Wall clock time and date at job start Tue Mar 31 2020 16:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 N 1.46496 * 109.47149 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99975 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00220 * 0.02562 * 5 4 3 7 7 C 1.38815 * 119.99943 * 179.97438 * 5 4 3 8 8 N 1.31621 * 120.00224 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47192 * 120.00259 * 9 7 5 12 12 H 1.48500 * 109.47170 * 240.00167 * 9 7 5 13 13 N 1.46500 * 109.47375 * 119.99991 * 2 1 3 14 14 C 1.34775 * 120.00229 * 295.84135 * 13 2 1 15 15 O 1.21359 * 119.99882 * 4.93376 * 14 13 2 16 16 C 1.49352 * 120.00081 * 184.93616 * 14 13 2 17 17 O 1.21372 * 119.99925 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99848 * 179.97438 * 16 14 13 19 19 C 1.39734 * 119.99787 * 175.31244 * 18 16 14 20 20 C 1.38928 * 120.07542 * 214.93657 * 19 18 16 21 21 C 1.38091 * 119.92134 * 179.81148 * 20 19 18 22 22 C 1.38294 * 120.07866 * 0.44727 * 21 20 19 23 23 C 1.38291 * 120.15052 * 359.78270 * 22 21 20 24 24 C 1.38099 * 120.07533 * 0.02562 * 23 22 21 25 25 C 1.53000 * 109.46770 * 240.00261 * 2 1 3 26 26 C 1.52994 * 117.50342 * 13.35554 * 25 2 1 27 27 C 1.52990 * 117.50021 * 304.69573 * 25 2 1 28 28 H 1.09008 * 109.47222 * 299.99912 * 1 2 3 29 29 H 1.08997 * 109.47605 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47757 * 59.99490 * 1 2 3 31 31 H 1.08994 * 109.47420 * 300.00525 * 3 2 1 32 32 H 1.09008 * 109.47004 * 59.99955 * 3 2 1 33 33 H 0.96999 * 120.00042 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00298 * 179.97438 * 8 7 5 35 35 H 0.97006 * 119.99495 * 115.83641 * 13 2 1 36 36 H 0.96993 * 120.00169 * 355.31106 * 18 16 14 37 37 H 1.08004 * 120.03749 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.95875 * 180.20982 * 21 20 19 39 39 H 1.07998 * 119.92233 * 179.76933 * 22 21 20 40 40 H 1.07995 * 119.96218 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.03930 * 179.97438 * 24 23 22 42 42 H 1.09005 * 115.54550 * 159.03030 * 25 2 1 43 43 H 1.09004 * 117.49423 * 0.02562 * 26 25 2 44 44 H 1.09005 * 117.50098 * 145.01618 * 26 25 2 45 45 H 1.09012 * 117.49888 * 214.98166 * 27 25 2 46 46 H 1.09001 * 117.50216 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1896 2.6284 -0.0002 6 1 3.6496 3.5637 0.0010 7 6 5.5777 2.6284 -0.0002 8 7 6.2359 1.4886 -0.0012 9 14 6.5117 4.2462 -0.0004 10 1 5.5467 5.3748 0.0002 11 1 7.3656 4.3249 1.2120 12 1 7.3654 4.3248 -1.2129 13 7 2.0183 -0.6906 1.1961 14 6 1.7634 -0.1834 2.4185 15 8 1.0544 0.7948 2.5337 16 6 2.3534 -0.8251 3.6312 17 8 3.0628 -1.8031 3.5159 18 7 2.0988 -0.3175 4.8535 19 6 2.5691 -0.9734 5.9942 20 6 1.8141 -0.9698 7.1604 21 6 2.2801 -1.6223 8.2847 22 6 3.5010 -2.2711 8.2534 23 6 4.2573 -2.2726 7.0956 24 6 3.7955 -1.6254 5.9665 25 6 2.0399 -0.7212 -1.2493 26 6 1.0305 -1.0028 -2.3640 27 6 1.5470 -2.1492 -1.4913 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3635 0.5139 -0.8899 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9564 0.8901 33 1 3.9899 0.6025 -0.0006 34 1 7.2059 1.4886 -0.0016 35 1 2.5252 -1.5130 1.1083 36 1 1.5892 0.5031 4.9414 37 1 0.8622 -0.4601 7.1867 38 1 1.6921 -1.6228 9.1906 39 1 3.8648 -2.7775 9.1352 40 1 5.2105 -2.7799 7.0747 41 1 4.3868 -1.6266 5.0627 42 1 3.0624 -0.4849 -1.5440 43 1 0.0031 -0.6738 -2.2075 44 1 1.3889 -0.9520 -3.3922 45 1 2.2451 -2.8524 -1.9456 46 1 0.8598 -2.5751 -0.7602 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269622099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:00 Heat of formation + Delta-G solvation = -11.776473 kcal Electronic energy + Delta-G solvation = -28707.894657 eV Core-core repulsion = 24791.386309 eV Total energy + Delta-G solvation = -3916.508349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26354 -41.02090 -39.53123 -38.80746 -36.45629 -36.13061 -34.99485 -33.10095 -31.87273 -31.36951 -30.68619 -27.63827 -26.53193 -24.98667 -24.17213 -23.79642 -23.17738 -22.83790 -21.27622 -20.35813 -19.74499 -19.25902 -18.49882 -17.75863 -17.25369 -17.00540 -16.88093 -16.70219 -16.23982 -15.84487 -15.64849 -15.37195 -15.05891 -14.91008 -14.90215 -14.31213 -14.22825 -13.87101 -13.80610 -13.71174 -13.26110 -13.15982 -12.94849 -12.84618 -12.51184 -12.42283 -12.24449 -12.17660 -12.02701 -11.94216 -11.79022 -11.45842 -11.26048 -11.10097 -10.94702 -10.53694 -10.17244 -9.89551 -9.24932 -8.97352 -7.96822 -5.24028 -0.04027 0.43869 0.58450 1.22874 1.42942 1.43653 1.53781 2.09088 2.44299 2.53708 2.84689 3.00108 3.30940 3.38694 3.58359 3.83556 3.90924 3.97471 4.04502 4.13395 4.21584 4.29314 4.41185 4.47688 4.51503 4.54405 4.57551 4.75875 4.84604 4.85879 4.95729 5.01542 5.07284 5.08927 5.19138 5.26578 5.28815 5.31208 5.42096 5.45946 5.47620 5.50244 5.59303 5.89631 6.04595 6.24653 6.32005 6.64699 6.90228 7.32095 8.07186 8.32640 9.26334 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003996 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.237922 B = 7004.487397 C = 9042.440922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.207 3.793 3 C 0.141 3.859 4 N -0.733 5.733 5 C -0.241 4.241 6 H 0.069 0.931 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.290 1.290 13 N -0.673 5.673 14 C 0.515 3.485 15 O -0.529 6.529 16 C 0.507 3.493 17 O -0.522 6.522 18 N -0.637 5.637 19 C 0.116 3.884 20 C -0.139 4.139 21 C -0.099 4.099 22 C -0.129 4.129 23 C -0.111 4.111 24 C -0.148 4.148 25 C -0.180 4.180 26 C -0.153 4.153 27 C -0.162 4.162 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.412 0.588 36 H 0.429 0.571 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.877 -10.236 10.818 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.122 3.878 3 C 0.014 3.986 4 N -0.376 5.376 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.798 3.202 10 H -0.192 1.192 11 H -0.223 1.223 12 H -0.217 1.217 13 N -0.324 5.324 14 C 0.295 3.705 15 O -0.406 6.406 16 C 0.289 3.711 17 O -0.397 6.397 18 N -0.284 5.284 19 C 0.023 3.977 20 C -0.159 4.159 21 C -0.117 4.117 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.168 4.168 25 C -0.199 4.199 26 C -0.190 4.190 27 C -0.199 4.199 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.248 0.752 36 H 0.268 0.732 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.907 -10.006 10.727 20.214 hybrid contribution 1.503 0.803 -0.344 1.739 sum -12.404 -9.204 10.383 18.611 Atomic orbital electron populations 1.22233 0.91803 1.03458 1.03767 1.20114 0.94935 0.90680 0.82071 1.21169 0.84175 0.94664 0.98566 1.42384 1.00905 1.05113 1.89216 1.19610 0.89581 0.87202 1.40917 0.91260 1.25471 0.97242 0.99844 1.03857 1.69816 1.06492 1.25730 1.59655 0.85141 0.78546 0.79845 0.76677 1.19249 1.22324 1.21722 1.45783 1.54617 1.27697 1.04285 1.19750 0.81704 0.84235 0.84772 1.90679 1.37585 1.25899 1.86453 1.20484 0.81365 0.83972 0.85246 1.90739 1.35905 1.26646 1.86396 1.43060 1.54060 1.27807 1.03452 1.18055 0.94047 0.98553 0.87013 1.21247 1.00245 1.02505 0.91937 1.21396 0.96274 0.95752 0.98315 1.21566 0.95054 0.99829 0.98322 1.21313 1.00792 0.98526 0.92362 1.21344 0.95006 1.00567 0.99856 1.22261 0.99972 1.00444 0.97219 1.23207 0.99127 1.01431 0.95273 1.23059 1.03526 0.90093 1.03183 0.91810 0.90289 0.89521 0.95261 0.95195 0.79252 0.94139 0.75200 0.73211 0.83263 0.82068 0.82835 0.84440 0.87271 0.89628 0.86343 0.88122 0.88029 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 7.11 71.98 0.51 -3.45 16 2 C 0.21 6.69 0.54 3.60 0.00 6.70 16 3 C 0.14 6.00 4.90 86.38 0.42 6.42 16 4 N -0.73 -38.16 5.04 -343.45 -1.73 -39.89 16 5 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 6 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 7 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 9 Si 0.97 47.71 29.55 68.60 2.03 49.73 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 13 N -0.67 -22.48 4.73 -424.35 -2.01 -24.49 16 14 C 0.52 18.19 7.30 87.24 0.64 18.82 16 15 O -0.53 -19.65 12.72 -3.28 -0.04 -19.69 16 16 C 0.51 17.37 7.73 87.24 0.67 18.04 16 17 O -0.52 -19.73 13.92 -3.32 -0.05 -19.77 16 18 N -0.64 -18.31 5.32 -304.84 -1.62 -19.94 16 19 C 0.12 3.14 6.29 38.21 0.24 3.39 16 20 C -0.14 -2.73 9.97 22.40 0.22 -2.51 16 21 C -0.10 -1.56 10.04 22.25 0.22 -1.33 16 22 C -0.13 -2.19 10.04 22.30 0.22 -1.96 16 23 C -0.11 -2.52 10.04 22.25 0.22 -2.30 16 24 C -0.15 -4.35 8.70 22.40 0.19 -4.16 16 25 C -0.18 -5.38 4.86 -10.80 -0.05 -5.44 16 26 C -0.15 -3.38 9.65 30.61 0.30 -3.09 16 27 C -0.16 -3.56 9.74 30.61 0.30 -3.26 16 28 H 0.06 1.84 6.31 -2.38 -0.02 1.83 16 29 H 0.08 1.67 6.97 -2.39 -0.02 1.65 16 30 H 0.09 1.94 6.75 -2.39 -0.02 1.92 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.03 1.39 6.04 -2.38 -0.01 1.38 16 33 H 0.37 20.58 6.62 -92.71 -0.61 19.97 16 34 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.41 13.34 7.87 -92.70 -0.73 12.61 16 36 H 0.43 10.78 8.30 -92.71 -0.77 10.01 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.11 3.88 6.23 -2.91 -0.02 3.87 16 42 H 0.09 3.27 7.08 -2.38 -0.02 3.25 16 43 H 0.12 2.19 5.89 -2.39 -0.01 2.18 16 44 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.11 2.08 7.31 -2.39 -0.02 2.06 16 Total: -1.00 -73.41 376.23 1.22 -72.19 By element: Atomic # 1 Polarization: 54.04 SS G_CDS: -1.07 Total: 52.98 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.42 Total: 8.97 kcal Atomic # 7 Polarization: -139.33 SS G_CDS: -5.08 Total: -144.41 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.09 Total: -39.47 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Total: -73.41 1.22 -72.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269622099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.418 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds