Wall clock time and date at job start Tue Mar 31 2020 16:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 N 1.46496 * 109.47149 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99975 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00220 * 0.02562 * 5 4 3 7 7 C 1.38815 * 119.99943 * 179.97438 * 5 4 3 8 8 N 1.31621 * 120.00224 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47192 * 120.00259 * 9 7 5 12 12 H 1.48500 * 109.47170 * 240.00167 * 9 7 5 13 13 N 1.46500 * 109.47375 * 119.99991 * 2 1 3 14 14 C 1.34775 * 120.00229 * 295.84135 * 13 2 1 15 15 O 1.21359 * 119.99882 * 4.93376 * 14 13 2 16 16 C 1.49352 * 120.00081 * 184.93616 * 14 13 2 17 17 O 1.21372 * 119.99925 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99848 * 179.97438 * 16 14 13 19 19 C 1.39734 * 119.99787 * 175.31244 * 18 16 14 20 20 C 1.38928 * 120.07542 * 214.93657 * 19 18 16 21 21 C 1.38091 * 119.92134 * 179.81148 * 20 19 18 22 22 C 1.38294 * 120.07866 * 0.44727 * 21 20 19 23 23 C 1.38291 * 120.15052 * 359.78270 * 22 21 20 24 24 C 1.38099 * 120.07533 * 0.02562 * 23 22 21 25 25 C 1.53000 * 109.46770 * 240.00261 * 2 1 3 26 26 C 1.52994 * 117.50342 * 13.35554 * 25 2 1 27 27 C 1.52990 * 117.50021 * 304.69573 * 25 2 1 28 28 H 1.09008 * 109.47222 * 299.99912 * 1 2 3 29 29 H 1.08997 * 109.47605 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47757 * 59.99490 * 1 2 3 31 31 H 1.08994 * 109.47420 * 300.00525 * 3 2 1 32 32 H 1.09008 * 109.47004 * 59.99955 * 3 2 1 33 33 H 0.96999 * 120.00042 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00298 * 179.97438 * 8 7 5 35 35 H 0.97006 * 119.99495 * 115.83641 * 13 2 1 36 36 H 0.96993 * 120.00169 * 355.31106 * 18 16 14 37 37 H 1.08004 * 120.03749 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.95875 * 180.20982 * 21 20 19 39 39 H 1.07998 * 119.92233 * 179.76933 * 22 21 20 40 40 H 1.07995 * 119.96218 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.03930 * 179.97438 * 24 23 22 42 42 H 1.09005 * 115.54550 * 159.03030 * 25 2 1 43 43 H 1.09004 * 117.49423 * 0.02562 * 26 25 2 44 44 H 1.09005 * 117.50098 * 145.01618 * 26 25 2 45 45 H 1.09012 * 117.49888 * 214.98166 * 27 25 2 46 46 H 1.09001 * 117.50216 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1896 2.6284 -0.0002 6 1 3.6496 3.5637 0.0010 7 6 5.5777 2.6284 -0.0002 8 7 6.2359 1.4886 -0.0012 9 14 6.5117 4.2462 -0.0004 10 1 5.5467 5.3748 0.0002 11 1 7.3656 4.3249 1.2120 12 1 7.3654 4.3248 -1.2129 13 7 2.0183 -0.6906 1.1961 14 6 1.7634 -0.1834 2.4185 15 8 1.0544 0.7948 2.5337 16 6 2.3534 -0.8251 3.6312 17 8 3.0628 -1.8031 3.5159 18 7 2.0988 -0.3175 4.8535 19 6 2.5691 -0.9734 5.9942 20 6 1.8141 -0.9698 7.1604 21 6 2.2801 -1.6223 8.2847 22 6 3.5010 -2.2711 8.2534 23 6 4.2573 -2.2726 7.0956 24 6 3.7955 -1.6254 5.9665 25 6 2.0399 -0.7212 -1.2493 26 6 1.0305 -1.0028 -2.3640 27 6 1.5470 -2.1492 -1.4913 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3635 0.5139 -0.8899 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 3.9899 0.6025 -0.0006 34 1 7.2059 1.4886 -0.0016 35 1 2.5252 -1.5130 1.1083 36 1 1.5892 0.5031 4.9414 37 1 0.8622 -0.4601 7.1867 38 1 1.6921 -1.6228 9.1906 39 1 3.8648 -2.7775 9.1352 40 1 5.2105 -2.7799 7.0747 41 1 4.3868 -1.6266 5.0627 42 1 3.0624 -0.4849 -1.5440 43 1 0.0031 -0.6738 -2.2075 44 1 1.3889 -0.9520 -3.3922 45 1 2.2451 -2.8524 -1.9456 46 1 0.8598 -2.5751 -0.7602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269622099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:01 Heat of formation + Delta-G solvation = 10.286125 kcal Electronic energy + Delta-G solvation = -28706.937951 eV Core-core repulsion = 24791.386309 eV Total energy + Delta-G solvation = -3915.551643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.02199 -39.84436 -38.47583 -37.55220 -35.15450 -34.59748 -33.47245 -31.27458 -30.99625 -29.93053 -29.60955 -26.03404 -25.15753 -23.58515 -22.90192 -22.43370 -22.08320 -21.84220 -20.08774 -18.98358 -18.57018 -17.47769 -17.17493 -16.57262 -16.14739 -15.79129 -15.64711 -15.18042 -14.73582 -14.55096 -14.37087 -14.02801 -13.92237 -13.62073 -13.41178 -13.19024 -12.86126 -12.71419 -12.43399 -12.21843 -11.99884 -11.93397 -11.48398 -11.42303 -11.24759 -11.05185 -10.83693 -10.77798 -10.75742 -10.42784 -10.20749 -10.06441 -9.86645 -9.68664 -9.31696 -9.01068 -8.83670 -8.76628 -8.27500 -6.86247 -5.73676 -3.01185 1.03382 1.31444 1.73066 2.42755 3.38040 3.44762 3.50847 3.52852 3.60844 3.75067 4.08155 4.57906 4.61328 4.75569 4.80539 4.85152 5.04117 5.06017 5.14574 5.29255 5.30350 5.37547 5.42423 5.50129 5.61251 5.62957 5.75923 5.91267 5.94578 5.99243 6.10572 6.18147 6.20628 6.22657 6.24382 6.35503 6.37140 6.43272 6.46483 6.63651 6.74289 6.91479 6.97957 7.07932 7.56963 7.74449 7.85700 8.23013 8.44896 9.56536 10.13454 10.48983 11.49121 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003996 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.237922 B = 7004.487397 C = 9042.440922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.200 3.800 3 C 0.141 3.859 4 N -0.727 5.727 5 C -0.234 4.234 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.675 5.675 14 C 0.520 3.480 15 O -0.514 6.514 16 C 0.512 3.488 17 O -0.499 6.499 18 N -0.649 5.649 19 C 0.145 3.855 20 C -0.143 4.143 21 C -0.105 4.105 22 C -0.137 4.137 23 C -0.102 4.102 24 C -0.118 4.118 25 C -0.152 4.152 26 C -0.170 4.170 27 C -0.183 4.183 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.383 0.617 34 H 0.253 0.747 35 H 0.410 0.590 36 H 0.423 0.577 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 -9.738 9.518 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.115 3.885 3 C 0.013 3.987 4 N -0.372 5.372 5 C -0.365 4.365 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 N -0.327 5.327 14 C 0.300 3.700 15 O -0.391 6.391 16 C 0.294 3.706 17 O -0.372 6.372 18 N -0.295 5.295 19 C 0.051 3.949 20 C -0.163 4.163 21 C -0.123 4.123 22 C -0.155 4.155 23 C -0.120 4.120 24 C -0.138 4.138 25 C -0.170 4.170 26 C -0.207 4.207 27 C -0.220 4.220 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.217 0.783 34 H 0.063 0.937 35 H 0.246 0.754 36 H 0.261 0.739 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.985 -9.525 9.415 17.972 hybrid contribution 0.942 0.660 -0.023 1.151 sum -11.043 -8.865 9.392 16.992 Atomic orbital electron populations 1.22293 0.94373 1.01876 1.03643 1.20209 0.93287 0.93446 0.81594 1.21092 0.86677 0.91222 0.99666 1.42280 0.99068 1.06348 1.89512 1.19260 0.89003 0.86146 1.42102 0.91237 1.24699 0.96336 0.96686 1.03262 1.69663 1.06661 1.23756 1.58135 0.86149 0.79942 0.83216 0.77119 1.20588 1.21993 1.21931 1.45711 1.54907 1.27779 1.04296 1.19521 0.81854 0.84359 0.84272 1.90699 1.36857 1.25351 1.86154 1.20544 0.81327 0.84048 0.84676 1.90751 1.34779 1.25583 1.86069 1.43131 1.54779 1.27830 1.03806 1.17793 0.93441 0.97295 0.86377 1.20929 0.99771 1.02839 0.92796 1.20913 0.96328 0.97429 0.97660 1.21157 0.95378 1.00776 0.98237 1.21097 0.99862 0.98679 0.92402 1.21431 0.94246 0.98308 0.99858 1.22549 1.00937 0.97310 0.96234 1.23064 0.99241 1.02572 0.95845 1.22978 1.04001 0.91488 1.03522 0.90460 0.92675 0.91132 0.95360 0.93447 0.78315 0.93671 0.75435 0.73928 0.85561 0.85715 0.86045 0.85603 0.83978 0.85758 0.88205 0.88741 0.88734 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 7.11 37.16 0.26 -1.97 16 2 C 0.20 3.22 0.54 -131.82 -0.07 3.15 16 3 C 0.14 2.92 4.90 -4.04 -0.02 2.90 16 4 N -0.73 -18.25 5.04 -59.91 -0.30 -18.56 16 5 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 9 Si 0.90 22.80 29.55 -169.99 -5.02 17.78 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 N -0.68 -10.99 4.73 -48.07 -0.23 -11.21 16 14 C 0.52 8.87 7.30 -11.63 -0.08 8.79 16 15 O -0.51 -9.32 12.72 5.49 0.07 -9.26 16 16 C 0.51 8.34 7.73 -11.63 -0.09 8.25 16 17 O -0.50 -8.86 13.92 5.48 0.08 -8.79 16 18 N -0.65 -9.02 5.32 -10.30 -0.05 -9.07 16 19 C 0.14 1.94 6.29 -83.75 -0.53 1.41 16 20 C -0.14 -1.54 9.97 -39.38 -0.39 -1.93 16 21 C -0.10 -1.00 10.04 -39.61 -0.40 -1.39 16 22 C -0.14 -1.34 10.04 -39.54 -0.40 -1.74 16 23 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 24 C -0.12 -1.67 8.70 -39.38 -0.34 -2.01 16 25 C -0.15 -2.28 4.86 -90.63 -0.44 -2.72 16 26 C -0.17 -2.06 9.65 -26.70 -0.26 -2.32 16 27 C -0.18 -2.18 9.74 -26.70 -0.26 -2.44 16 28 H 0.08 1.15 6.31 -51.92 -0.33 0.83 16 29 H 0.05 0.66 6.97 -51.93 -0.36 0.30 16 30 H 0.07 0.87 6.75 -51.93 -0.35 0.52 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.07 6.04 -51.92 -0.31 0.75 16 33 H 0.38 10.02 6.62 -40.82 -0.27 9.75 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.41 6.39 7.87 -40.82 -0.32 6.06 16 36 H 0.42 5.18 8.30 -40.82 -0.34 4.84 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.14 2.29 6.23 -52.49 -0.33 1.97 16 42 H 0.12 2.26 7.08 -51.93 -0.37 1.90 16 43 H 0.10 1.10 5.89 -51.93 -0.31 0.79 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 1.07 8.14 -51.92 -0.42 0.64 16 46 H 0.09 1.03 7.31 -51.93 -0.38 0.65 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -32.60 376.23 -8.90 -41.49 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -6.17 Total: 20.35 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.66 Total: -0.85 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.14 Total: -66.40 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.15 Total: -18.04 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.60 -8.90 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269622099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.780 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds