Wall clock time and date at job start Tue Mar 31 2020 17:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46948 * 2 1 4 4 N 1.27943 * 119.99658 * 264.99657 * 3 2 1 5 5 Si 1.86798 * 120.00334 * 84.99777 * 3 2 1 6 6 H 1.48505 * 109.46912 * 89.99623 * 5 3 2 7 7 H 1.48494 * 109.47640 * 209.99762 * 5 3 2 8 8 H 1.48505 * 109.46926 * 330.00220 * 5 3 2 9 9 C 1.50694 * 109.47086 * 239.99876 * 2 1 3 10 10 O 1.21284 * 120.00059 * 33.15516 * 9 2 1 11 11 N 1.34779 * 119.99974 * 213.15262 * 9 2 1 12 12 C 1.47426 * 125.64792 * 354.97909 * 11 9 2 13 13 C 1.54906 * 104.83105 * 155.90722 * 12 11 9 14 14 C 1.55159 * 101.58453 * 37.01170 * 13 12 11 15 15 H 1.08997 * 110.72017 * 83.03378 * 14 13 12 16 16 N 1.46491 * 110.72378 * 206.13522 * 14 13 12 17 17 C 1.46500 * 120.00228 * 58.54643 * 16 14 13 18 18 C 1.34780 * 119.99962 * 238.54614 * 16 14 13 19 19 O 1.21776 * 120.00305 * 359.97438 * 18 16 14 20 20 C 1.41523 * 119.99813 * 180.02562 * 18 16 14 21 21 C 1.35616 * 119.99563 * 188.43644 * 20 18 16 22 22 C 1.41670 * 120.00048 * 32.34856 * 21 20 18 23 23 C 1.38284 * 126.25709 * 187.08862 * 22 21 20 24 24 C 1.39793 * 107.07721 * 179.80070 * 23 22 21 25 25 C 1.35499 * 107.90827 * 0.38375 * 24 23 22 26 26 N 1.35757 * 108.91360 * 359.61402 * 25 24 23 27 27 H 0.96990 * 125.69211 * 180.25049 * 26 25 24 28 28 C 1.47022 * 125.64832 * 175.02493 * 11 9 2 29 29 H 1.08997 * 109.47065 * 184.40950 * 1 2 3 30 30 H 1.08996 * 109.47099 * 304.41250 * 1 2 3 31 31 H 1.09004 * 109.46966 * 64.41462 * 1 2 3 32 32 H 1.08998 * 109.46763 * 119.99578 * 2 1 3 33 33 H 0.97006 * 119.99662 * 179.97438 * 4 3 2 34 34 H 1.09007 * 110.36297 * 37.07262 * 12 11 9 35 35 H 1.08996 * 110.36880 * 274.74611 * 12 11 9 36 36 H 1.09000 * 111.00896 * 278.93810 * 13 12 11 37 37 H 1.08999 * 111.00430 * 155.08614 * 13 12 11 38 38 H 1.08998 * 109.47114 * 270.00023 * 17 16 14 39 39 H 1.09000 * 109.46957 * 29.99754 * 17 16 14 40 40 H 1.09005 * 109.47547 * 150.00016 * 17 16 14 41 41 H 1.07994 * 120.00071 * 8.43699 * 20 18 16 42 42 H 1.07997 * 119.99808 * 212.34707 * 21 20 18 43 43 H 1.08004 * 126.46144 * 0.03810 * 23 22 21 44 44 H 1.08001 * 126.04709 * 180.23740 * 24 23 22 45 45 H 1.08005 * 125.54424 * 179.87589 * 25 24 23 46 46 H 1.09002 * 109.88586 * 61.60404 * 28 11 9 47 47 H 1.09002 * 109.88199 * 300.44183 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3367 1.9917 -1.1038 5 14 2.2107 2.3485 1.6115 6 1 3.5730 2.1294 2.1606 7 1 2.0004 3.7991 1.3736 8 1 1.2006 1.8543 2.5815 9 6 2.0324 -0.7104 -1.2304 10 8 1.4055 -0.6454 -2.2666 11 7 3.1783 -1.4180 -1.1794 12 6 4.0894 -1.4956 -0.0229 13 6 4.8506 -2.8322 -0.2068 14 6 5.0322 -2.8779 -1.7471 15 1 5.8995 -2.2916 -2.0507 16 7 5.1548 -4.2611 -2.2138 17 6 4.0806 -5.2214 -1.9493 18 6 6.2560 -4.6502 -2.8864 19 8 7.1489 -3.8520 -3.1067 20 6 6.3742 -5.9864 -3.3377 21 6 7.5464 -6.4241 -3.8609 22 6 8.7738 -5.9004 -3.3853 23 6 10.0277 -6.1475 -3.9133 24 6 10.9466 -5.4296 -3.1423 25 6 10.2586 -4.7780 -2.1738 26 7 8.9365 -5.0531 -2.3122 27 1 8.2251 -4.7100 -1.7492 28 6 3.7273 -2.2396 -2.2680 29 1 -0.3633 -1.0246 0.0790 30 1 -0.3633 0.5808 0.8478 31 1 -0.3633 0.4438 -0.9269 32 1 1.8933 -0.5138 0.8900 33 1 2.6596 2.9064 -1.1039 34 1 3.5214 -1.5075 0.9074 35 1 4.7865 -0.6577 -0.0322 36 1 4.2519 -3.6740 0.1411 37 1 5.8154 -2.8053 0.2997 38 1 4.2642 -5.7188 -0.9970 39 1 3.1263 -4.6964 -1.9069 40 1 4.0519 -5.9635 -2.7472 41 1 5.5311 -6.6573 -3.2655 42 1 7.5440 -7.1719 -4.6401 43 1 10.2541 -6.7737 -4.7637 44 1 12.0160 -5.4013 -3.2908 45 1 10.6913 -4.1398 -1.4174 46 1 3.9411 -1.6128 -3.1339 47 1 3.0156 -3.0194 -2.5391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293698287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:59 Heat of formation + Delta-G solvation = 58.932573 kcal Electronic energy + Delta-G solvation = -29004.236520 eV Core-core repulsion = 25077.138606 eV Total energy + Delta-G solvation = -3927.097914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35660 -41.55674 -40.69895 -38.84058 -37.02786 -36.19709 -34.79788 -33.31544 -32.01778 -31.87087 -30.20707 -29.07281 -27.97435 -26.35404 -25.10711 -24.23682 -22.41305 -21.99057 -21.29740 -21.10202 -20.08569 -19.73788 -18.97651 -18.86983 -18.15174 -17.34477 -17.11504 -16.59709 -16.21903 -16.05501 -15.57887 -15.23799 -15.08266 -14.96053 -14.80851 -14.63225 -14.52200 -14.44614 -14.15576 -14.01171 -13.76051 -13.66290 -13.38418 -13.31937 -13.15033 -13.04904 -12.89718 -12.72645 -12.69253 -12.65531 -12.33689 -12.21382 -11.84192 -11.46717 -11.10922 -10.98974 -10.71339 -9.93669 -9.89203 -9.73838 -9.68965 -8.49587 -0.49419 0.75162 0.99323 1.46466 1.60240 1.62157 1.67935 1.74706 1.90105 1.96167 2.16015 2.40423 2.53835 3.25615 3.37811 3.43743 3.77713 3.81931 3.94560 4.01092 4.03932 4.08423 4.15446 4.20360 4.25900 4.30858 4.43586 4.45353 4.49749 4.57729 4.64641 4.66059 4.68415 4.74755 4.86076 4.89572 4.91112 4.94758 4.97376 5.04503 5.10029 5.17599 5.29998 5.34368 5.37360 5.48944 5.98983 6.15308 6.28719 6.41066 6.65311 6.83166 7.07588 7.13756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.010 4.010 4 N -0.660 5.660 5 Si 0.985 3.015 6 H -0.230 1.230 7 H -0.266 1.266 8 H -0.211 1.211 9 C 0.543 3.457 10 O -0.577 6.577 11 N -0.620 5.620 12 C 0.091 3.909 13 C -0.129 4.129 14 C 0.133 3.867 15 H 0.095 0.905 16 N -0.601 5.601 17 C 0.066 3.934 18 C 0.543 3.457 19 O -0.590 6.590 20 C -0.306 4.306 21 C 0.056 3.944 22 C -0.023 4.023 23 C -0.154 4.154 24 C -0.235 4.235 25 C 0.015 3.985 26 N -0.515 5.515 27 H 0.417 0.583 28 C 0.101 3.899 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.042 0.958 32 H 0.149 0.851 33 H 0.345 0.655 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.166 0.834 42 H 0.175 0.825 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.187 0.813 46 H 0.038 0.962 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 -4.188 10.019 10.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.256 4.256 4 N -0.274 5.274 5 Si 0.798 3.202 6 H -0.153 1.153 7 H -0.190 1.190 8 H -0.132 1.132 9 C 0.332 3.668 10 O -0.455 6.455 11 N -0.354 5.354 12 C -0.031 4.031 13 C -0.168 4.168 14 C 0.028 3.972 15 H 0.113 0.887 16 N -0.332 5.332 17 C -0.076 4.076 18 C 0.340 3.660 19 O -0.475 6.475 20 C -0.327 4.327 21 C 0.036 3.964 22 C -0.134 4.134 23 C -0.180 4.180 24 C -0.259 4.259 25 C -0.123 4.123 26 N -0.111 5.111 27 H 0.259 0.741 28 C -0.023 4.023 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.184 0.816 42 H 0.192 0.808 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.204 0.796 46 H 0.057 0.943 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.434 -3.499 9.216 9.867 hybrid contribution -0.155 1.011 -0.458 1.121 sum -0.588 -2.488 8.758 9.123 Atomic orbital electron populations 1.21641 0.90431 1.03940 1.03126 1.20937 0.99175 0.92869 0.97315 1.30783 0.92339 0.98405 1.04061 1.68308 1.09048 1.16935 1.33120 0.85023 0.83762 0.77737 0.73705 1.15265 1.18975 1.13201 1.20590 0.78833 0.76979 0.90367 1.90679 1.58510 1.62246 1.34047 1.48491 1.22526 1.48132 1.16297 1.22682 0.92511 0.98150 0.89739 1.23149 1.02565 0.97899 0.93151 1.21907 0.96617 0.83045 0.95599 0.88733 1.47767 1.20057 1.10369 1.54987 1.22118 0.89515 0.92536 1.03396 1.17595 0.81531 0.89998 0.76921 1.90853 1.41071 1.56681 1.58853 1.22056 1.02256 0.95762 1.12630 1.21284 0.88858 0.94996 0.91265 1.18685 0.95688 1.03197 0.95831 1.21903 0.91402 1.03242 1.01413 1.21180 1.00493 1.04634 0.99591 1.22602 0.83347 1.03346 1.03013 1.42671 1.08305 1.35355 1.24759 0.74107 1.22072 0.95595 0.94310 0.90327 0.90624 0.88515 0.93915 0.83315 0.83720 0.86374 0.90605 0.88201 0.87838 0.90058 0.90680 0.89105 0.81643 0.80809 0.82545 0.83247 0.79579 0.94325 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.16 8.87 71.98 0.64 0.80 16 2 C -0.08 0.11 2.25 -12.29 -0.03 0.08 16 3 C -0.01 0.01 4.83 88.68 0.43 0.43 16 4 N -0.66 -3.80 12.91 24.11 0.31 -3.49 16 5 Si 0.99 -6.56 29.22 68.60 2.00 -4.56 16 6 H -0.23 1.67 7.11 99.48 0.71 2.38 16 7 H -0.27 0.76 7.11 99.48 0.71 1.46 16 8 H -0.21 1.94 7.11 99.48 0.71 2.64 16 9 C 0.54 3.86 6.16 87.65 0.54 4.40 16 10 O -0.58 -10.30 16.48 -3.04 -0.05 -10.35 16 11 N -0.62 -1.40 3.33 -811.78 -2.70 -4.10 16 12 C 0.09 -0.59 6.73 86.85 0.58 -0.01 16 13 C -0.13 0.96 6.65 31.99 0.21 1.18 16 14 C 0.13 -0.03 3.36 46.18 0.16 0.13 16 15 H 0.09 0.45 6.99 -2.39 -0.02 0.44 16 16 N -0.60 0.65 2.88 -826.62 -2.38 -1.73 16 17 C 0.07 -0.47 8.97 127.77 1.15 0.67 16 18 C 0.54 2.04 6.20 85.05 0.53 2.56 16 19 O -0.59 -6.53 12.11 -4.59 -0.06 -6.58 16 20 C -0.31 0.15 9.02 22.47 0.20 0.36 16 21 C 0.06 0.03 9.76 22.51 0.22 0.25 16 22 C -0.02 -0.13 5.95 39.08 0.23 0.11 16 23 C -0.15 -0.80 10.86 22.66 0.25 -0.56 16 24 C -0.24 -1.20 10.81 22.01 0.24 -0.96 16 25 C 0.02 0.06 11.90 83.45 0.99 1.06 16 26 N -0.52 -2.81 4.51 -187.33 -0.85 -3.65 16 27 H 0.42 1.84 6.14 -92.72 -0.57 1.27 16 28 C 0.10 0.43 6.43 86.73 0.56 0.99 16 29 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.10 -0.67 7.84 -2.39 -0.02 -0.69 16 31 H 0.04 0.26 7.70 -2.39 -0.02 0.24 16 32 H 0.15 -1.60 6.15 -2.39 -0.01 -1.61 16 33 H 0.35 0.75 8.23 -92.70 -0.76 -0.02 16 34 H 0.12 -1.55 6.64 -2.38 -0.02 -1.56 16 35 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.10 -0.99 7.23 -2.39 -0.02 -1.01 16 37 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H 0.08 -0.86 8.08 -2.39 -0.02 -0.88 16 39 H 0.07 -0.50 6.18 -2.39 -0.01 -0.51 16 40 H 0.09 -0.82 5.99 -2.38 -0.01 -0.84 16 41 H 0.17 -1.11 6.02 -2.91 -0.02 -1.12 16 42 H 0.17 -1.01 8.06 -2.91 -0.02 -1.03 16 43 H 0.16 0.13 8.06 -2.91 -0.02 0.10 16 44 H 0.15 0.26 8.06 -2.91 -0.02 0.23 16 45 H 0.19 -0.38 8.06 -2.91 -0.02 -0.40 16 46 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.07 0.32 6.03 -2.39 -0.01 0.30 16 Total: 0.00 -28.51 375.52 3.61 -24.90 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: 0.44 Total: -1.92 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.89 Total: 11.48 kcal Atomic # 7 Polarization: -7.35 SS G_CDS: -5.62 Total: -12.97 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.11 Total: -16.93 kcal Atomic # 14 Polarization: -6.56 SS G_CDS: 2.00 Total: -4.56 kcal Total: -28.51 3.61 -24.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293698287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.830 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds