Wall clock time and date at job start Tue Mar 31 2020 16:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 N 1.46504 * 109.47227 * 300.00323 * 3 2 1 5 5 C 1.36936 * 119.99987 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00320 * 359.97438 * 5 4 3 7 7 C 1.38820 * 119.99785 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99876 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99913 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47425 * 59.99525 * 9 7 5 11 11 H 1.48498 * 109.46829 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46802 * 299.99641 * 9 7 5 13 13 N 1.46501 * 109.46974 * 240.00143 * 2 1 3 14 14 C 1.34781 * 119.99628 * 174.49050 * 13 2 1 15 15 O 1.21549 * 120.00385 * 5.21696 * 14 13 2 16 16 C 1.47864 * 119.99715 * 185.20938 * 14 13 2 17 17 C 1.39701 * 120.07192 * 359.72654 * 16 14 13 18 18 C 1.38058 * 120.14402 * 179.78679 * 17 16 14 19 19 C 1.38105 * 120.29789 * 0.46772 * 18 17 16 20 20 C 1.39665 * 120.14016 * 359.78939 * 19 18 17 21 21 C 1.47861 * 120.07312 * 179.97438 * 20 19 18 22 22 N 1.34769 * 120.00087 * 0.02562 * 21 20 19 23 23 O 1.21558 * 119.99760 * 180.02562 * 21 20 19 24 24 C 1.39294 * 120.07331 * 180.02562 * 16 14 13 25 25 C 1.52997 * 109.47116 * 120.00002 * 2 1 3 26 26 C 1.52997 * 117.49744 * 122.28195 * 25 2 1 27 27 C 1.52995 * 59.99955 * 252.51051 * 26 25 2 28 28 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47134 * 59.99808 * 1 2 3 30 30 H 1.09001 * 109.47086 * 300.00219 * 1 2 3 31 31 H 1.09001 * 109.47249 * 59.99880 * 3 2 1 32 32 H 1.08997 * 109.47642 * 179.97438 * 3 2 1 33 33 H 0.97001 * 119.99910 * 359.97438 * 4 3 2 34 34 H 0.97000 * 119.99960 * 180.02562 * 8 7 5 35 35 H 0.96992 * 120.00346 * 354.49173 * 13 2 1 36 36 H 1.07998 * 119.93064 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.85586 * 180.21564 * 18 17 16 38 38 H 1.07989 * 119.93288 * 179.76406 * 19 18 17 39 39 H 0.97003 * 120.00215 * 0.02562 * 22 21 20 40 40 H 0.97004 * 120.00354 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.14556 * 359.96079 * 24 16 14 42 42 H 1.09000 * 115.54984 * 267.98373 * 25 2 1 43 43 H 1.09005 * 117.50094 * 359.97438 * 26 25 2 44 44 H 1.09005 * 117.50289 * 145.01718 * 26 25 2 45 45 H 1.09002 * 117.49951 * 252.51053 * 27 26 25 46 46 H 1.08993 * 117.50332 * 107.49008 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4131 6 1 2.5039 3.9689 -0.7022 7 6 1.4197 4.0986 -2.5462 8 7 0.6625 3.4591 -3.4123 9 14 1.8710 5.8870 -2.8419 10 1 3.3476 6.0167 -2.9310 11 1 1.2553 6.3494 -4.1116 12 1 1.3681 6.7167 -1.7175 13 7 2.0183 -0.6906 -1.1962 14 6 3.3383 -0.7175 -1.4670 15 8 4.1315 -0.2522 -0.6722 16 6 3.8216 -1.3134 -2.7311 17 6 2.9118 -1.8539 -3.6430 18 6 3.3610 -2.4066 -4.8257 19 6 4.7119 -2.4379 -5.1112 20 6 5.6326 -1.9058 -4.2058 21 6 7.0785 -1.9407 -4.5128 22 7 7.5093 -2.4858 -5.6676 23 8 7.8787 -1.4776 -3.7235 24 6 5.1855 -1.3425 -3.0124 25 6 2.0400 -0.7212 1.2492 26 6 2.9588 -1.9271 1.0431 27 6 1.5173 -2.1350 1.5115 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9942 1.6617 -1.8348 34 1 0.3391 3.9163 -4.2043 35 1 1.3917 -1.1284 -1.7933 36 1 1.8543 -1.8359 -3.4242 37 1 2.6533 -2.8200 -5.5289 38 1 5.0571 -2.8751 -6.0364 39 1 6.8708 -2.8550 -6.2975 40 1 8.4580 -2.5090 -5.8688 41 1 5.8934 -0.9298 -2.3088 42 1 2.2293 -0.0859 2.1145 43 1 3.1996 -2.2069 0.0174 44 1 3.7530 -2.0853 1.7727 45 1 1.3629 -2.4300 2.5495 46 1 0.8100 -2.5512 0.7943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267856537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:51 Heat of formation + Delta-G solvation = -23.149750 kcal Electronic energy + Delta-G solvation = -28997.974008 eV Core-core repulsion = 25080.972477 eV Total energy + Delta-G solvation = -3917.001531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90173 -40.97287 -39.31986 -38.10658 -36.60454 -35.10268 -34.90299 -33.44075 -32.08905 -32.04336 -30.85231 -27.66854 -25.67837 -25.34321 -24.81999 -23.10827 -22.91177 -22.31733 -21.35606 -20.31197 -19.59095 -19.26540 -18.10189 -17.60330 -17.29120 -17.04757 -16.90897 -16.37103 -15.98281 -15.86676 -15.52065 -15.33930 -15.29622 -14.98320 -14.78617 -14.68810 -14.54958 -13.70465 -13.54449 -13.34105 -13.27287 -13.01343 -12.95742 -12.78720 -12.46569 -12.38683 -12.27680 -12.14602 -11.99844 -11.77528 -11.34433 -11.25165 -11.09345 -10.95748 -10.80849 -10.48617 -10.14033 -10.07478 -9.87909 -8.93040 -7.95375 -5.20563 -0.37293 0.00629 1.43004 1.45908 1.51705 1.57052 2.04033 2.20068 2.48357 2.54386 2.88708 2.97263 3.37479 3.64352 3.66667 3.74255 3.82908 3.98712 4.00291 4.06650 4.12017 4.17939 4.35724 4.36707 4.38469 4.55052 4.63096 4.81163 4.85565 4.87943 4.91417 4.97611 5.08789 5.14504 5.18896 5.22695 5.26305 5.30088 5.32835 5.38363 5.46844 5.68059 5.73682 5.83088 6.28037 6.36468 6.64695 7.23421 7.34309 7.35977 8.09109 8.39570 9.27315 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.004567 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.990686 B = 6129.041140 C = 8207.398003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.209 3.791 3 C 0.141 3.859 4 N -0.727 5.727 5 C -0.247 4.247 6 H 0.058 0.942 7 C -0.064 4.064 8 N -0.959 5.959 9 Si 0.964 3.036 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.699 5.699 14 C 0.559 3.441 15 O -0.562 6.562 16 C -0.156 4.156 17 C -0.056 4.056 18 C -0.121 4.121 19 C -0.047 4.047 20 C -0.163 4.163 21 C 0.560 3.440 22 N -0.822 5.822 23 O -0.594 6.594 24 C -0.031 4.031 25 C -0.163 4.163 26 C -0.170 4.170 27 C -0.146 4.146 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.018 0.982 33 H 0.379 0.621 34 H 0.252 0.748 35 H 0.408 0.592 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.180 0.820 39 H 0.420 0.580 40 H 0.414 0.586 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 -22.057 -5.115 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.123 3.877 3 C 0.014 3.986 4 N -0.370 5.370 5 C -0.379 4.379 6 H 0.076 0.924 7 C -0.257 4.257 8 N -0.610 5.610 9 Si 0.794 3.206 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.351 5.351 14 C 0.348 3.652 15 O -0.441 6.441 16 C -0.159 4.159 17 C -0.075 4.075 18 C -0.138 4.138 19 C -0.065 4.065 20 C -0.166 4.166 21 C 0.347 3.653 22 N -0.387 5.387 23 O -0.475 6.475 24 C -0.051 4.051 25 C -0.183 4.183 26 C -0.208 4.208 27 C -0.183 4.183 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.213 0.787 34 H 0.061 0.939 35 H 0.245 0.755 36 H 0.171 0.829 37 H 0.199 0.801 38 H 0.197 0.803 39 H 0.253 0.747 40 H 0.247 0.753 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.127 0.873 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.980 -21.223 -3.931 21.674 hybrid contribution 0.422 1.279 -0.649 1.495 sum 2.402 -19.943 -4.580 20.603 Atomic orbital electron populations 1.21925 0.91067 1.03501 1.03108 1.19890 0.94903 0.89484 0.83420 1.21119 0.96948 0.91240 0.89316 1.42258 1.61019 1.09655 1.24116 1.19469 1.24757 0.89229 1.04414 0.92375 1.25345 1.01136 1.01869 0.97346 1.69747 1.40533 1.37318 1.13360 0.85360 0.77240 0.80957 0.77090 1.21678 1.21238 1.20427 1.45759 1.06660 1.55884 1.26807 1.18324 0.82874 0.78284 0.85738 1.90743 1.56043 1.47614 1.49744 1.20003 0.94368 1.04851 0.96713 1.21903 1.00042 0.92474 0.93038 1.21583 0.96252 0.99282 0.96723 1.21941 0.92715 0.93692 0.98165 1.19862 0.93536 1.06197 0.96984 1.18416 0.88118 0.76786 0.81991 1.43456 1.13445 1.61784 1.20004 1.90827 1.57536 1.48938 1.50206 1.21200 0.94759 0.93362 0.95829 1.22414 1.06119 0.91379 0.98346 1.22854 0.94034 1.02237 1.01632 1.23080 0.95871 0.96206 1.03097 0.89007 0.92923 0.90729 0.96348 0.96441 0.78714 0.93902 0.75460 0.82885 0.80073 0.80293 0.74674 0.75304 0.87575 0.88303 0.90103 0.90104 0.87296 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.18 71.98 0.59 -3.24 16 2 C 0.21 6.91 0.55 3.60 0.00 6.92 16 3 C 0.14 6.40 4.83 86.38 0.42 6.81 16 4 N -0.73 -38.23 5.17 -343.44 -1.78 -40.01 16 5 C -0.25 -14.65 9.99 84.04 0.84 -13.81 16 6 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 7 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 8 N -0.96 -57.90 13.06 21.65 0.28 -57.62 16 9 Si 0.96 48.06 29.55 68.60 2.03 50.09 16 10 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 13 N -0.70 -21.70 4.13 -425.75 -1.76 -23.45 16 14 C 0.56 20.63 5.04 86.79 0.44 21.07 16 15 O -0.56 -25.52 12.28 -3.87 -0.05 -25.57 16 16 C -0.16 -4.89 5.87 -20.12 -0.12 -5.01 16 17 C -0.06 -1.19 9.53 22.58 0.22 -0.98 16 18 C -0.12 -1.74 10.02 22.20 0.22 -1.52 16 19 C -0.05 -0.68 9.54 22.58 0.22 -0.47 16 20 C -0.16 -4.07 5.87 -20.12 -0.12 -4.18 16 21 C 0.56 14.40 8.05 86.79 0.70 15.10 16 22 N -0.82 -10.55 8.82 -175.59 -1.55 -12.10 16 23 O -0.59 -21.99 17.18 -3.90 -0.07 -22.06 16 24 C -0.03 -1.05 9.14 22.79 0.21 -0.84 16 25 C -0.16 -4.81 4.81 -10.80 -0.05 -4.87 16 26 C -0.17 -4.88 8.27 30.59 0.25 -4.63 16 27 C -0.15 -3.12 9.68 30.59 0.30 -2.82 16 28 H 0.09 1.82 6.92 -2.39 -0.02 1.80 16 29 H 0.05 1.71 6.86 -2.38 -0.02 1.69 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.02 0.93 5.96 -2.39 -0.01 0.91 16 33 H 0.38 19.99 6.35 -92.71 -0.59 19.40 16 34 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.41 9.87 6.52 -92.71 -0.60 9.27 16 36 H 0.15 2.50 6.40 -2.91 -0.02 2.48 16 37 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.18 0.70 6.39 -2.92 -0.02 0.68 16 39 H 0.42 1.85 6.85 -92.71 -0.64 1.21 16 40 H 0.41 4.32 8.93 -92.71 -0.83 3.49 16 41 H 0.11 4.38 7.23 -2.91 -0.02 4.36 16 42 H 0.10 3.06 8.06 -2.39 -0.02 3.04 16 43 H 0.08 2.50 5.13 -2.38 -0.01 2.49 16 44 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.11 1.94 7.21 -2.39 -0.02 1.92 16 Total: -1.00 -88.02 371.96 0.10 -87.93 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.58 Total: 38.57 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.57 Total: 4.21 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -4.80 Total: -133.18 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.11 Total: -47.63 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -88.02 0.10 -87.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267856537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.777 kcal (2) G-P(sol) polarization free energy of solvation -88.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds