Wall clock time and date at job start Tue Mar 31 2020 16:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47371 * 2 1 4 4 N 1.46505 * 109.47542 * 300.00607 * 3 2 1 5 5 C 1.36931 * 120.00384 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99831 * 0.02562 * 5 4 3 7 7 C 1.38813 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99871 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00174 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47054 * 89.99644 * 9 7 5 11 11 H 1.48496 * 109.47156 * 209.99833 * 9 7 5 12 12 H 1.48501 * 109.46656 * 329.99800 * 9 7 5 13 13 N 1.46508 * 109.46930 * 240.00646 * 2 1 3 14 14 C 1.34771 * 119.99868 * 184.30285 * 13 2 1 15 15 O 1.21364 * 119.99948 * 5.00590 * 14 13 2 16 16 C 1.49356 * 120.00227 * 185.00363 * 14 13 2 17 17 O 1.21372 * 119.99559 * 0.02562 * 16 14 13 18 18 N 1.34771 * 120.00227 * 180.02562 * 16 14 13 19 19 C 1.39721 * 119.99889 * 175.26871 * 18 16 14 20 20 C 1.38936 * 120.07596 * 214.95933 * 19 18 16 21 21 C 1.38099 * 119.92343 * 179.76795 * 20 19 18 22 22 C 1.38290 * 120.07539 * 0.48292 * 21 20 19 23 23 C 1.38300 * 120.15496 * 359.79257 * 22 21 20 24 24 C 1.38099 * 120.07391 * 359.95174 * 23 22 21 25 25 C 1.52998 * 109.47384 * 120.00369 * 2 1 3 26 26 C 1.52996 * 117.51643 * 348.17933 * 25 2 1 27 27 C 1.52998 * 117.49632 * 56.80762 * 25 2 1 28 28 H 1.08998 * 109.46796 * 299.99879 * 1 2 3 29 29 H 1.09004 * 109.47147 * 59.99624 * 1 2 3 30 30 H 1.08999 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46713 * 59.99905 * 3 2 1 32 32 H 1.08997 * 109.47457 * 180.02562 * 3 2 1 33 33 H 0.97002 * 119.99274 * 359.97438 * 4 3 2 34 34 H 0.96993 * 119.99553 * 180.02562 * 8 7 5 35 35 H 0.96996 * 119.99534 * 4.30234 * 13 2 1 36 36 H 0.96996 * 120.00217 * 355.26952 * 18 16 14 37 37 H 1.07998 * 120.03895 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.96048 * 180.24955 * 21 20 19 39 39 H 1.08002 * 119.92229 * 179.76446 * 22 21 20 40 40 H 1.07994 * 119.96403 * 179.97438 * 23 22 21 41 41 H 1.07990 * 120.03725 * 180.02562 * 24 23 22 42 42 H 1.08998 * 115.54701 * 202.47663 * 25 2 1 43 43 H 1.09003 * 117.49926 * 214.96948 * 26 25 2 44 44 H 1.08995 * 117.50220 * 359.97438 * 26 25 2 45 45 H 1.09000 * 117.49944 * 359.97438 * 27 25 2 46 46 H 1.08999 * 117.49716 * 144.97465 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1333 -1.1961 5 6 1.8821 3.4444 -1.4125 6 1 2.5031 3.9692 -0.7016 7 6 1.4197 4.0986 -2.5461 8 7 1.7369 5.3591 -2.7538 9 14 0.3462 3.1908 -3.7760 10 1 -1.0817 3.3543 -3.4023 11 1 0.5694 3.7483 -5.1342 12 1 0.6975 1.7479 -3.7693 13 7 2.0183 -0.6905 -1.1963 14 6 3.3402 -0.8900 -1.3668 15 8 4.1189 -0.5799 -0.4891 16 6 3.8470 -1.4929 -2.6359 17 8 3.0683 -1.8026 -3.5138 18 7 5.1688 -1.6928 -2.8061 19 6 5.6349 -2.3463 -3.9498 20 6 6.7438 -3.1799 -3.8722 21 6 7.1988 -3.8280 -5.0036 22 6 6.5582 -3.6403 -6.2147 23 6 5.4576 -2.8068 -6.2967 24 6 4.9940 -2.1597 -5.1682 25 6 2.0400 -0.7213 1.2492 26 6 1.0235 -1.0352 2.3487 27 6 1.5750 -2.1617 1.4725 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 1.9563 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 0.9942 1.6617 -1.8347 34 1 1.4135 5.8163 -3.5458 35 1 1.3901 -1.0041 -1.8656 36 1 5.7967 -1.3831 -2.1347 37 1 7.2472 -3.3234 -2.9276 38 1 8.0583 -4.4792 -4.9432 39 1 6.9185 -4.1454 -7.0987 40 1 4.9600 -2.6621 -7.2442 41 1 4.1343 -1.5094 -5.2328 42 1 3.0535 -0.4658 1.5586 43 1 1.3682 -0.9864 3.3816 44 1 -0.0088 -0.7276 2.1825 45 1 0.9054 -2.5953 0.7297 46 1 2.2827 -2.8540 1.9285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269622100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:04 Heat of formation + Delta-G solvation = -9.450070 kcal Electronic energy + Delta-G solvation = -28808.607352 eV Core-core repulsion = 24892.199884 eV Total energy + Delta-G solvation = -3916.407468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29392 -41.05891 -39.53560 -38.72037 -36.80530 -36.18120 -35.06298 -33.43110 -31.89214 -31.35901 -30.74038 -28.08587 -26.56751 -25.30534 -23.93419 -23.45709 -22.96847 -22.79395 -21.53436 -20.43805 -19.94170 -19.68121 -18.51720 -17.72530 -17.37361 -17.14941 -16.77085 -16.61761 -16.52732 -15.72862 -15.64529 -15.51107 -15.16167 -14.93321 -14.80699 -14.65158 -14.32932 -13.89984 -13.79525 -13.76130 -13.46013 -13.22229 -13.05432 -12.88392 -12.51879 -12.45935 -12.29527 -12.24572 -12.08033 -11.91859 -11.84764 -11.51051 -11.27453 -11.10218 -11.04047 -10.56569 -10.22395 -9.91307 -9.32841 -9.27205 -8.06500 -5.39444 -0.07201 0.42122 0.56324 1.19271 1.31280 1.35443 1.41636 2.05163 2.40874 2.43123 2.82877 3.01325 3.23858 3.29100 3.40920 3.81110 3.92975 3.95520 3.96024 4.02541 4.16222 4.26646 4.27774 4.44571 4.46122 4.49903 4.54142 4.70517 4.79346 4.85972 4.91615 4.99955 5.03949 5.07169 5.20738 5.21966 5.25817 5.29511 5.33441 5.40860 5.47976 5.57625 5.71450 5.85324 6.02548 6.16524 6.26521 6.61062 6.87205 7.03415 7.77859 7.98799 9.15303 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009253 B = 0.004282 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.203042 B = 6536.881594 C = 8670.523693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.203 3.797 3 C 0.151 3.849 4 N -0.748 5.748 5 C -0.232 4.232 6 H 0.053 0.947 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.297 1.297 12 H -0.258 1.258 13 N -0.678 5.678 14 C 0.516 3.484 15 O -0.525 6.525 16 C 0.507 3.493 17 O -0.522 6.522 18 N -0.637 5.637 19 C 0.116 3.884 20 C -0.140 4.140 21 C -0.100 4.100 22 C -0.130 4.130 23 C -0.111 4.111 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.161 4.161 27 C -0.162 4.162 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.020 0.980 33 H 0.365 0.635 34 H 0.258 0.742 35 H 0.413 0.587 36 H 0.429 0.571 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -24.964 1.266 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.118 3.882 3 C 0.023 3.977 4 N -0.394 5.394 5 C -0.363 4.363 6 H 0.071 0.929 7 C -0.251 4.251 8 N -0.633 5.633 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.224 1.224 12 H -0.183 1.183 13 N -0.330 5.330 14 C 0.296 3.704 15 O -0.402 6.402 16 C 0.289 3.711 17 O -0.397 6.397 18 N -0.284 5.284 19 C 0.023 3.977 20 C -0.159 4.159 21 C -0.118 4.118 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.167 4.167 25 C -0.188 4.188 26 C -0.198 4.198 27 C -0.199 4.199 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.199 0.801 34 H 0.067 0.933 35 H 0.250 0.750 36 H 0.268 0.732 37 H 0.166 0.834 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.156 0.844 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.196 -24.725 1.394 25.303 hybrid contribution -0.421 0.629 -0.937 1.205 sum 4.775 -24.095 0.457 24.568 Atomic orbital electron populations 1.22194 0.91042 1.03947 1.04045 1.20152 0.95281 0.89582 0.83210 1.21068 0.96777 0.90622 0.89182 1.42564 1.62180 1.09589 1.25093 1.19001 1.25023 0.87445 1.04881 0.92879 1.25435 1.02653 0.96655 1.00332 1.69880 1.51818 1.11712 1.29878 0.85511 0.79646 0.78860 0.78430 1.19364 1.22437 1.18280 1.45848 1.06232 1.56807 1.24140 1.19750 0.84120 0.79732 0.86783 1.90717 1.56072 1.50418 1.42949 1.20487 0.83409 0.79128 0.88076 1.90737 1.56385 1.49379 1.43234 1.43075 1.07047 1.55807 1.22432 1.18042 0.97393 0.96675 0.85603 1.21248 0.96754 0.96661 1.01279 1.21392 1.00244 0.98692 0.91461 1.21571 0.95330 0.98594 0.99294 1.21320 0.97093 0.96624 0.97938 1.21344 1.01293 1.01805 0.92258 1.22330 1.00080 0.99735 0.96697 1.23273 0.99201 1.01612 0.95762 1.22909 1.03488 0.90399 1.03082 0.88802 0.92682 0.89067 0.94177 0.96239 0.80091 0.93318 0.75006 0.73178 0.83354 0.82191 0.82918 0.84372 0.86992 0.88452 0.87760 0.86770 0.88190 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 7.05 71.98 0.51 -3.18 16 2 C 0.20 5.92 0.54 3.60 0.00 5.92 16 3 C 0.15 6.00 5.03 86.38 0.43 6.43 16 4 N -0.75 -35.49 4.98 -343.44 -1.71 -37.20 16 5 C -0.23 -13.66 10.47 84.03 0.88 -12.78 16 6 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 7 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 8 N -0.98 -64.26 13.97 21.65 0.30 -63.96 16 9 Si 0.95 46.47 27.74 68.60 1.90 48.37 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 12 H -0.26 -11.65 6.52 99.48 0.65 -11.00 16 13 N -0.68 -20.20 4.70 -424.33 -2.00 -22.20 16 14 C 0.52 16.66 7.30 87.24 0.64 17.30 16 15 O -0.53 -18.28 13.30 -3.29 -0.04 -18.33 16 16 C 0.51 15.86 7.73 87.24 0.67 16.53 16 17 O -0.52 -17.97 13.92 -3.32 -0.05 -18.02 16 18 N -0.64 -16.87 5.32 -304.84 -1.62 -18.49 16 19 C 0.12 2.91 6.29 38.22 0.24 3.15 16 20 C -0.14 -2.55 9.97 22.40 0.22 -2.32 16 21 C -0.10 -1.45 10.04 22.25 0.22 -1.23 16 22 C -0.13 -2.03 10.04 22.30 0.22 -1.81 16 23 C -0.11 -2.32 10.04 22.25 0.22 -2.10 16 24 C -0.15 -4.00 8.70 22.40 0.19 -3.80 16 25 C -0.17 -4.26 4.04 -10.80 -0.04 -4.31 16 26 C -0.16 -2.99 9.62 30.59 0.29 -2.70 16 27 C -0.16 -3.12 9.81 30.59 0.30 -2.82 16 28 H 0.09 2.06 6.82 -2.39 -0.02 2.04 16 29 H 0.05 1.50 6.86 -2.39 -0.02 1.48 16 30 H 0.09 1.61 7.01 -2.39 -0.02 1.59 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.02 0.88 6.66 -2.39 -0.02 0.87 16 33 H 0.37 16.41 4.21 -92.71 -0.39 16.02 16 34 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 35 H 0.41 11.33 7.96 -92.71 -0.74 10.59 16 36 H 0.43 9.91 8.30 -92.71 -0.77 9.14 16 37 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.11 3.63 6.23 -2.92 -0.02 3.61 16 42 H 0.10 2.92 7.15 -2.39 -0.02 2.90 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.11 1.85 5.88 -2.39 -0.01 1.84 16 45 H 0.10 1.77 7.40 -2.39 -0.02 1.75 16 46 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -76.37 374.33 1.36 -75.02 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: -0.91 Total: 45.64 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.48 Total: 9.17 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -5.02 Total: -141.85 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.09 Total: -36.34 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Total: -76.37 1.36 -75.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269622100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.566 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds