Wall clock time and date at job start Tue Mar 31 2020 17:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47404 * 2 1 4 4 N 1.27940 * 119.99752 * 335.00243 * 3 2 1 5 5 Si 1.86794 * 120.00254 * 155.00218 * 3 2 1 6 6 H 1.48504 * 109.47587 * 89.99864 * 5 3 2 7 7 H 1.48505 * 109.47489 * 210.00026 * 5 3 2 8 8 H 1.48506 * 109.47184 * 330.00033 * 5 3 2 9 9 C 1.50705 * 109.46989 * 240.00136 * 2 1 3 10 10 O 1.21280 * 120.00164 * 120.00098 * 9 2 1 11 11 N 1.34779 * 119.99752 * 299.99498 * 9 2 1 12 12 C 1.46498 * 119.99766 * 179.97438 * 11 9 2 13 13 C 1.53785 * 113.61597 * 205.00480 * 12 11 9 14 14 C 1.53777 * 87.07962 * 219.93766 * 13 12 11 15 15 C 1.53007 * 113.61452 * 139.98143 * 14 13 12 16 16 N 1.46490 * 109.47221 * 176.52617 * 15 14 13 17 17 C 1.34781 * 120.00221 * 180.02562 * 16 15 14 18 18 O 1.21777 * 119.99443 * 359.97438 * 17 16 15 19 19 C 1.41516 * 120.00044 * 179.97438 * 17 16 15 20 20 C 1.35622 * 119.99808 * 188.38472 * 19 17 16 21 21 C 1.41677 * 119.99965 * 32.31595 * 20 19 17 22 22 C 1.38276 * 126.25771 * 187.18720 * 21 20 19 23 23 C 1.39790 * 107.07649 * 180.02562 * 22 21 20 24 24 C 1.35504 * 107.90873 * 359.73438 * 23 22 21 25 25 N 1.35755 * 108.90879 * 0.42913 * 24 23 22 26 26 H 0.96997 * 125.68824 * 179.82227 * 25 24 23 27 27 C 1.53778 * 87.17621 * 25.38767 * 14 13 12 28 28 H 1.08995 * 109.47120 * 59.99656 * 1 2 3 29 29 H 1.09006 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46671 * 299.99824 * 1 2 3 31 31 H 1.09002 * 109.47683 * 120.00009 * 2 1 3 32 32 H 0.97000 * 120.00373 * 180.02562 * 4 3 2 33 33 H 0.97002 * 120.00184 * 0.02562 * 11 9 2 34 34 H 1.08996 * 112.85266 * 336.20200 * 12 11 9 35 35 H 1.09001 * 113.61696 * 105.38363 * 13 12 11 36 36 H 1.09006 * 113.61251 * 334.48781 * 13 12 11 37 37 H 1.09001 * 113.61339 * 270.78920 * 14 13 12 38 38 H 1.09005 * 109.46798 * 56.52651 * 15 14 13 39 39 H 1.08998 * 109.46821 * 296.53228 * 15 14 13 40 40 H 0.97008 * 120.00082 * 359.97438 * 16 15 14 41 41 H 1.08001 * 120.00212 * 8.38695 * 19 17 16 42 42 H 1.07999 * 119.99831 * 212.32202 * 20 19 17 43 43 H 1.08005 * 126.46089 * 0.03313 * 22 21 20 44 44 H 1.08003 * 126.04037 * 179.97438 * 23 22 21 45 45 H 1.07997 * 125.54283 * 180.26007 * 24 23 22 46 46 H 1.09006 * 113.60948 * 89.15936 * 27 14 13 47 47 H 1.08992 * 113.61418 * 220.05615 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2988 2.3586 -0.4682 5 14 3.7260 1.8126 0.6836 6 1 4.7327 1.7192 -0.4041 7 1 3.7280 3.1883 1.2430 8 1 4.0639 0.8419 1.7554 9 6 2.0323 -0.7104 -1.2305 10 8 2.7295 -0.1210 -2.0289 11 7 1.7067 -2.0008 -1.4437 12 6 2.1945 -2.6912 -2.6402 13 6 1.3116 -3.8739 -3.0721 14 6 2.6135 -4.6286 -3.3884 15 6 2.5800 -6.1043 -2.9855 16 7 3.8264 -6.7523 -3.4006 17 6 4.0214 -8.0620 -3.1492 18 8 3.1614 -8.7065 -2.5764 19 6 5.2253 -8.6881 -3.5507 20 6 5.3546 -10.0346 -3.4532 21 6 4.2232 -10.8693 -3.6273 22 6 4.1755 -12.2357 -3.4208 23 6 2.8719 -12.6494 -3.7100 24 6 2.1589 -11.5560 -4.0740 25 7 2.9702 -10.4683 -4.0336 26 1 2.7095 -9.5596 -4.2508 27 6 3.3006 -3.7228 -2.3529 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6223 3.2731 -0.4686 33 1 1.1488 -2.4721 -0.8054 34 1 2.4375 -2.0078 -3.4538 35 1 0.7026 -3.6658 -3.9518 36 1 0.7397 -4.3132 -2.2546 37 1 2.9702 -4.4761 -4.4070 38 1 1.7363 -6.5944 -3.4714 39 1 2.4722 -6.1831 -1.9037 40 1 4.5113 -6.2389 -3.8573 41 1 6.0411 -8.0936 -3.9348 42 1 6.3201 -10.4705 -3.2428 43 1 4.9915 -12.8648 -3.0969 44 1 2.4980 -13.6608 -3.6499 45 1 1.1158 -11.5513 -4.3537 46 1 3.2737 -4.1208 -1.3385 47 1 4.2952 -3.3930 -2.6530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280107570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:50 Heat of formation + Delta-G solvation = 50.358901 kcal Electronic energy + Delta-G solvation = -27421.763603 eV Core-core repulsion = 23494.293907 eV Total energy + Delta-G solvation = -3927.469696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.25447 -41.41434 -40.61138 -39.60555 -37.08716 -35.87582 -34.69332 -34.51149 -32.65827 -31.85383 -29.97366 -28.36209 -26.71125 -26.35829 -24.93568 -23.65075 -22.05712 -21.90639 -21.27458 -21.17966 -20.61929 -19.99367 -18.96148 -18.21751 -17.67654 -17.64610 -17.42738 -16.64866 -16.23166 -16.14768 -15.77339 -15.41337 -15.14218 -15.07015 -14.98387 -14.75956 -14.73534 -14.50657 -14.15704 -13.77851 -13.44472 -13.36197 -13.28589 -13.16558 -13.09460 -13.04587 -12.93932 -12.88473 -12.27385 -12.21185 -12.18358 -11.73598 -11.67934 -11.42409 -11.08446 -10.75823 -10.70467 -10.13178 -10.02089 -9.89951 -9.75041 -8.47674 -0.45419 0.74701 1.05054 1.35515 1.57126 1.61498 1.64169 1.89090 2.00571 2.25116 2.36633 2.44505 2.60287 3.39561 3.45939 3.56023 3.75612 3.79843 3.88662 4.09891 4.12974 4.13810 4.24108 4.28451 4.33111 4.43062 4.46194 4.51628 4.65502 4.66456 4.71784 4.75805 4.82434 4.84621 4.98222 5.01196 5.04644 5.05784 5.07621 5.12003 5.26767 5.37917 5.40078 5.41406 5.47809 5.59860 6.00861 6.16916 6.52452 6.57423 6.65967 6.84706 7.21806 7.24764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C 0.009 3.991 4 N -0.641 5.641 5 Si 0.961 3.039 6 H -0.271 1.271 7 H -0.250 1.250 8 H -0.217 1.217 9 C 0.524 3.476 10 O -0.579 6.579 11 N -0.705 5.705 12 C 0.116 3.884 13 C -0.125 4.125 14 C -0.110 4.110 15 C 0.135 3.865 16 N -0.716 5.716 17 C 0.538 3.462 18 O -0.592 6.592 19 C -0.302 4.302 20 C 0.050 3.950 21 C -0.022 4.022 22 C -0.156 4.156 23 C -0.234 4.234 24 C 0.012 3.988 25 N -0.516 5.516 26 H 0.416 0.584 27 C -0.142 4.142 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.343 0.657 33 H 0.418 0.582 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.414 0.586 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.186 0.814 46 H 0.091 0.909 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -1.488 1.083 1.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.111 4.111 3 C -0.240 4.240 4 N -0.254 5.254 5 Si 0.778 3.222 6 H -0.196 1.196 7 H -0.173 1.173 8 H -0.138 1.138 9 C 0.311 3.689 10 O -0.458 6.458 11 N -0.357 5.357 12 C 0.010 3.990 13 C -0.164 4.164 14 C -0.129 4.129 15 C 0.011 3.989 16 N -0.367 5.367 17 C 0.332 3.668 18 O -0.478 6.478 19 C -0.323 4.323 20 C 0.030 3.970 21 C -0.133 4.133 22 C -0.181 4.181 23 C -0.258 4.258 24 C -0.126 4.126 25 N -0.112 5.112 26 H 0.258 0.742 27 C -0.181 4.181 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.250 0.750 41 H 0.180 0.820 42 H 0.191 0.809 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.203 0.797 46 H 0.110 0.890 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.087 -1.019 0.792 1.293 hybrid contribution 0.378 1.052 -0.054 1.120 sum 0.291 0.033 0.738 0.794 Atomic orbital electron populations 1.21583 0.90289 1.03203 1.03310 1.20800 0.99781 0.92384 0.98134 1.29998 1.03824 0.96243 0.93927 1.68104 1.38771 1.06045 1.12450 0.85333 0.74598 0.82039 0.80261 1.19630 1.17330 1.13809 1.20701 0.79044 0.82112 0.87081 1.90701 1.39771 1.67062 1.48308 1.45876 1.53220 1.11206 1.25380 1.22511 0.96014 0.92189 0.88237 1.23299 0.96172 0.93971 1.02957 1.22518 0.98131 0.91769 1.00470 1.21272 0.86263 0.91690 0.99631 1.45944 1.20794 1.10056 1.59861 1.17536 0.87069 0.82559 0.79622 1.90861 1.46756 1.64937 1.45208 1.22018 1.00612 0.96362 1.13350 1.21245 0.97273 0.92651 0.85868 1.18706 0.87508 0.94338 1.12766 1.21896 0.98774 0.93265 1.04210 1.21176 0.94806 0.99412 1.10390 1.22596 0.97892 0.86611 1.05527 1.42683 1.08812 1.10214 1.49471 0.74161 1.23570 0.98623 0.95879 1.00029 0.93316 0.89835 0.90744 0.83201 0.83983 0.74441 0.88650 0.89861 0.87811 0.87263 0.91895 0.92169 0.74971 0.81986 0.80915 0.82490 0.83208 0.79698 0.89015 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.50 8.58 71.98 0.62 1.11 16 2 C -0.09 0.22 2.66 -12.29 -0.03 0.18 16 3 C 0.01 0.02 4.17 88.68 0.37 0.39 16 4 N -0.64 -2.92 12.70 24.11 0.31 -2.61 16 5 Si 0.96 0.60 29.14 68.60 2.00 2.60 16 6 H -0.27 -1.83 7.11 99.48 0.71 -1.13 16 7 H -0.25 -0.25 7.11 99.48 0.71 0.46 16 8 H -0.22 0.53 7.11 99.48 0.71 1.24 16 9 C 0.52 1.06 7.07 87.66 0.62 1.68 16 10 O -0.58 -6.56 15.35 -3.03 -0.05 -6.60 16 11 N -0.71 3.02 5.25 -439.76 -2.31 0.71 16 12 C 0.12 -0.44 4.24 45.58 0.19 -0.25 16 13 C -0.13 1.00 7.40 31.12 0.23 1.23 16 14 C -0.11 0.85 3.75 -10.27 -0.04 0.81 16 15 C 0.14 -0.58 5.50 86.38 0.47 -0.11 16 16 N -0.72 2.64 5.54 -472.22 -2.62 0.02 16 17 C 0.54 1.27 6.32 85.05 0.54 1.81 16 18 O -0.59 -5.89 12.73 -4.60 -0.06 -5.95 16 19 C -0.30 0.33 9.72 22.47 0.22 0.55 16 20 C 0.05 0.02 9.76 22.51 0.22 0.24 16 21 C -0.02 -0.13 5.95 39.08 0.23 0.11 16 22 C -0.16 -0.82 10.86 22.65 0.25 -0.57 16 23 C -0.23 -1.22 10.81 22.01 0.24 -0.99 16 24 C 0.01 0.05 11.90 83.45 0.99 1.05 16 25 N -0.52 -3.03 4.51 -187.34 -0.84 -3.87 16 26 H 0.42 2.08 6.14 -92.71 -0.57 1.51 16 27 C -0.14 0.81 7.45 31.18 0.23 1.04 16 28 H 0.05 0.08 7.79 -2.39 -0.02 0.07 16 29 H 0.08 -0.77 7.56 -2.38 -0.02 -0.78 16 30 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.15 -1.47 7.85 -2.39 -0.02 -1.49 16 32 H 0.34 0.71 8.23 -92.71 -0.76 -0.05 16 33 H 0.42 -4.38 8.15 -92.71 -0.76 -5.13 16 34 H 0.10 0.12 7.46 -2.39 -0.02 0.10 16 35 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.10 -1.04 8.08 -2.38 -0.02 -1.06 16 37 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.06 -0.10 7.87 -2.39 -0.02 -0.12 16 40 H 0.41 -3.48 8.43 -92.70 -0.78 -4.26 16 41 H 0.16 -1.18 8.06 -2.91 -0.02 -1.20 16 42 H 0.17 -1.03 8.06 -2.91 -0.02 -1.05 16 43 H 0.16 0.11 8.06 -2.91 -0.02 0.08 16 44 H 0.15 0.26 8.06 -2.91 -0.02 0.23 16 45 H 0.19 -0.26 8.06 -2.91 -0.02 -0.29 16 46 H 0.09 -0.54 7.92 -2.38 -0.02 -0.56 16 47 H 0.07 -0.28 8.14 -2.39 -0.02 -0.29 16 Total: 0.00 -24.01 389.14 0.68 -23.32 By element: Atomic # 1 Polarization: -14.81 SS G_CDS: -1.09 Total: -15.91 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.35 Total: 8.29 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -5.47 Total: -5.76 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.11 Total: -12.55 kcal Atomic # 14 Polarization: 0.60 SS G_CDS: 2.00 Total: 2.60 kcal Total: -24.01 0.68 -23.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280107570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.682 kcal (2) G-P(sol) polarization free energy of solvation -24.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds