Wall clock time and date at job start Tue Mar 31 2020 17:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47404 * 2 1 4 4 N 1.27940 * 119.99752 * 335.00243 * 3 2 1 5 5 Si 1.86794 * 120.00254 * 155.00218 * 3 2 1 6 6 H 1.48504 * 109.47587 * 89.99864 * 5 3 2 7 7 H 1.48505 * 109.47489 * 210.00026 * 5 3 2 8 8 H 1.48506 * 109.47184 * 330.00033 * 5 3 2 9 9 C 1.50705 * 109.46989 * 240.00136 * 2 1 3 10 10 O 1.21280 * 120.00164 * 120.00098 * 9 2 1 11 11 N 1.34779 * 119.99752 * 299.99498 * 9 2 1 12 12 C 1.46498 * 119.99766 * 179.97438 * 11 9 2 13 13 C 1.53785 * 113.61597 * 205.00480 * 12 11 9 14 14 C 1.53777 * 87.07962 * 219.93766 * 13 12 11 15 15 C 1.53007 * 113.61452 * 139.98143 * 14 13 12 16 16 N 1.46490 * 109.47221 * 176.52617 * 15 14 13 17 17 C 1.34781 * 120.00221 * 180.02562 * 16 15 14 18 18 O 1.21777 * 119.99443 * 359.97438 * 17 16 15 19 19 C 1.41516 * 120.00044 * 179.97438 * 17 16 15 20 20 C 1.35622 * 119.99808 * 188.38472 * 19 17 16 21 21 C 1.41677 * 119.99965 * 32.31595 * 20 19 17 22 22 C 1.38276 * 126.25771 * 187.18720 * 21 20 19 23 23 C 1.39790 * 107.07649 * 180.02562 * 22 21 20 24 24 C 1.35504 * 107.90873 * 359.73438 * 23 22 21 25 25 N 1.35755 * 108.90879 * 0.42913 * 24 23 22 26 26 H 0.96997 * 125.68824 * 179.82227 * 25 24 23 27 27 C 1.53778 * 87.17621 * 25.38767 * 14 13 12 28 28 H 1.08995 * 109.47120 * 59.99656 * 1 2 3 29 29 H 1.09006 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46671 * 299.99824 * 1 2 3 31 31 H 1.09002 * 109.47683 * 120.00009 * 2 1 3 32 32 H 0.97000 * 120.00373 * 180.02562 * 4 3 2 33 33 H 0.97002 * 120.00184 * 0.02562 * 11 9 2 34 34 H 1.08996 * 112.85266 * 336.20200 * 12 11 9 35 35 H 1.09001 * 113.61696 * 105.38363 * 13 12 11 36 36 H 1.09006 * 113.61251 * 334.48781 * 13 12 11 37 37 H 1.09001 * 113.61339 * 270.78920 * 14 13 12 38 38 H 1.09005 * 109.46798 * 56.52651 * 15 14 13 39 39 H 1.08998 * 109.46821 * 296.53228 * 15 14 13 40 40 H 0.97008 * 120.00082 * 359.97438 * 16 15 14 41 41 H 1.08001 * 120.00212 * 8.38695 * 19 17 16 42 42 H 1.07999 * 119.99831 * 212.32202 * 20 19 17 43 43 H 1.08005 * 126.46089 * 0.03313 * 22 21 20 44 44 H 1.08003 * 126.04037 * 179.97438 * 23 22 21 45 45 H 1.07997 * 125.54283 * 180.26007 * 24 23 22 46 46 H 1.09006 * 113.60948 * 89.15936 * 27 14 13 47 47 H 1.08992 * 113.61418 * 220.05615 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2988 2.3586 -0.4682 5 14 3.7260 1.8126 0.6836 6 1 4.7327 1.7192 -0.4041 7 1 3.7280 3.1883 1.2430 8 1 4.0639 0.8419 1.7554 9 6 2.0323 -0.7104 -1.2305 10 8 2.7295 -0.1210 -2.0289 11 7 1.7067 -2.0008 -1.4437 12 6 2.1945 -2.6912 -2.6402 13 6 1.3116 -3.8739 -3.0721 14 6 2.6135 -4.6286 -3.3884 15 6 2.5800 -6.1043 -2.9855 16 7 3.8264 -6.7523 -3.4006 17 6 4.0214 -8.0620 -3.1492 18 8 3.1614 -8.7065 -2.5764 19 6 5.2253 -8.6881 -3.5507 20 6 5.3546 -10.0346 -3.4532 21 6 4.2232 -10.8693 -3.6273 22 6 4.1755 -12.2357 -3.4208 23 6 2.8719 -12.6494 -3.7100 24 6 2.1589 -11.5560 -4.0740 25 7 2.9702 -10.4683 -4.0336 26 1 2.7095 -9.5596 -4.2508 27 6 3.3006 -3.7228 -2.3529 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6223 3.2731 -0.4686 33 1 1.1488 -2.4721 -0.8054 34 1 2.4375 -2.0078 -3.4538 35 1 0.7026 -3.6658 -3.9518 36 1 0.7397 -4.3132 -2.2546 37 1 2.9702 -4.4761 -4.4070 38 1 1.7363 -6.5944 -3.4714 39 1 2.4722 -6.1831 -1.9037 40 1 4.5113 -6.2389 -3.8573 41 1 6.0411 -8.0936 -3.9348 42 1 6.3201 -10.4705 -3.2428 43 1 4.9915 -12.8648 -3.0969 44 1 2.4980 -13.6608 -3.6499 45 1 1.1158 -11.5513 -4.3537 46 1 3.2737 -4.1208 -1.3385 47 1 4.2952 -3.3930 -2.6530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280107570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:50 Heat of formation + Delta-G solvation = 49.972015 kcal Electronic energy + Delta-G solvation = -27421.780379 eV Core-core repulsion = 23494.293907 eV Total energy + Delta-G solvation = -3927.486473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19450 -41.45970 -40.56569 -39.65317 -37.05381 -35.87706 -34.66549 -34.51071 -32.70928 -31.75919 -29.98164 -28.38989 -26.91887 -26.43530 -24.96562 -23.68030 -22.07922 -21.87356 -21.25802 -21.19471 -20.59351 -20.05093 -18.96552 -18.23885 -17.67553 -17.65714 -17.44045 -16.72531 -16.29706 -16.16693 -15.76449 -15.39086 -15.13359 -15.05767 -14.97564 -14.74602 -14.72329 -14.50914 -14.13164 -13.77544 -13.67772 -13.43663 -13.34769 -13.19968 -13.13254 -13.08478 -12.94114 -12.85158 -12.38889 -12.32794 -12.20762 -11.88835 -11.59646 -11.57212 -10.99856 -10.71066 -10.66059 -10.15063 -10.06749 -9.86796 -9.64883 -8.42035 -0.44726 0.78751 1.07297 1.36808 1.59928 1.65081 1.72832 1.91818 2.09352 2.17691 2.29698 2.49385 2.63032 3.27383 3.35616 3.37963 3.57448 3.62829 3.77098 3.98012 4.00736 4.08638 4.10473 4.16649 4.29821 4.34272 4.47558 4.51509 4.52090 4.54628 4.57837 4.59733 4.62913 4.72463 4.84812 4.85213 4.87200 4.97911 5.03788 5.10183 5.12321 5.30482 5.39089 5.43486 5.45074 5.46550 6.07625 6.25248 6.41638 6.49752 6.73861 6.86061 7.17375 7.24433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C 0.015 3.985 4 N -0.618 5.618 5 Si 0.932 3.068 6 H -0.234 1.234 7 H -0.246 1.246 8 H -0.236 1.236 9 C 0.528 3.472 10 O -0.531 6.531 11 N -0.719 5.719 12 C 0.123 3.877 13 C -0.135 4.135 14 C -0.123 4.123 15 C 0.132 3.868 16 N -0.729 5.729 17 C 0.545 3.455 18 O -0.554 6.554 19 C -0.306 4.306 20 C 0.062 3.938 21 C -0.006 4.006 22 C -0.136 4.136 23 C -0.217 4.217 24 C 0.027 3.973 25 N -0.511 5.511 26 H 0.417 0.583 27 C -0.147 4.147 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.340 0.660 33 H 0.403 0.597 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.135 0.865 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.088 0.912 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -0.940 0.377 1.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 C -0.235 4.235 4 N -0.231 5.231 5 Si 0.748 3.252 6 H -0.157 1.157 7 H -0.169 1.169 8 H -0.158 1.158 9 C 0.313 3.687 10 O -0.406 6.406 11 N -0.371 5.371 12 C 0.018 3.982 13 C -0.174 4.174 14 C -0.142 4.142 15 C 0.008 3.992 16 N -0.379 5.379 17 C 0.339 3.661 18 O -0.436 6.436 19 C -0.328 4.328 20 C 0.042 3.958 21 C -0.116 4.116 22 C -0.162 4.162 23 C -0.241 4.241 24 C -0.112 4.112 25 N -0.107 5.107 26 H 0.259 0.741 27 C -0.186 4.186 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.157 0.843 33 H 0.238 0.762 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.107 0.893 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.127 -0.463 0.068 0.485 hybrid contribution 0.385 0.841 0.196 0.946 sum 0.259 0.378 0.265 0.529 Atomic orbital electron populations 1.21613 0.90941 1.01924 1.04386 1.20625 0.99272 0.93264 0.97646 1.29674 1.03613 0.95517 0.94730 1.68059 1.37903 1.05506 1.11582 0.85738 0.76261 0.81880 0.81369 1.15652 1.16884 1.15795 1.20352 0.79683 0.81554 0.87078 1.90718 1.37399 1.65887 1.46629 1.45953 1.53883 1.11951 1.25265 1.22520 0.94799 0.92161 0.88679 1.23329 0.96342 0.95241 1.02506 1.22617 0.98165 0.93073 1.00363 1.21300 0.86597 0.91001 1.00287 1.46007 1.20441 1.10698 1.60798 1.17227 0.87038 0.81940 0.79887 1.90878 1.45485 1.63977 1.43303 1.21758 1.00510 0.96202 1.14331 1.20879 0.96783 0.92410 0.85735 1.18244 0.86900 0.93733 1.12750 1.21574 0.98122 0.92849 1.03633 1.20885 0.94465 0.98674 1.10053 1.22165 0.96849 0.86731 1.05415 1.42600 1.08548 1.10138 1.49389 0.74097 1.23615 0.99180 0.96172 0.99650 0.90790 0.92296 0.91164 0.86690 0.84260 0.76201 0.86484 0.90084 0.89030 0.88046 0.91418 0.91213 0.76361 0.84696 0.83501 0.83957 0.84265 0.81722 0.89311 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.21 8.58 37.16 0.32 0.53 16 2 C -0.09 0.08 2.66 -92.92 -0.25 -0.17 16 3 C 0.01 0.01 4.17 -13.90 -0.06 -0.05 16 4 N -0.62 -1.09 12.70 56.23 0.71 -0.37 16 5 Si 0.93 0.13 29.14 -169.99 -4.95 -4.82 16 6 H -0.23 -0.54 7.11 56.52 0.40 -0.14 16 7 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 8 H -0.24 0.11 7.11 56.52 0.40 0.51 16 9 C 0.53 0.48 7.07 -10.98 -0.08 0.40 16 10 O -0.53 -2.60 15.35 5.56 0.09 -2.52 16 11 N -0.72 1.35 5.25 -52.93 -0.28 1.07 16 12 C 0.12 -0.23 4.24 -67.03 -0.28 -0.52 16 13 C -0.14 0.48 7.40 -25.92 -0.19 0.29 16 14 C -0.12 0.43 3.75 -89.81 -0.34 0.09 16 15 C 0.13 -0.25 5.50 -4.04 -0.02 -0.27 16 16 N -0.73 1.10 5.54 -63.25 -0.35 0.75 16 17 C 0.55 0.71 6.32 -15.01 -0.09 0.61 16 18 O -0.55 -2.60 12.73 5.12 0.07 -2.53 16 19 C -0.31 0.04 9.72 -39.27 -0.38 -0.34 16 20 C 0.06 0.03 9.76 -39.21 -0.38 -0.36 16 21 C -0.01 -0.01 5.95 -83.91 -0.50 -0.51 16 22 C -0.14 -0.31 10.86 -38.99 -0.42 -0.74 16 23 C -0.22 -0.48 10.81 -39.98 -0.43 -0.91 16 24 C 0.03 0.05 11.90 -16.79 -0.20 -0.15 16 25 N -0.51 -1.29 4.51 -10.56 -0.05 -1.34 16 26 H 0.42 0.85 6.14 -40.82 -0.25 0.60 16 27 C -0.15 0.39 7.45 -25.83 -0.19 0.19 16 28 H 0.07 0.04 7.79 -51.93 -0.40 -0.36 16 29 H 0.06 -0.21 7.56 -51.93 -0.39 -0.61 16 30 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 31 H 0.12 -0.44 7.85 -51.93 -0.41 -0.85 16 32 H 0.34 0.12 8.23 -40.82 -0.34 -0.22 16 33 H 0.40 -1.80 8.15 -40.82 -0.33 -2.13 16 34 H 0.12 0.00 7.46 -51.93 -0.39 -0.39 16 35 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 36 H 0.09 -0.39 8.08 -51.93 -0.42 -0.81 16 37 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 39 H 0.07 -0.05 7.87 -51.93 -0.41 -0.46 16 40 H 0.40 -1.45 8.43 -40.82 -0.34 -1.79 16 41 H 0.14 -0.36 8.06 -52.49 -0.42 -0.78 16 42 H 0.15 -0.36 8.06 -52.49 -0.42 -0.78 16 43 H 0.14 0.02 8.06 -52.48 -0.42 -0.40 16 44 H 0.14 0.07 8.06 -52.48 -0.42 -0.35 16 45 H 0.17 -0.16 8.06 -52.49 -0.42 -0.58 16 46 H 0.09 -0.22 7.92 -51.93 -0.41 -0.63 16 47 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 LS Contribution 389.14 15.07 5.86 5.86 Total: 0.00 -9.23 389.14 -9.52 -18.76 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: -7.12 Total: -12.97 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.50 Total: -1.90 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: 0.04 Total: 0.11 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.15 Total: -5.05 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: -4.95 Total: -4.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -9.23 -9.52 -18.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280107570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.729 kcal (2) G-P(sol) polarization free energy of solvation -9.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds