Wall clock time and date at job start Tue Mar 31 2020 17:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47178 * 2 1 4 4 N 1.27942 * 119.99844 * 265.00378 * 3 2 1 5 5 Si 1.86799 * 119.99997 * 85.00083 * 3 2 1 6 6 H 1.48505 * 109.46855 * 90.00013 * 5 3 2 7 7 H 1.48493 * 109.47278 * 209.99687 * 5 3 2 8 8 H 1.48502 * 109.47369 * 330.00233 * 5 3 2 9 9 C 1.50701 * 109.46763 * 240.00460 * 2 1 3 10 10 O 1.21285 * 120.00196 * 114.93124 * 9 2 1 11 11 N 1.34777 * 119.99868 * 294.92647 * 9 2 1 12 12 C 1.46925 * 120.63186 * 175.39608 * 11 9 2 13 13 C 1.53194 * 108.77681 * 126.41470 * 12 11 9 14 14 C 1.53039 * 109.31279 * 54.63182 * 13 12 11 15 15 C 1.53066 * 109.66118 * 298.70413 * 14 13 12 16 16 H 1.09002 * 109.39211 * 301.27460 * 15 14 13 17 17 N 1.46498 * 109.62372 * 181.16877 * 15 14 13 18 18 C 1.34777 * 120.00053 * 85.10616 * 17 15 14 19 19 O 1.21779 * 120.00051 * 359.97438 * 18 17 15 20 20 C 1.41515 * 120.00167 * 180.02562 * 18 17 15 21 21 C 1.35616 * 120.00295 * 188.48830 * 20 18 17 22 22 C 1.41675 * 120.00052 * 32.56621 * 21 20 18 23 23 C 1.38276 * 126.26034 * 186.17102 * 22 21 20 24 24 C 1.39793 * 107.07598 * 179.88146 * 23 22 21 25 25 C 1.35498 * 107.91017 * 0.38939 * 24 23 22 26 26 N 1.35749 * 108.90900 * 359.75342 * 25 24 23 27 27 H 0.97000 * 125.69053 * 179.97438 * 26 25 24 28 28 C 1.46926 * 120.63050 * 355.41551 * 11 9 2 29 29 H 1.09000 * 109.47051 * 65.31352 * 1 2 3 30 30 H 1.08998 * 109.47047 * 185.32067 * 1 2 3 31 31 H 1.09001 * 109.46712 * 305.32012 * 1 2 3 32 32 H 1.08999 * 109.47363 * 120.00381 * 2 1 3 33 33 H 0.97010 * 119.99588 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.58800 * 246.19989 * 12 11 9 35 35 H 1.09006 * 109.58711 * 6.62360 * 12 11 9 36 36 H 1.08993 * 109.49744 * 174.58912 * 13 12 11 37 37 H 1.09000 * 109.49591 * 294.68163 * 13 12 11 38 38 H 1.09006 * 109.45602 * 58.65671 * 14 13 12 39 39 H 1.08995 * 109.45942 * 178.62739 * 14 13 12 40 40 H 0.96995 * 120.00228 * 265.10315 * 17 15 14 41 41 H 1.08003 * 120.00124 * 8.48839 * 20 18 17 42 42 H 1.08005 * 120.00079 * 212.57400 * 21 20 18 43 43 H 1.08001 * 126.46263 * 0.02637 * 23 22 21 44 44 H 1.07999 * 126.04147 * 180.17997 * 24 23 22 45 45 H 1.08001 * 125.54099 * 179.76457 * 25 24 23 46 46 H 1.08996 * 109.58883 * 353.37720 * 28 11 9 47 47 H 1.08999 * 109.58423 * 113.65823 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9917 -1.1038 5 14 2.2108 2.3484 1.6116 6 1 3.5731 2.1292 2.1606 7 1 2.0005 3.7990 1.3737 8 1 1.2008 1.8543 2.5816 9 6 2.0323 -0.7103 -1.2306 10 8 2.6518 -0.0975 -2.0741 11 7 1.7930 -2.0266 -1.3936 12 6 2.1875 -2.7114 -2.6323 13 6 3.0458 -3.9279 -2.2713 14 6 2.2822 -4.8102 -1.2811 15 6 1.9996 -4.0214 -0.0002 16 1 2.9417 -3.6879 0.4348 17 7 1.2932 -4.8754 0.9578 18 6 1.9890 -5.6925 1.7730 19 8 3.2050 -5.7213 1.7129 20 6 1.3066 -6.5179 2.6981 21 6 2.0043 -7.2095 3.6330 22 6 3.1992 -6.6689 4.1688 23 6 4.0708 -7.3074 5.0318 24 6 5.1109 -6.4129 5.3009 25 6 4.8610 -5.2670 4.6224 26 7 3.7019 -5.4094 3.9302 27 1 3.2954 -4.7361 3.3625 28 6 1.1325 -2.8040 -0.3363 29 1 -0.3633 0.4292 -0.9337 30 1 -0.3633 -1.0232 0.0953 31 1 -0.3633 0.5942 0.8385 32 1 1.8934 -0.5139 0.8899 33 1 2.6603 2.9062 -1.1037 34 1 1.2967 -3.0388 -3.1683 35 1 2.7638 -2.0304 -3.2587 36 1 3.2650 -4.4989 -3.1734 37 1 3.9781 -3.5933 -1.8165 38 1 1.3386 -5.1243 -1.7274 39 1 2.8807 -5.6890 -1.0414 40 1 0.3246 -4.8527 1.0055 41 1 0.2302 -6.5970 2.6595 42 1 1.6491 -8.1725 3.9690 43 1 3.9686 -8.3091 5.4223 44 1 5.9613 -6.6008 5.9395 45 1 5.4829 -4.3841 4.6308 46 1 1.0126 -2.1843 0.5523 47 1 0.1546 -3.1369 -0.6842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284871362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:11 Heat of formation + Delta-G solvation = 52.725397 kcal Electronic energy + Delta-G solvation = -29336.826745 eV Core-core repulsion = 25409.459668 eV Total energy + Delta-G solvation = -3927.367077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27374 -41.56671 -40.56914 -38.67205 -36.81484 -35.53746 -34.67755 -34.32278 -32.49946 -31.83746 -31.10873 -28.98067 -26.99038 -25.60289 -25.26233 -23.80016 -22.61480 -21.75554 -21.26628 -21.21179 -20.70040 -19.62877 -19.00118 -18.76482 -17.60230 -17.32350 -16.70498 -16.50905 -16.08147 -15.99072 -15.63407 -15.34212 -15.14958 -14.99685 -14.96085 -14.83144 -14.64566 -14.31771 -14.15863 -14.06081 -13.78288 -13.67354 -13.55373 -13.15667 -13.08840 -12.85587 -12.72299 -12.48149 -12.36766 -12.22354 -12.19058 -11.99697 -11.85946 -11.39339 -11.07800 -10.81603 -10.68959 -10.17624 -9.75196 -9.63175 -9.53566 -8.45118 -0.42358 0.89260 1.06292 1.44381 1.63154 1.67450 1.75791 1.83648 1.92505 2.02120 2.38910 2.47435 2.63825 3.32041 3.56481 3.68806 3.79000 3.90081 4.03333 4.06320 4.12267 4.16641 4.20360 4.24575 4.34154 4.39814 4.46467 4.48583 4.55210 4.69013 4.70162 4.72482 4.78592 4.82395 4.87216 4.91893 5.04336 5.05250 5.10250 5.14826 5.21550 5.30209 5.40307 5.40599 5.43869 5.56145 6.02317 6.18436 6.36303 6.61181 6.69073 7.00105 7.27329 7.29631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.024 4.024 4 N -0.620 5.620 5 Si 0.977 3.023 6 H -0.258 1.258 7 H -0.263 1.263 8 H -0.205 1.205 9 C 0.511 3.489 10 O -0.544 6.544 11 N -0.612 5.612 12 C 0.112 3.888 13 C -0.125 4.125 14 C -0.123 4.123 15 C 0.136 3.864 16 H 0.068 0.932 17 N -0.706 5.706 18 C 0.543 3.457 19 O -0.590 6.590 20 C -0.295 4.295 21 C 0.048 3.952 22 C -0.018 4.018 23 C -0.159 4.159 24 C -0.235 4.235 25 C 0.010 3.990 26 N -0.515 5.515 27 H 0.417 0.583 28 C 0.100 3.900 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.333 0.667 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.420 0.580 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.183 0.817 46 H 0.117 0.883 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 -2.046 5.502 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.272 4.272 4 N -0.232 5.232 5 Si 0.791 3.209 6 H -0.182 1.182 7 H -0.187 1.187 8 H -0.126 1.126 9 C 0.299 3.701 10 O -0.419 6.419 11 N -0.347 5.347 12 C -0.011 4.011 13 C -0.164 4.164 14 C -0.162 4.162 15 C 0.030 3.970 16 H 0.086 0.914 17 N -0.357 5.357 18 C 0.337 3.663 19 O -0.474 6.474 20 C -0.316 4.316 21 C 0.027 3.973 22 C -0.129 4.129 23 C -0.184 4.184 24 C -0.259 4.259 25 C -0.128 4.128 26 N -0.111 5.111 27 H 0.260 0.740 28 C -0.023 4.023 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.258 0.742 41 H 0.187 0.813 42 H 0.190 0.810 43 H 0.174 0.826 44 H 0.165 0.835 45 H 0.200 0.800 46 H 0.135 0.865 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.171 -1.410 4.589 8.629 hybrid contribution 0.346 0.733 -0.506 0.955 sum -6.825 -0.677 4.083 7.981 Atomic orbital electron populations 1.21874 0.89151 1.05193 1.03664 1.20893 0.99914 0.92520 0.97531 1.30488 0.94164 0.99357 1.03157 1.68546 1.07254 1.14749 1.32693 0.85117 0.82446 0.78340 0.74965 1.18208 1.18680 1.12607 1.21006 0.78995 0.81465 0.88634 1.90778 1.40244 1.65590 1.45320 1.48085 1.60693 1.08052 1.17890 1.21572 0.99475 0.93606 0.86411 1.21797 0.98212 0.96203 1.00141 1.21845 1.01232 0.97943 0.95162 1.21122 0.96334 0.90406 0.89138 0.91417 1.45742 1.11260 1.41034 1.37706 1.17548 0.87055 0.79400 0.82266 1.90887 1.15419 1.68374 1.72761 1.22010 1.02135 1.06063 1.01413 1.21247 0.88695 0.96394 0.90940 1.18700 1.00576 0.87730 1.05860 1.21880 0.95083 1.00434 1.01043 1.21156 1.02534 0.94898 1.07298 1.22537 0.90070 1.01753 0.98450 1.42675 1.19009 1.13518 1.35855 0.74015 1.22218 0.96043 0.92105 0.91967 0.93372 0.88507 0.88781 0.84267 0.85026 0.89647 0.91344 0.89652 0.93406 0.89765 0.93329 0.74245 0.81314 0.80972 0.82640 0.83524 0.79984 0.86468 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 1.12 8.78 71.98 0.63 1.75 16 2 C -0.09 0.24 1.81 -12.28 -0.02 0.22 16 3 C -0.02 -0.03 4.78 88.68 0.42 0.40 16 4 N -0.62 -4.89 11.16 24.11 0.27 -4.62 16 5 Si 0.98 -3.64 29.20 68.60 2.00 -1.64 16 6 H -0.26 0.22 7.11 99.48 0.71 0.92 16 7 H -0.26 0.21 7.11 99.48 0.71 0.91 16 8 H -0.21 1.62 7.11 99.48 0.71 2.32 16 9 C 0.51 2.40 6.97 87.66 0.61 3.01 16 10 O -0.54 -8.28 13.68 -3.05 -0.04 -8.32 16 11 N -0.61 0.57 2.97 -818.91 -2.44 -1.87 16 12 C 0.11 0.07 6.44 86.36 0.56 0.63 16 13 C -0.12 0.00 6.08 30.67 0.19 0.19 16 14 C -0.12 0.26 5.46 30.63 0.17 0.43 16 15 C 0.14 -0.66 2.61 45.08 0.12 -0.54 16 16 H 0.07 0.06 7.58 -2.39 -0.02 0.04 16 17 N -0.71 5.43 5.07 -451.17 -2.29 3.14 16 18 C 0.54 -0.48 6.28 85.05 0.53 0.05 16 19 O -0.59 -4.67 12.39 -4.60 -0.06 -4.72 16 20 C -0.29 1.35 9.72 22.47 0.22 1.57 16 21 C 0.05 -0.09 9.76 22.51 0.22 0.13 16 22 C -0.02 -0.07 5.96 39.08 0.23 0.16 16 23 C -0.16 -0.69 10.86 22.66 0.25 -0.45 16 24 C -0.24 -1.13 10.81 22.01 0.24 -0.89 16 25 C 0.01 0.04 11.90 83.45 0.99 1.03 16 26 N -0.51 -2.18 4.52 -187.34 -0.85 -3.02 16 27 H 0.42 1.16 6.09 -92.71 -0.56 0.60 16 28 C 0.10 -0.90 4.46 86.36 0.39 -0.51 16 29 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.10 -1.27 5.80 -2.39 -0.01 -1.29 16 31 H 0.09 -1.09 7.82 -2.39 -0.02 -1.11 16 32 H 0.14 -1.34 6.92 -2.39 -0.02 -1.36 16 33 H 0.33 1.65 8.23 -92.70 -0.76 0.88 16 34 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.07 0.46 7.00 -2.38 -0.02 0.44 16 36 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 39 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.42 -6.10 8.56 -92.71 -0.79 -6.90 16 41 H 0.17 -1.97 8.06 -2.91 -0.02 -1.99 16 42 H 0.17 -1.37 8.06 -2.91 -0.02 -1.39 16 43 H 0.16 0.00 8.06 -2.91 -0.02 -0.02 16 44 H 0.15 0.26 8.06 -2.91 -0.02 0.24 16 45 H 0.18 -0.28 8.06 -2.91 -0.02 -0.31 16 46 H 0.12 -1.57 4.88 -2.39 -0.01 -1.58 16 47 H 0.10 -1.44 8.14 -2.39 -0.02 -1.46 16 Total: 0.00 -27.56 373.18 1.99 -25.57 By element: Atomic # 1 Polarization: -11.34 SS G_CDS: -0.35 Total: -11.69 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.74 Total: 7.18 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -5.30 Total: -6.37 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.10 Total: -13.04 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.00 Total: -1.64 kcal Total: -27.56 1.99 -25.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284871362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.293 kcal (2) G-P(sol) polarization free energy of solvation -27.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds