Wall clock time and date at job start Tue Mar 31 2020 17:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46948 * 2 1 4 4 N 1.27943 * 119.99658 * 264.99657 * 3 2 1 5 5 Si 1.86798 * 120.00334 * 84.99777 * 3 2 1 6 6 H 1.48505 * 109.46912 * 89.99623 * 5 3 2 7 7 H 1.48494 * 109.47640 * 209.99762 * 5 3 2 8 8 H 1.48505 * 109.46926 * 330.00220 * 5 3 2 9 9 C 1.50694 * 109.47086 * 239.99876 * 2 1 3 10 10 O 1.21284 * 120.00059 * 33.15516 * 9 2 1 11 11 N 1.34779 * 119.99974 * 213.15262 * 9 2 1 12 12 C 1.47426 * 125.64792 * 354.97909 * 11 9 2 13 13 C 1.54906 * 104.83105 * 155.90722 * 12 11 9 14 14 C 1.55159 * 101.58453 * 37.01170 * 13 12 11 15 15 H 1.08997 * 110.72017 * 83.03378 * 14 13 12 16 16 N 1.46491 * 110.72378 * 206.13522 * 14 13 12 17 17 C 1.46500 * 120.00228 * 58.54643 * 16 14 13 18 18 C 1.34780 * 119.99962 * 238.54614 * 16 14 13 19 19 O 1.21776 * 120.00305 * 359.97438 * 18 16 14 20 20 C 1.41523 * 119.99813 * 180.02562 * 18 16 14 21 21 C 1.35616 * 119.99563 * 188.43644 * 20 18 16 22 22 C 1.41670 * 120.00048 * 32.34856 * 21 20 18 23 23 C 1.38284 * 126.25709 * 187.08862 * 22 21 20 24 24 C 1.39793 * 107.07721 * 179.80070 * 23 22 21 25 25 C 1.35499 * 107.90827 * 0.38375 * 24 23 22 26 26 N 1.35757 * 108.91360 * 359.61402 * 25 24 23 27 27 H 0.96990 * 125.69211 * 180.25049 * 26 25 24 28 28 C 1.47022 * 125.64832 * 175.02493 * 11 9 2 29 29 H 1.08997 * 109.47065 * 184.40950 * 1 2 3 30 30 H 1.08996 * 109.47099 * 304.41250 * 1 2 3 31 31 H 1.09004 * 109.46966 * 64.41462 * 1 2 3 32 32 H 1.08998 * 109.46763 * 119.99578 * 2 1 3 33 33 H 0.97006 * 119.99662 * 179.97438 * 4 3 2 34 34 H 1.09007 * 110.36297 * 37.07262 * 12 11 9 35 35 H 1.08996 * 110.36880 * 274.74611 * 12 11 9 36 36 H 1.09000 * 111.00896 * 278.93810 * 13 12 11 37 37 H 1.08999 * 111.00430 * 155.08614 * 13 12 11 38 38 H 1.08998 * 109.47114 * 270.00023 * 17 16 14 39 39 H 1.09000 * 109.46957 * 29.99754 * 17 16 14 40 40 H 1.09005 * 109.47547 * 150.00016 * 17 16 14 41 41 H 1.07994 * 120.00071 * 8.43699 * 20 18 16 42 42 H 1.07997 * 119.99808 * 212.34707 * 21 20 18 43 43 H 1.08004 * 126.46144 * 0.03810 * 23 22 21 44 44 H 1.08001 * 126.04709 * 180.23740 * 24 23 22 45 45 H 1.08005 * 125.54424 * 179.87589 * 25 24 23 46 46 H 1.09002 * 109.88586 * 61.60404 * 28 11 9 47 47 H 1.09002 * 109.88199 * 300.44183 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3367 1.9917 -1.1038 5 14 2.2107 2.3485 1.6115 6 1 3.5730 2.1294 2.1606 7 1 2.0004 3.7991 1.3736 8 1 1.2006 1.8543 2.5815 9 6 2.0324 -0.7104 -1.2304 10 8 1.4055 -0.6454 -2.2666 11 7 3.1783 -1.4180 -1.1794 12 6 4.0894 -1.4956 -0.0229 13 6 4.8506 -2.8322 -0.2068 14 6 5.0322 -2.8779 -1.7471 15 1 5.8995 -2.2916 -2.0507 16 7 5.1548 -4.2611 -2.2138 17 6 4.0806 -5.2214 -1.9493 18 6 6.2560 -4.6502 -2.8864 19 8 7.1489 -3.8520 -3.1067 20 6 6.3742 -5.9864 -3.3377 21 6 7.5464 -6.4241 -3.8609 22 6 8.7738 -5.9004 -3.3853 23 6 10.0277 -6.1475 -3.9133 24 6 10.9466 -5.4296 -3.1423 25 6 10.2586 -4.7780 -2.1738 26 7 8.9365 -5.0531 -2.3122 27 1 8.2251 -4.7100 -1.7492 28 6 3.7273 -2.2396 -2.2680 29 1 -0.3633 -1.0246 0.0790 30 1 -0.3633 0.5808 0.8478 31 1 -0.3633 0.4438 -0.9269 32 1 1.8933 -0.5138 0.8900 33 1 2.6596 2.9064 -1.1039 34 1 3.5214 -1.5075 0.9074 35 1 4.7865 -0.6577 -0.0322 36 1 4.2519 -3.6740 0.1411 37 1 5.8154 -2.8053 0.2997 38 1 4.2642 -5.7188 -0.9970 39 1 3.1263 -4.6964 -1.9069 40 1 4.0519 -5.9635 -2.7472 41 1 5.5311 -6.6573 -3.2655 42 1 7.5440 -7.1719 -4.6401 43 1 10.2541 -6.7737 -4.7637 44 1 12.0160 -5.4013 -3.2908 45 1 10.6913 -4.1398 -1.4174 46 1 3.9411 -1.6128 -3.1339 47 1 3.0156 -3.0194 -2.5391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293698287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:00 Heat of formation + Delta-G solvation = 57.855037 kcal Electronic energy + Delta-G solvation = -29004.283245 eV Core-core repulsion = 25077.138606 eV Total energy + Delta-G solvation = -3927.144639 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29929 -41.48996 -40.59745 -38.76984 -36.94618 -36.15273 -34.77721 -33.28174 -32.02863 -31.78332 -30.22907 -29.03750 -28.08539 -26.34313 -25.08409 -24.27767 -22.44623 -21.92959 -21.22342 -21.06110 -20.06418 -19.70687 -18.97203 -18.84950 -18.11135 -17.29066 -17.10058 -16.57460 -16.19718 -15.99788 -15.60616 -15.19890 -15.08423 -14.93654 -14.79219 -14.65176 -14.62244 -14.45191 -14.17189 -14.04135 -13.78412 -13.65419 -13.42761 -13.30004 -13.15251 -13.08689 -12.99136 -12.79262 -12.75981 -12.70808 -12.43254 -12.32413 -11.94573 -11.53228 -11.00673 -10.79582 -10.67665 -9.93498 -9.85938 -9.63504 -9.62849 -8.43936 -0.47901 0.66359 0.85657 1.24799 1.54174 1.61720 1.68633 1.71519 1.84039 2.04522 2.15445 2.45762 2.57801 3.23188 3.29693 3.38008 3.71700 3.76592 3.83248 3.90972 3.99234 4.00387 4.07400 4.11455 4.16310 4.30111 4.31929 4.39773 4.44798 4.50181 4.53918 4.61584 4.62459 4.66400 4.69171 4.80973 4.85744 4.87838 4.88525 4.97274 5.08735 5.18828 5.28029 5.37750 5.42359 5.47965 6.05535 6.22566 6.27607 6.48552 6.71907 6.75722 7.12857 7.29620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C -0.007 4.007 4 N -0.611 5.611 5 Si 0.934 3.066 6 H -0.235 1.235 7 H -0.242 1.242 8 H -0.228 1.228 9 C 0.551 3.449 10 O -0.518 6.518 11 N -0.621 5.621 12 C 0.098 3.902 13 C -0.143 4.143 14 C 0.129 3.871 15 H 0.118 0.882 16 N -0.607 5.607 17 C 0.071 3.929 18 C 0.551 3.449 19 O -0.551 6.551 20 C -0.309 4.309 21 C 0.066 3.934 22 C -0.006 4.006 23 C -0.135 4.135 24 C -0.217 4.217 25 C 0.028 3.972 26 N -0.511 5.511 27 H 0.416 0.584 28 C 0.099 3.901 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.341 0.659 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.074 0.926 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 -3.096 7.184 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.256 4.256 4 N -0.223 5.223 5 Si 0.748 3.252 6 H -0.158 1.158 7 H -0.165 1.165 8 H -0.150 1.150 9 C 0.339 3.661 10 O -0.392 6.392 11 N -0.358 5.358 12 C -0.025 4.025 13 C -0.182 4.182 14 C 0.025 3.975 15 H 0.136 0.864 16 N -0.338 5.338 17 C -0.072 4.072 18 C 0.347 3.653 19 O -0.433 6.433 20 C -0.330 4.330 21 C 0.045 3.955 22 C -0.117 4.117 23 C -0.160 4.160 24 C -0.241 4.241 25 C -0.111 4.111 26 N -0.107 5.107 27 H 0.259 0.741 28 C -0.024 4.024 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.157 0.843 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.092 0.908 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.084 -2.369 6.348 6.776 hybrid contribution -0.235 0.656 0.480 0.846 sum -0.320 -1.714 6.828 7.047 Atomic orbital electron populations 1.21635 0.90473 1.03320 1.03779 1.20657 0.99037 0.92766 0.97469 1.30104 0.94267 0.98437 1.02840 1.68238 1.06857 1.16118 1.31121 0.85712 0.83264 0.80079 0.76145 1.15815 1.16501 1.15019 1.19867 0.78914 0.77390 0.89946 1.90714 1.56605 1.60118 1.31715 1.48377 1.22756 1.49166 1.15474 1.22369 0.92598 0.97765 0.89808 1.23174 1.01641 0.97656 0.95740 1.22046 0.98777 0.83187 0.93525 0.86430 1.47709 1.20023 1.10183 1.55931 1.21913 0.90485 0.92837 1.01943 1.17245 0.81469 0.89506 0.77047 1.90871 1.39577 1.55588 1.57233 1.21835 1.01405 0.96299 1.13511 1.20913 0.89462 0.94321 0.90774 1.18247 0.94730 1.03073 0.95615 1.21584 0.91197 1.02583 1.00672 1.20889 0.99759 1.04218 0.99186 1.22163 0.83396 1.03079 1.02442 1.42592 1.08105 1.35361 1.24649 0.74126 1.22181 0.94646 0.94815 0.90806 0.91296 0.91191 0.90551 0.87652 0.84150 0.89776 0.90852 0.89708 0.89239 0.92082 0.90660 0.90129 0.84285 0.83427 0.83940 0.84260 0.81720 0.90773 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.07 8.87 37.16 0.33 0.40 16 2 C -0.08 0.02 2.25 -92.92 -0.21 -0.18 16 3 C -0.01 0.00 4.83 -13.90 -0.07 -0.07 16 4 N -0.61 -1.25 12.91 56.23 0.73 -0.52 16 5 Si 0.93 -2.21 29.22 -169.99 -4.97 -7.17 16 6 H -0.24 0.53 7.11 56.52 0.40 0.93 16 7 H -0.24 0.29 7.11 56.52 0.40 0.69 16 8 H -0.23 0.61 7.11 56.52 0.40 1.01 16 9 C 0.55 1.63 6.16 -10.99 -0.07 1.57 16 10 O -0.52 -3.83 16.48 5.55 0.09 -3.74 16 11 N -0.62 -0.50 3.33 -170.52 -0.57 -1.07 16 12 C 0.10 -0.25 6.73 -2.53 -0.02 -0.27 16 13 C -0.14 0.43 6.65 -24.58 -0.16 0.27 16 14 C 0.13 -0.07 3.36 -66.10 -0.22 -0.29 16 15 H 0.12 0.15 6.99 -51.93 -0.36 -0.21 16 16 N -0.61 0.38 2.88 -175.27 -0.51 -0.13 16 17 C 0.07 -0.22 8.97 59.85 0.54 0.32 16 18 C 0.55 0.87 6.20 -15.01 -0.09 0.77 16 19 O -0.55 -2.58 12.11 5.12 0.06 -2.52 16 20 C -0.31 0.02 9.02 -39.27 -0.35 -0.34 16 21 C 0.07 0.02 9.76 -39.21 -0.38 -0.36 16 22 C -0.01 -0.01 5.95 -83.90 -0.50 -0.51 16 23 C -0.13 -0.29 10.86 -38.98 -0.42 -0.72 16 24 C -0.22 -0.45 10.81 -39.98 -0.43 -0.88 16 25 C 0.03 0.04 11.90 -16.79 -0.20 -0.16 16 26 N -0.51 -1.14 4.51 -10.56 -0.05 -1.19 16 27 H 0.42 0.70 6.14 -40.82 -0.25 0.45 16 28 C 0.10 0.11 6.43 -3.06 -0.02 0.09 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.07 -0.18 7.84 -51.93 -0.41 -0.58 16 31 H 0.08 0.15 7.70 -51.93 -0.40 -0.25 16 32 H 0.11 -0.40 6.15 -51.93 -0.32 -0.72 16 33 H 0.34 0.03 8.23 -40.82 -0.34 -0.30 16 34 H 0.08 -0.40 6.64 -51.93 -0.34 -0.74 16 35 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 36 H 0.08 -0.30 7.23 -51.93 -0.38 -0.68 16 37 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 38 H 0.06 -0.25 8.08 -51.93 -0.42 -0.67 16 39 H 0.07 -0.22 6.18 -51.93 -0.32 -0.55 16 40 H 0.08 -0.31 5.99 -51.93 -0.31 -0.62 16 41 H 0.14 -0.35 6.02 -52.49 -0.32 -0.67 16 42 H 0.15 -0.37 8.06 -52.49 -0.42 -0.79 16 43 H 0.14 0.01 8.06 -52.48 -0.42 -0.41 16 44 H 0.14 0.06 8.06 -52.49 -0.42 -0.36 16 45 H 0.17 -0.20 8.06 -52.48 -0.42 -0.63 16 46 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.09 6.03 -51.93 -0.31 -0.22 16 LS Contribution 375.52 15.07 5.66 5.66 Total: 0.00 -9.90 375.52 -8.49 -18.39 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -6.66 Total: -7.36 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.28 Total: -0.35 kcal Atomic # 7 Polarization: -2.51 SS G_CDS: -0.39 Total: -2.91 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: 0.15 Total: -6.25 kcal Atomic # 14 Polarization: -2.21 SS G_CDS: -4.97 Total: -7.17 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -9.90 -8.49 -18.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293698287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.244 kcal (2) G-P(sol) polarization free energy of solvation -9.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds