Wall clock time and date at job start Tue Mar 31 2020 17:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47178 * 2 1 4 4 N 1.27942 * 119.99844 * 265.00378 * 3 2 1 5 5 Si 1.86799 * 119.99997 * 85.00083 * 3 2 1 6 6 H 1.48505 * 109.46855 * 90.00013 * 5 3 2 7 7 H 1.48493 * 109.47278 * 209.99687 * 5 3 2 8 8 H 1.48502 * 109.47369 * 330.00233 * 5 3 2 9 9 C 1.50701 * 109.46763 * 240.00460 * 2 1 3 10 10 O 1.21285 * 120.00196 * 114.93124 * 9 2 1 11 11 N 1.34777 * 119.99868 * 294.92647 * 9 2 1 12 12 C 1.46925 * 120.63186 * 175.39608 * 11 9 2 13 13 C 1.53194 * 108.77681 * 126.41470 * 12 11 9 14 14 C 1.53039 * 109.31279 * 54.63182 * 13 12 11 15 15 C 1.53066 * 109.66118 * 298.70413 * 14 13 12 16 16 H 1.09002 * 109.39211 * 301.27460 * 15 14 13 17 17 N 1.46498 * 109.62372 * 181.16877 * 15 14 13 18 18 C 1.34777 * 120.00053 * 85.10616 * 17 15 14 19 19 O 1.21779 * 120.00051 * 359.97438 * 18 17 15 20 20 C 1.41515 * 120.00167 * 180.02562 * 18 17 15 21 21 C 1.35616 * 120.00295 * 188.48830 * 20 18 17 22 22 C 1.41675 * 120.00052 * 32.56621 * 21 20 18 23 23 C 1.38276 * 126.26034 * 186.17102 * 22 21 20 24 24 C 1.39793 * 107.07598 * 179.88146 * 23 22 21 25 25 C 1.35498 * 107.91017 * 0.38939 * 24 23 22 26 26 N 1.35749 * 108.90900 * 359.75342 * 25 24 23 27 27 H 0.97000 * 125.69053 * 179.97438 * 26 25 24 28 28 C 1.46926 * 120.63050 * 355.41551 * 11 9 2 29 29 H 1.09000 * 109.47051 * 65.31352 * 1 2 3 30 30 H 1.08998 * 109.47047 * 185.32067 * 1 2 3 31 31 H 1.09001 * 109.46712 * 305.32012 * 1 2 3 32 32 H 1.08999 * 109.47363 * 120.00381 * 2 1 3 33 33 H 0.97010 * 119.99588 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.58800 * 246.19989 * 12 11 9 35 35 H 1.09006 * 109.58711 * 6.62360 * 12 11 9 36 36 H 1.08993 * 109.49744 * 174.58912 * 13 12 11 37 37 H 1.09000 * 109.49591 * 294.68163 * 13 12 11 38 38 H 1.09006 * 109.45602 * 58.65671 * 14 13 12 39 39 H 1.08995 * 109.45942 * 178.62739 * 14 13 12 40 40 H 0.96995 * 120.00228 * 265.10315 * 17 15 14 41 41 H 1.08003 * 120.00124 * 8.48839 * 20 18 17 42 42 H 1.08005 * 120.00079 * 212.57400 * 21 20 18 43 43 H 1.08001 * 126.46263 * 0.02637 * 23 22 21 44 44 H 1.07999 * 126.04147 * 180.17997 * 24 23 22 45 45 H 1.08001 * 125.54099 * 179.76457 * 25 24 23 46 46 H 1.08996 * 109.58883 * 353.37720 * 28 11 9 47 47 H 1.08999 * 109.58423 * 113.65823 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9917 -1.1038 5 14 2.2108 2.3484 1.6116 6 1 3.5731 2.1292 2.1606 7 1 2.0005 3.7990 1.3737 8 1 1.2008 1.8543 2.5816 9 6 2.0323 -0.7103 -1.2306 10 8 2.6518 -0.0975 -2.0741 11 7 1.7930 -2.0266 -1.3936 12 6 2.1875 -2.7114 -2.6323 13 6 3.0458 -3.9279 -2.2713 14 6 2.2822 -4.8102 -1.2811 15 6 1.9996 -4.0214 -0.0002 16 1 2.9417 -3.6879 0.4348 17 7 1.2932 -4.8754 0.9578 18 6 1.9890 -5.6925 1.7730 19 8 3.2050 -5.7213 1.7129 20 6 1.3066 -6.5179 2.6981 21 6 2.0043 -7.2095 3.6330 22 6 3.1992 -6.6689 4.1688 23 6 4.0708 -7.3074 5.0318 24 6 5.1109 -6.4129 5.3009 25 6 4.8610 -5.2670 4.6224 26 7 3.7019 -5.4094 3.9302 27 1 3.2954 -4.7361 3.3625 28 6 1.1325 -2.8040 -0.3363 29 1 -0.3633 0.4292 -0.9337 30 1 -0.3633 -1.0232 0.0953 31 1 -0.3633 0.5942 0.8385 32 1 1.8934 -0.5139 0.8899 33 1 2.6603 2.9062 -1.1037 34 1 1.2967 -3.0388 -3.1683 35 1 2.7638 -2.0304 -3.2587 36 1 3.2650 -4.4989 -3.1734 37 1 3.9781 -3.5933 -1.8165 38 1 1.3386 -5.1243 -1.7274 39 1 2.8807 -5.6890 -1.0414 40 1 0.3246 -4.8527 1.0055 41 1 0.2302 -6.5970 2.6595 42 1 1.6491 -8.1725 3.9690 43 1 3.9686 -8.3091 5.4223 44 1 5.9613 -6.6008 5.9395 45 1 5.4829 -4.3841 4.6308 46 1 1.0126 -2.1843 0.5523 47 1 0.1546 -3.1369 -0.6842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284871359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:54 Heat of formation + Delta-G solvation = 52.119539 kcal Electronic energy + Delta-G solvation = -29336.853017 eV Core-core repulsion = 25409.459668 eV Total energy + Delta-G solvation = -3927.393349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.27279 -41.55720 -40.55399 -38.65307 -36.77476 -35.53102 -34.71724 -34.33466 -32.55167 -31.79299 -31.16938 -29.00887 -27.04470 -25.70334 -25.33379 -23.83266 -22.61492 -21.77165 -21.25353 -21.21559 -20.71137 -19.63430 -19.03982 -18.78695 -17.63881 -17.29553 -16.74309 -16.55091 -16.09051 -16.01868 -15.69363 -15.35925 -15.15969 -15.03987 -14.97599 -14.84211 -14.72804 -14.36167 -14.25792 -14.07337 -13.82745 -13.65086 -13.59884 -13.20079 -13.15321 -12.89113 -12.84853 -12.59417 -12.48795 -12.36026 -12.25539 -11.99506 -11.84801 -11.38080 -11.04585 -10.75360 -10.70755 -10.24182 -9.69732 -9.61214 -9.51403 -8.45576 -0.49258 0.84802 0.98629 1.30870 1.60309 1.68776 1.73308 1.78854 1.86158 2.04998 2.32810 2.46074 2.60041 3.27186 3.44402 3.53279 3.67002 3.89804 3.91098 3.96417 4.01476 4.04910 4.05646 4.10696 4.25853 4.30854 4.42418 4.45909 4.48509 4.49106 4.56402 4.59271 4.61171 4.75286 4.83758 4.88239 4.92865 4.99933 5.06598 5.07303 5.11947 5.19064 5.33354 5.40419 5.42000 5.51845 6.04289 6.22002 6.34840 6.44029 6.70623 6.97570 7.18448 7.34466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.019 4.019 4 N -0.572 5.572 5 Si 0.931 3.069 6 H -0.240 1.240 7 H -0.244 1.244 8 H -0.233 1.233 9 C 0.520 3.480 10 O -0.490 6.490 11 N -0.615 5.615 12 C 0.110 3.890 13 C -0.131 4.131 14 C -0.129 4.129 15 C 0.130 3.870 16 H 0.092 0.908 17 N -0.726 5.726 18 C 0.550 3.450 19 O -0.549 6.549 20 C -0.308 4.308 21 C 0.065 3.935 22 C -0.006 4.006 23 C -0.135 4.135 24 C -0.217 4.217 25 C 0.028 3.972 26 N -0.511 5.511 27 H 0.416 0.584 28 C 0.100 3.900 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.332 0.668 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.402 0.598 41 H 0.136 0.864 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.094 0.906 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 -1.236 4.123 6.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.269 4.269 4 N -0.184 5.184 5 Si 0.746 3.254 6 H -0.163 1.163 7 H -0.167 1.167 8 H -0.155 1.155 9 C 0.306 3.694 10 O -0.360 6.360 11 N -0.352 5.352 12 C -0.012 4.012 13 C -0.170 4.170 14 C -0.168 4.168 15 C 0.025 3.975 16 H 0.110 0.890 17 N -0.377 5.377 18 C 0.344 3.656 19 O -0.431 6.431 20 C -0.330 4.330 21 C 0.045 3.955 22 C -0.117 4.117 23 C -0.160 4.160 24 C -0.241 4.241 25 C -0.111 4.111 26 N -0.107 5.107 27 H 0.259 0.741 28 C -0.025 4.025 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.236 0.764 41 H 0.154 0.846 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.112 0.888 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.320 -0.564 3.200 5.405 hybrid contribution -0.523 0.509 0.005 0.730 sum -4.843 -0.056 3.205 5.808 Atomic orbital electron populations 1.21827 0.91104 1.03346 1.03906 1.20622 0.98360 0.93387 0.97936 1.29821 0.96041 0.98630 1.02406 1.68452 1.04986 1.14206 1.30763 0.85755 0.82958 0.80121 0.76592 1.16326 1.16688 1.15469 1.20373 0.79792 0.80968 0.88276 1.90799 1.37704 1.64235 1.43303 1.48015 1.61299 1.08366 1.17492 1.21634 0.99114 0.94262 0.86148 1.21881 0.99104 0.96188 0.99848 1.21915 1.01108 0.98998 0.94766 1.21279 0.96685 0.89862 0.89721 0.89008 1.45957 1.10471 1.42327 1.38935 1.17208 0.87471 0.79194 0.81749 1.90890 1.13478 1.67126 1.71603 1.21722 1.00723 1.07755 1.02797 1.20887 0.89317 0.95204 0.90117 1.18239 0.99874 0.87691 1.05892 1.21583 0.94687 0.99581 1.00199 1.20890 1.01977 0.94433 1.06751 1.22168 0.89644 1.00991 0.98253 1.42612 1.18885 1.13313 1.35911 0.74097 1.21985 0.95755 0.92876 0.91853 0.91250 0.91002 0.90807 0.87453 0.85038 0.91390 0.88588 0.90152 0.91229 0.91474 0.90891 0.76376 0.84609 0.83482 0.83954 0.84275 0.81734 0.88780 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.42 8.78 37.16 0.33 0.74 16 2 C -0.08 0.08 1.81 -92.92 -0.17 -0.09 16 3 C -0.02 -0.01 4.78 -13.90 -0.07 -0.07 16 4 N -0.57 -1.67 11.16 56.23 0.63 -1.04 16 5 Si 0.93 -1.35 29.20 -169.99 -4.96 -6.31 16 6 H -0.24 0.09 7.11 56.52 0.40 0.49 16 7 H -0.24 0.12 7.11 56.52 0.40 0.52 16 8 H -0.23 0.51 7.11 56.52 0.40 0.91 16 9 C 0.52 1.04 6.97 -10.98 -0.08 0.96 16 10 O -0.49 -3.09 13.68 5.55 0.08 -3.01 16 11 N -0.62 0.22 2.97 -172.77 -0.51 -0.30 16 12 C 0.11 -0.01 6.44 -3.71 -0.02 -0.03 16 13 C -0.13 0.08 6.08 -26.61 -0.16 -0.09 16 14 C -0.13 0.12 5.46 -26.68 -0.15 -0.03 16 15 C 0.13 -0.25 2.61 -67.80 -0.18 -0.42 16 16 H 0.09 0.02 7.58 -51.93 -0.39 -0.37 16 17 N -0.73 2.02 5.07 -56.60 -0.29 1.73 16 18 C 0.55 0.06 6.28 -15.01 -0.09 -0.04 16 19 O -0.55 -2.03 12.39 5.12 0.06 -1.97 16 20 C -0.31 0.39 9.72 -39.27 -0.38 0.01 16 21 C 0.07 -0.03 9.76 -39.21 -0.38 -0.41 16 22 C -0.01 -0.01 5.96 -83.91 -0.50 -0.51 16 23 C -0.13 -0.24 10.86 -38.99 -0.42 -0.66 16 24 C -0.22 -0.39 10.81 -39.98 -0.43 -0.82 16 25 C 0.03 0.04 11.90 -16.80 -0.20 -0.16 16 26 N -0.51 -0.91 4.52 -10.57 -0.05 -0.96 16 27 H 0.42 0.47 6.09 -40.82 -0.25 0.22 16 28 C 0.10 -0.33 4.46 -3.71 -0.02 -0.35 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.07 -0.34 5.80 -51.93 -0.30 -0.64 16 31 H 0.07 -0.31 7.82 -51.93 -0.41 -0.71 16 32 H 0.11 -0.39 6.92 -51.93 -0.36 -0.75 16 33 H 0.33 0.39 8.23 -40.82 -0.34 0.05 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 35 H 0.10 0.19 7.00 -51.93 -0.36 -0.17 16 36 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 37 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 38 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 39 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.40 -2.18 8.56 -40.82 -0.35 -2.53 16 41 H 0.14 -0.53 8.06 -52.48 -0.42 -0.95 16 42 H 0.15 -0.47 8.06 -52.48 -0.42 -0.89 16 43 H 0.14 -0.04 8.06 -52.49 -0.42 -0.47 16 44 H 0.14 0.04 8.06 -52.49 -0.42 -0.39 16 45 H 0.17 -0.21 8.06 -52.49 -0.42 -0.63 16 46 H 0.09 -0.46 4.88 -51.93 -0.25 -0.71 16 47 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 LS Contribution 373.18 15.07 5.62 5.62 Total: 0.00 -9.52 373.18 -9.23 -18.74 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: -6.88 Total: -10.53 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.92 Total: -1.98 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -0.22 Total: -0.56 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.14 Total: -4.98 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -4.96 Total: -6.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -9.52 -9.23 -18.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284871359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.861 kcal (2) G-P(sol) polarization free energy of solvation -9.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds