Wall clock time and date at job start Tue Mar 31 2020 16:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 N 1.46501 * 109.47069 * 299.99629 * 3 2 1 5 5 C 1.36937 * 120.00577 * 179.97438 * 4 3 2 6 6 H 1.08006 * 119.99231 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00505 * 180.02562 * 5 4 3 8 8 N 1.31613 * 120.00126 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99803 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46814 * 90.00046 * 9 7 5 11 11 H 1.48495 * 109.47134 * 209.99616 * 9 7 5 12 12 H 1.48497 * 109.47106 * 330.00049 * 9 7 5 13 13 N 1.46495 * 109.47383 * 239.99619 * 2 1 3 14 14 C 1.34775 * 120.00351 * 175.43928 * 13 2 1 15 15 O 1.21525 * 119.99915 * 355.83371 * 14 13 2 16 16 C 1.48032 * 120.00143 * 175.83081 * 14 13 2 17 17 C 1.39557 * 120.00137 * 180.02562 * 16 14 13 18 18 C 1.37821 * 120.00040 * 180.02562 * 17 16 14 19 19 C 1.39551 * 119.99768 * 359.97438 * 18 17 16 20 20 C 1.48041 * 119.99577 * 180.02562 * 19 18 17 21 21 N 1.34776 * 120.00045 * 180.02562 * 20 19 18 22 22 O 1.21533 * 119.99928 * 359.97438 * 20 19 18 23 23 C 1.39552 * 120.00285 * 0.27530 * 19 18 17 24 24 C 1.37812 * 119.99839 * 359.46922 * 23 19 18 25 25 C 1.53003 * 109.47071 * 119.99427 * 2 1 3 26 26 C 1.53001 * 117.49433 * 121.78632 * 25 2 1 27 27 C 1.53004 * 117.49560 * 53.12948 * 25 2 1 28 28 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47013 * 300.00043 * 1 2 3 30 30 H 1.08994 * 109.46831 * 60.00265 * 1 2 3 31 31 H 1.08993 * 109.47721 * 59.99597 * 3 2 1 32 32 H 1.09004 * 109.47340 * 180.02562 * 3 2 1 33 33 H 0.97010 * 120.00065 * 0.02562 * 4 3 2 34 34 H 0.97003 * 120.00283 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00069 * 355.44310 * 13 2 1 36 36 H 1.08006 * 119.99553 * 359.97438 * 17 16 14 37 37 H 1.07996 * 119.99399 * 179.97438 * 18 17 16 38 38 H 0.97005 * 119.99486 * 359.97438 * 21 20 19 39 39 H 0.96996 * 120.00364 * 179.72534 * 21 20 19 40 40 H 1.08002 * 119.99702 * 179.69624 * 23 19 18 41 41 H 1.08004 * 120.00349 * 180.22909 * 24 23 19 42 42 H 1.08998 * 115.55053 * 267.45425 * 25 2 1 43 43 H 1.09000 * 117.50062 * 0.02562 * 26 25 2 44 44 H 1.09002 * 117.49589 * 145.02036 * 26 25 2 45 45 H 1.09001 * 117.49121 * 214.97673 * 27 25 2 46 46 H 1.08992 * 117.50138 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8820 3.4442 -1.4128 6 1 2.5029 3.9691 -0.7018 7 6 1.4189 4.0987 -2.5459 8 7 1.7368 5.3587 -2.7543 9 14 0.3444 3.1909 -3.7752 10 1 -1.0832 3.3546 -3.4004 11 1 0.5666 3.7485 -5.1334 12 1 0.6956 1.7481 -3.7689 13 7 2.0184 -0.6907 -1.1961 14 6 3.3400 -0.7341 -1.4568 15 8 4.1203 -0.1367 -0.7419 16 6 3.8410 -1.5094 -2.6140 17 6 5.2095 -1.5548 -2.8837 18 6 5.6759 -2.2762 -3.9614 19 6 4.7798 -2.9618 -4.7826 20 6 5.2809 -3.7372 -5.9399 21 7 4.4154 -4.3989 -6.7334 22 8 6.4726 -3.7763 -6.1750 23 6 3.4109 -2.9121 -4.5160 24 6 2.9449 -2.1951 -3.4353 25 6 2.0400 -0.7211 1.2493 26 6 2.9495 -1.9341 1.0430 27 6 1.5077 -2.1301 1.5184 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 0.9937 1.6617 -1.8346 34 1 1.4129 5.8162 -3.5460 35 1 1.3906 -1.1167 -1.8005 36 1 5.9030 -1.0238 -2.2483 37 1 6.7350 -2.3109 -4.1703 38 1 3.4642 -4.3673 -6.5459 39 1 4.7433 -4.9036 -7.4939 40 1 2.7170 -3.4387 -5.1545 41 1 1.8858 -2.1596 -3.2267 42 1 2.2379 -0.0846 2.1117 43 1 3.1848 -2.2180 0.0173 44 1 3.7455 -2.0957 1.7699 45 1 1.3558 -2.4206 2.5580 46 1 0.7939 -2.5431 0.8058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267864981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:57 Heat of formation + Delta-G solvation = -19.767337 kcal Electronic energy + Delta-G solvation = -28907.746924 eV Core-core repulsion = 24990.892065 eV Total energy + Delta-G solvation = -3916.854859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.94747 -41.00875 -39.37754 -38.13385 -36.72701 -35.05754 -34.96114 -33.67512 -32.41080 -31.96291 -31.08086 -27.90338 -26.21767 -25.23409 -23.70861 -23.14889 -22.94732 -22.60488 -21.37589 -20.50998 -19.77383 -19.46073 -18.63048 -17.84274 -17.31625 -16.84060 -16.48465 -16.21096 -16.13559 -15.91773 -15.56168 -15.49321 -15.19145 -15.06044 -14.82399 -14.69464 -14.54005 -13.81610 -13.62840 -13.54755 -13.40438 -13.37337 -13.20112 -12.83031 -12.40904 -12.32072 -12.20345 -12.09708 -11.95648 -11.80971 -11.37134 -11.23859 -11.13655 -10.96311 -10.78796 -10.53274 -10.19414 -10.13331 -9.94577 -9.22172 -8.01704 -5.34374 -0.63745 0.25236 1.31084 1.40145 1.40770 1.47333 2.07080 2.16772 2.42485 2.48628 2.83376 2.94666 3.28936 3.51885 3.57048 3.66017 3.82888 3.90075 3.95579 3.97085 4.05024 4.20026 4.26156 4.28602 4.35413 4.53355 4.58536 4.81462 4.82724 4.85902 4.90587 4.96816 5.04961 5.09005 5.16193 5.20229 5.22920 5.30214 5.31691 5.35943 5.62187 5.67190 5.76540 5.82576 6.20878 6.35380 6.60484 7.08931 7.22093 7.30947 7.82978 8.07805 9.20831 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009472 B = 0.004284 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.319094 B = 6534.741548 C = 8337.977933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.207 3.793 3 C 0.141 3.859 4 N -0.742 5.742 5 C -0.232 4.232 6 H 0.041 0.959 7 C -0.070 4.070 8 N -0.989 5.989 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.299 1.299 12 H -0.244 1.244 13 N -0.704 5.704 14 C 0.556 3.444 15 O -0.554 6.554 16 C -0.118 4.118 17 C -0.084 4.084 18 C -0.077 4.077 19 C -0.127 4.127 20 C 0.562 3.438 21 N -0.824 5.824 22 O -0.586 6.586 23 C -0.075 4.075 24 C -0.089 4.089 25 C -0.164 4.164 26 C -0.176 4.176 27 C -0.143 4.143 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.367 0.633 34 H 0.257 0.743 35 H 0.411 0.589 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.419 0.581 39 H 0.415 0.585 40 H 0.181 0.819 41 H 0.166 0.834 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 -28.313 -2.358 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.120 3.880 3 C 0.014 3.986 4 N -0.389 5.389 5 C -0.363 4.363 6 H 0.060 0.940 7 C -0.260 4.260 8 N -0.640 5.640 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.226 1.226 12 H -0.168 1.168 13 N -0.357 5.357 14 C 0.344 3.656 15 O -0.432 6.432 16 C -0.121 4.121 17 C -0.103 4.103 18 C -0.096 4.096 19 C -0.130 4.130 20 C 0.348 3.652 21 N -0.389 5.389 22 O -0.467 6.467 23 C -0.093 4.093 24 C -0.108 4.108 25 C -0.184 4.184 26 C -0.213 4.213 27 C -0.180 4.180 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.202 0.798 34 H 0.066 0.934 35 H 0.249 0.751 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.252 0.748 39 H 0.248 0.752 40 H 0.198 0.802 41 H 0.183 0.817 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.125 0.875 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.129 -27.643 -1.779 28.007 hybrid contribution -0.260 0.515 -1.023 1.174 sum -4.389 -27.129 -2.802 27.624 Atomic orbital electron populations 1.22017 0.90800 1.04074 1.03402 1.19945 0.95174 0.89306 0.83538 1.21206 0.97934 0.90945 0.88493 1.42420 1.61996 1.09289 1.25152 1.18985 1.24789 0.87716 1.04855 0.94045 1.25598 1.03001 0.96825 1.00605 1.69919 1.52033 1.12121 1.29933 0.85340 0.79029 0.79359 0.77692 1.19514 1.22600 1.16789 1.45853 1.06689 1.56575 1.26627 1.18421 0.82910 0.80064 0.84213 1.90755 1.56984 1.44741 1.50742 1.20324 0.95051 0.99883 0.96873 1.21229 0.94955 0.97235 0.96896 1.21244 1.00822 0.94507 0.93000 1.20164 0.95184 1.00824 0.96834 1.18393 0.85583 0.78633 0.82605 1.43542 1.11421 1.52403 1.31493 1.90812 1.17905 1.64388 1.73599 1.21616 0.93617 0.97329 0.96739 1.21608 1.00625 0.94885 0.93654 1.22415 1.06260 0.91385 0.98330 1.22936 0.94406 1.02097 1.01868 1.23086 0.95735 0.96048 1.03128 0.88449 0.90411 0.92659 0.96012 0.95109 0.79838 0.93434 0.75150 0.85602 0.84694 0.74763 0.75226 0.80154 0.81666 0.88284 0.89621 0.89941 0.87491 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.18 71.98 0.59 -2.58 16 2 C 0.21 5.76 0.55 3.61 0.00 5.76 16 3 C 0.14 5.82 4.84 86.38 0.42 6.24 16 4 N -0.74 -35.29 4.98 -343.45 -1.71 -37.00 16 5 C -0.23 -13.93 10.47 84.03 0.88 -13.05 16 6 H 0.04 2.81 8.06 -2.91 -0.02 2.78 16 7 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 8 N -0.99 -65.48 13.97 21.65 0.30 -65.18 16 9 Si 0.96 44.73 27.74 68.60 1.90 46.63 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.24 -9.74 6.52 99.48 0.65 -9.10 16 13 N -0.70 -17.70 4.15 -425.60 -1.77 -19.47 16 14 C 0.56 17.13 4.79 86.84 0.42 17.54 16 15 O -0.55 -22.15 12.61 -3.79 -0.05 -22.20 16 16 C -0.12 -2.97 5.88 -20.04 -0.12 -3.09 16 17 C -0.08 -2.26 9.58 22.49 0.22 -2.05 16 18 C -0.08 -1.84 9.58 22.49 0.22 -1.62 16 19 C -0.13 -2.39 5.88 -20.04 -0.12 -2.51 16 20 C 0.56 10.72 8.05 86.84 0.70 11.42 16 21 N -0.82 -6.84 8.82 -175.47 -1.55 -8.39 16 22 O -0.59 -16.78 17.17 -3.82 -0.07 -16.85 16 23 C -0.07 -0.92 9.53 22.49 0.21 -0.71 16 24 C -0.09 -1.41 9.52 22.49 0.21 -1.20 16 25 C -0.16 -4.09 4.86 -10.79 -0.05 -4.14 16 26 C -0.18 -4.14 8.53 30.62 0.26 -3.88 16 27 C -0.14 -2.42 9.68 30.62 0.30 -2.12 16 28 H 0.10 1.34 6.89 -2.39 -0.02 1.32 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.35 6.86 -2.39 -0.02 1.33 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.03 1.50 5.72 -2.39 -0.01 1.49 16 33 H 0.37 15.78 4.21 -92.70 -0.39 15.39 16 34 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 35 H 0.41 7.12 6.51 -92.70 -0.60 6.52 16 36 H 0.13 3.75 7.64 -2.91 -0.02 3.73 16 37 H 0.14 3.31 7.64 -2.91 -0.02 3.29 16 38 H 0.42 0.43 6.85 -92.70 -0.64 -0.21 16 39 H 0.42 2.52 8.93 -92.71 -0.83 1.69 16 40 H 0.18 0.35 6.39 -2.91 -0.02 0.34 16 41 H 0.17 1.45 6.40 -2.91 -0.02 1.43 16 42 H 0.10 2.68 8.06 -2.39 -0.02 2.66 16 43 H 0.09 2.12 5.16 -2.39 -0.01 2.11 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.11 1.44 7.17 -2.39 -0.02 1.42 16 Total: -1.00 -89.54 368.94 0.22 -89.32 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -1.44 Total: 32.85 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 4.60 Total: 0.28 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -4.72 Total: -130.03 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.11 Total: -39.05 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Total: -89.54 0.22 -89.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267864981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.556 kcal (2) G-P(sol) polarization free energy of solvation -89.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds