Wall clock time and date at job start Tue Mar 31 2020 16:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47371 * 2 1 4 4 N 1.46505 * 109.47542 * 300.00607 * 3 2 1 5 5 C 1.36931 * 120.00384 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99831 * 0.02562 * 5 4 3 7 7 C 1.38813 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99871 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00174 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47054 * 89.99644 * 9 7 5 11 11 H 1.48496 * 109.47156 * 209.99833 * 9 7 5 12 12 H 1.48501 * 109.46656 * 329.99800 * 9 7 5 13 13 N 1.46508 * 109.46930 * 240.00646 * 2 1 3 14 14 C 1.34771 * 119.99868 * 184.30285 * 13 2 1 15 15 O 1.21364 * 119.99948 * 5.00590 * 14 13 2 16 16 C 1.49356 * 120.00227 * 185.00363 * 14 13 2 17 17 O 1.21372 * 119.99559 * 0.02562 * 16 14 13 18 18 N 1.34771 * 120.00227 * 180.02562 * 16 14 13 19 19 C 1.39721 * 119.99889 * 175.26871 * 18 16 14 20 20 C 1.38936 * 120.07596 * 214.95933 * 19 18 16 21 21 C 1.38099 * 119.92343 * 179.76795 * 20 19 18 22 22 C 1.38290 * 120.07539 * 0.48292 * 21 20 19 23 23 C 1.38300 * 120.15496 * 359.79257 * 22 21 20 24 24 C 1.38099 * 120.07391 * 359.95174 * 23 22 21 25 25 C 1.52998 * 109.47384 * 120.00369 * 2 1 3 26 26 C 1.52996 * 117.51643 * 348.17933 * 25 2 1 27 27 C 1.52998 * 117.49632 * 56.80762 * 25 2 1 28 28 H 1.08998 * 109.46796 * 299.99879 * 1 2 3 29 29 H 1.09004 * 109.47147 * 59.99624 * 1 2 3 30 30 H 1.08999 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46713 * 59.99905 * 3 2 1 32 32 H 1.08997 * 109.47457 * 180.02562 * 3 2 1 33 33 H 0.97002 * 119.99274 * 359.97438 * 4 3 2 34 34 H 0.96993 * 119.99553 * 180.02562 * 8 7 5 35 35 H 0.96996 * 119.99534 * 4.30234 * 13 2 1 36 36 H 0.96996 * 120.00217 * 355.26952 * 18 16 14 37 37 H 1.07998 * 120.03895 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.96048 * 180.24955 * 21 20 19 39 39 H 1.08002 * 119.92229 * 179.76446 * 22 21 20 40 40 H 1.07994 * 119.96403 * 179.97438 * 23 22 21 41 41 H 1.07990 * 120.03725 * 180.02562 * 24 23 22 42 42 H 1.08998 * 115.54701 * 202.47663 * 25 2 1 43 43 H 1.09003 * 117.49926 * 214.96948 * 26 25 2 44 44 H 1.08995 * 117.50220 * 359.97438 * 26 25 2 45 45 H 1.09000 * 117.49944 * 359.97438 * 27 25 2 46 46 H 1.08999 * 117.49716 * 144.97465 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1333 -1.1961 5 6 1.8821 3.4444 -1.4125 6 1 2.5031 3.9692 -0.7016 7 6 1.4197 4.0986 -2.5461 8 7 1.7369 5.3591 -2.7538 9 14 0.3462 3.1908 -3.7760 10 1 -1.0817 3.3543 -3.4023 11 1 0.5694 3.7483 -5.1342 12 1 0.6975 1.7479 -3.7693 13 7 2.0183 -0.6905 -1.1963 14 6 3.3402 -0.8900 -1.3668 15 8 4.1189 -0.5799 -0.4891 16 6 3.8470 -1.4929 -2.6359 17 8 3.0683 -1.8026 -3.5138 18 7 5.1688 -1.6928 -2.8061 19 6 5.6349 -2.3463 -3.9498 20 6 6.7438 -3.1799 -3.8722 21 6 7.1988 -3.8280 -5.0036 22 6 6.5582 -3.6403 -6.2147 23 6 5.4576 -2.8068 -6.2967 24 6 4.9940 -2.1597 -5.1682 25 6 2.0400 -0.7213 1.2492 26 6 1.0235 -1.0352 2.3487 27 6 1.5750 -2.1617 1.4725 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 1.9563 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 0.9942 1.6617 -1.8347 34 1 1.4135 5.8163 -3.5458 35 1 1.3901 -1.0041 -1.8656 36 1 5.7967 -1.3831 -2.1347 37 1 7.2472 -3.3234 -2.9276 38 1 8.0583 -4.4792 -4.9432 39 1 6.9185 -4.1454 -7.0987 40 1 4.9600 -2.6621 -7.2442 41 1 4.1343 -1.5094 -5.2328 42 1 3.0535 -0.4658 1.5586 43 1 1.3682 -0.9864 3.3816 44 1 -0.0088 -0.7276 2.1825 45 1 0.9054 -2.5953 0.7297 46 1 2.2827 -2.8540 1.9285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269622100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:05 Heat of formation + Delta-G solvation = 14.061021 kcal Electronic energy + Delta-G solvation = -28807.587835 eV Core-core repulsion = 24892.199884 eV Total energy + Delta-G solvation = -3915.387951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14427 -39.97135 -38.56758 -37.53983 -35.40694 -34.96306 -33.55244 -31.48661 -31.08234 -30.00014 -29.72602 -26.64988 -25.32218 -23.70210 -23.03249 -22.48780 -22.06913 -21.25269 -20.43661 -19.04938 -18.80771 -17.83838 -17.51856 -16.68024 -16.18809 -16.12092 -15.75108 -15.19071 -14.74057 -14.66625 -14.46669 -14.11527 -14.03478 -13.86763 -13.52246 -13.30407 -12.93461 -12.85444 -12.57955 -12.28671 -12.11422 -12.05457 -11.61685 -11.53240 -11.37515 -11.20695 -11.12751 -10.93845 -10.79392 -10.55161 -10.31329 -10.18937 -10.07527 -9.59738 -9.42123 -9.09092 -8.94884 -8.88319 -8.36892 -7.22053 -5.76271 -3.11448 0.93470 1.23428 1.61455 2.30610 3.25265 3.35869 3.38064 3.44311 3.47524 3.66550 3.97485 4.42349 4.58526 4.61635 4.72746 4.77623 4.90957 4.98517 5.01854 5.15306 5.22524 5.25115 5.33713 5.40886 5.45462 5.54536 5.60131 5.63561 5.83334 5.84164 5.93586 5.98199 6.08761 6.12522 6.13556 6.26271 6.28300 6.29206 6.35982 6.38378 6.62648 6.78873 6.82111 6.95799 7.40921 7.71572 7.99714 8.08549 8.42255 9.20945 9.93102 10.12657 11.42255 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009253 B = 0.004282 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.203042 B = 6536.881594 C = 8670.523693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.194 3.806 3 C 0.151 3.849 4 N -0.752 5.752 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.879 3.121 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.521 3.479 15 O -0.510 6.510 16 C 0.510 3.490 17 O -0.501 6.501 18 N -0.647 5.647 19 C 0.143 3.857 20 C -0.142 4.142 21 C -0.104 4.104 22 C -0.135 4.135 23 C -0.102 4.102 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.178 4.178 27 C -0.176 4.176 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.359 0.641 34 H 0.259 0.741 35 H 0.408 0.592 36 H 0.423 0.577 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -21.477 1.511 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.109 3.891 3 C 0.024 3.976 4 N -0.398 5.398 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.333 5.333 14 C 0.300 3.700 15 O -0.385 6.385 16 C 0.293 3.707 17 O -0.375 6.375 18 N -0.294 5.294 19 C 0.049 3.951 20 C -0.162 4.162 21 C -0.122 4.122 22 C -0.154 4.154 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.166 4.166 26 C -0.215 4.215 27 C -0.213 4.213 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.192 0.808 34 H 0.069 0.931 35 H 0.244 0.756 36 H 0.262 0.738 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.108 0.892 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.504 -21.188 1.610 21.950 hybrid contribution -0.692 -0.452 -1.062 1.346 sum 4.812 -21.640 0.548 22.176 Atomic orbital electron populations 1.22168 0.93081 1.01924 1.04300 1.20284 0.93932 0.92584 0.82262 1.20992 0.98245 0.87509 0.90904 1.42652 1.62242 1.11190 1.23707 1.19044 1.26516 0.85569 1.05907 0.89194 1.24640 1.00551 0.95790 0.98038 1.69697 1.49810 1.09679 1.29000 0.86622 0.81120 0.79346 0.81928 1.21018 1.21699 1.20365 1.45801 1.06328 1.57260 1.23882 1.19527 0.83868 0.79908 0.86673 1.90726 1.55649 1.49716 1.42393 1.20553 0.82682 0.78978 0.88503 1.90751 1.55780 1.48130 1.42809 1.43127 1.07742 1.56433 1.22110 1.17786 0.95968 0.95144 0.86155 1.20938 0.97915 0.97684 0.99650 1.20928 0.99789 0.99277 0.92253 1.21171 0.96555 0.99798 0.97886 1.21098 0.96248 0.96476 0.98219 1.21402 1.01185 1.00653 0.90680 1.22571 1.00245 0.97491 0.96281 1.23145 0.99414 1.03040 0.95916 1.22840 1.03764 0.91514 1.03188 0.89793 0.91192 0.92241 0.94194 0.93717 0.80815 0.93094 0.75645 0.73845 0.85494 0.85625 0.85970 0.85593 0.84138 0.86216 0.88880 0.88071 0.89154 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 7.05 37.16 0.26 -1.80 16 2 C 0.19 2.92 0.54 -131.82 -0.07 2.85 16 3 C 0.15 2.96 5.03 -4.04 -0.02 2.94 16 4 N -0.75 -17.67 4.98 -59.90 -0.30 -17.96 16 5 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 6 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 9 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 12 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 13 N -0.68 -10.32 4.70 -48.06 -0.23 -10.54 16 14 C 0.52 8.30 7.30 -11.63 -0.08 8.21 16 15 O -0.51 -8.64 13.30 5.48 0.07 -8.57 16 16 C 0.51 7.82 7.73 -11.63 -0.09 7.73 16 17 O -0.50 -8.44 13.92 5.48 0.08 -8.36 16 18 N -0.65 -8.43 5.32 -10.30 -0.05 -8.49 16 19 C 0.14 1.81 6.29 -83.75 -0.53 1.28 16 20 C -0.14 -1.43 9.97 -39.37 -0.39 -1.82 16 21 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 22 C -0.14 -1.26 10.04 -39.54 -0.40 -1.65 16 23 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 24 C -0.12 -1.59 8.70 -39.38 -0.34 -1.94 16 25 C -0.15 -1.93 4.04 -90.62 -0.37 -2.30 16 26 C -0.18 -1.90 9.62 -26.73 -0.26 -2.16 16 27 C -0.18 -1.93 9.81 -26.73 -0.26 -2.20 16 28 H 0.08 1.04 6.82 -51.93 -0.35 0.68 16 29 H 0.07 1.03 6.86 -51.93 -0.36 0.68 16 30 H 0.06 0.64 7.01 -51.93 -0.36 0.27 16 31 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.04 0.97 6.66 -51.93 -0.35 0.62 16 33 H 0.36 8.20 4.21 -40.82 -0.17 8.02 16 34 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 35 H 0.41 5.80 7.96 -40.82 -0.32 5.47 16 36 H 0.42 4.80 8.30 -40.82 -0.34 4.46 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.14 2.14 6.23 -52.49 -0.33 1.81 16 42 H 0.12 1.78 7.15 -51.93 -0.37 1.40 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.01 5.88 -51.93 -0.31 0.71 16 45 H 0.09 0.96 7.40 -51.93 -0.38 0.57 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -33.72 374.33 -8.52 -42.24 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -6.19 Total: 17.92 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.60 Total: -0.63 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: 0.20 Total: -65.83 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.15 Total: -16.93 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.72 -8.52 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269622100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.298 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds