13 1.27 6.40 -52.49 -0.34 0.93 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.66 6.39 -52.49 -0.34 0.33 16 39 H 0.40 1.72 6.85 -40.82 -0.28 1.45 16 40 H 0.40 2.51 8.93 -40.82 -0.36 2.14 16 41 H 0.15 2.63 7.23 -52.48 -0.38 2.25 16 42 H 0.11 1.61 8.06 -51.93 -0.42 1.19 16 43 H 0.09 1.36 5.13 -51.93 -0.27 1.09 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 0.98 7.21 -51.93 -0.37 0.61 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -36.87 371.96 -8.58 -45.45 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -5.96 Total: 16.54 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.84 Total: -2.61 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.48 Total: -63.43 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.66 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.87 -8.58 -45.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.938 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds