Wall clock time and date at job start Tue Mar 31 2020 17:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47137 * 2 1 4 4 N 1.27940 * 120.00024 * 94.99985 * 3 2 1 5 5 Si 1.86802 * 120.00035 * 274.99659 * 3 2 1 6 6 H 1.48501 * 109.46861 * 60.00072 * 5 3 2 7 7 H 1.48498 * 109.47130 * 179.97438 * 5 3 2 8 8 H 1.48495 * 109.47202 * 300.00483 * 5 3 2 9 9 C 1.50703 * 109.46788 * 119.99804 * 2 1 3 10 10 O 1.21276 * 119.99967 * 257.03387 * 9 2 1 11 11 N 1.34777 * 119.99821 * 77.04448 * 9 2 1 12 12 C 1.47019 * 125.64779 * 175.55949 * 11 9 2 13 13 C 1.54372 * 107.29124 * 181.12171 * 12 11 9 14 14 C 1.55166 * 102.91551 * 22.13636 * 13 12 11 15 15 H 1.08999 * 111.00261 * 82.64260 * 14 13 12 16 16 C 1.52999 * 110.99940 * 206.45184 * 14 13 12 17 17 N 1.46503 * 109.47405 * 290.41974 * 16 14 13 18 18 C 1.34771 * 120.00090 * 180.02562 * 17 16 14 19 19 O 1.21783 * 120.00035 * 359.97438 * 18 17 16 20 20 C 1.41517 * 120.00122 * 180.02562 * 18 17 16 21 21 C 1.35620 * 120.00128 * 187.60326 * 20 18 17 22 22 C 1.41674 * 119.99556 * 32.80556 * 21 20 18 23 23 C 1.38286 * 126.25426 * 187.08400 * 22 21 20 24 24 C 1.39787 * 107.07534 * 180.02562 * 23 22 21 25 25 C 1.35494 * 107.90927 * 0.25735 * 24 23 22 26 26 N 1.35753 * 108.91555 * 359.57566 * 25 24 23 27 27 H 0.96999 * 125.69747 * 180.17266 * 26 25 24 28 28 C 1.47418 * 125.65100 * 355.59140 * 11 9 2 29 29 H 1.08999 * 109.47127 * 304.05630 * 1 2 3 30 30 H 1.09004 * 109.46848 * 64.04754 * 1 2 3 31 31 H 1.08999 * 109.47069 * 184.05168 * 1 2 3 32 32 H 1.09005 * 109.47146 * 239.99704 * 2 1 3 33 33 H 0.97007 * 120.00385 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.88109 * 300.50942 * 12 11 9 35 35 H 1.09000 * 109.88588 * 61.51497 * 12 11 9 36 36 H 1.08995 * 110.70679 * 263.79508 * 13 12 11 37 37 H 1.08997 * 110.75717 * 140.50048 * 13 12 11 38 38 H 1.09004 * 109.46489 * 170.42265 * 16 14 13 39 39 H 1.09001 * 109.47355 * 50.42271 * 16 14 13 40 40 H 0.97000 * 119.99885 * 359.97438 * 17 16 14 41 41 H 1.07999 * 119.99804 * 7.60539 * 20 18 17 42 42 H 1.07996 * 119.99973 * 212.80605 * 21 20 18 43 43 H 1.08001 * 126.45858 * 0.02562 * 23 22 21 44 44 H 1.08004 * 126.03954 * 180.02562 * 24 23 22 45 45 H 1.08005 * 125.54096 * 179.73649 * 25 24 23 46 46 H 1.09004 * 110.36417 * 36.99916 * 28 11 9 47 47 H 1.09002 * 110.37046 * 274.68312 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9917 1.1038 5 14 2.2109 2.3484 -1.6116 6 1 0.8885 2.4354 -2.2817 7 1 2.7192 3.7172 -1.3412 8 1 3.1660 1.6301 -2.4930 9 6 2.0323 -0.7104 1.2305 10 8 2.4566 -0.0706 2.1694 11 7 2.0101 -2.0568 1.2876 12 6 2.5507 -2.8770 2.3814 13 6 2.3266 -4.3560 1.9998 14 6 2.1811 -4.2976 0.4560 15 1 3.1576 -4.2793 -0.0279 16 6 1.3385 -5.4658 -0.0598 17 7 2.0868 -6.7153 0.0987 18 6 1.5386 -7.8832 -0.2909 19 8 0.4209 -7.9000 -0.7743 20 6 2.2612 -9.0902 -0.1372 21 6 1.7785 -10.2417 -0.6668 22 6 1.0329 -10.2095 -1.8711 23 6 0.3680 -11.2748 -2.4499 24 6 -0.2298 -10.7986 -3.6204 25 6 0.0760 -9.4839 -3.7392 26 7 0.8382 -9.1118 -2.6793 27 1 1.1904 -8.2222 -2.5200 28 6 1.4405 -2.9509 0.2632 29 1 -0.3633 0.5755 0.8514 30 1 -0.3633 0.4498 -0.9241 31 1 -0.3633 -1.0251 0.0726 32 1 1.8934 -0.5139 -0.8900 33 1 2.6604 2.9062 1.1038 34 1 3.6168 -2.6826 2.4985 35 1 2.0281 -2.6478 3.3100 36 1 1.4150 -4.7385 2.4588 37 1 3.1865 -4.9627 2.2834 38 1 1.1094 -5.3108 -1.1142 39 1 0.4104 -5.5235 0.5090 40 1 2.9771 -6.7019 0.4835 41 1 3.1970 -9.0944 0.4019 42 1 1.9626 -11.1831 -0.1706 43 1 0.3196 -12.2845 -2.0695 44 1 -0.8264 -11.3772 -4.3100 45 1 -0.2381 -8.8366 -4.5447 46 1 1.6289 -2.5537 -0.7342 47 1 0.3703 -3.0800 0.4250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354933544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:10 Heat of formation + Delta-G solvation = 49.699620 kcal Electronic energy + Delta-G solvation = -28065.874192 eV Core-core repulsion = 24138.375907 eV Total energy + Delta-G solvation = -3927.498285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21745 -41.33424 -40.52858 -38.99011 -36.68905 -35.93204 -34.69424 -33.72395 -32.41768 -31.78418 -30.67354 -29.31995 -27.12191 -26.18546 -24.53518 -24.10686 -22.14729 -21.80445 -21.45741 -21.21827 -20.62646 -19.64525 -19.03526 -18.73282 -17.86501 -17.43471 -16.90859 -16.42027 -16.20384 -16.10510 -15.60786 -15.29480 -15.07337 -14.96127 -14.88734 -14.72443 -14.57786 -14.51400 -14.19149 -14.09790 -13.93006 -13.76415 -13.53073 -13.14800 -13.07530 -12.97662 -12.86593 -12.81277 -12.53005 -12.37770 -12.31257 -12.15933 -11.92631 -11.37826 -11.06137 -10.75233 -10.69514 -10.19561 -9.67627 -9.59370 -9.47077 -8.44436 -0.48159 0.85579 0.99984 1.32137 1.65242 1.70076 1.75146 1.85852 1.99613 2.06601 2.22262 2.46793 2.59444 3.18620 3.28160 3.36990 3.52681 3.83764 3.95347 4.00084 4.02648 4.06813 4.09310 4.10211 4.15666 4.29821 4.31606 4.42912 4.49803 4.50833 4.55209 4.58025 4.60444 4.68752 4.69747 4.77925 4.86122 4.96483 4.99885 5.03121 5.07602 5.13347 5.30303 5.31398 5.41140 5.42759 6.05061 6.22721 6.43841 6.53647 6.71457 6.99651 7.19976 7.39326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.020 4.020 4 N -0.573 5.573 5 Si 0.934 3.066 6 H -0.234 1.234 7 H -0.247 1.247 8 H -0.238 1.238 9 C 0.529 3.471 10 O -0.489 6.489 11 N -0.627 5.627 12 C 0.109 3.891 13 C -0.127 4.127 14 C -0.116 4.116 15 H 0.094 0.906 16 C 0.131 3.869 17 N -0.729 5.729 18 C 0.547 3.453 19 O -0.553 6.553 20 C -0.308 4.308 21 C 0.065 3.935 22 C -0.006 4.006 23 C -0.135 4.135 24 C -0.217 4.217 25 C 0.028 3.972 26 N -0.511 5.511 27 H 0.417 0.583 28 C 0.107 3.893 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.332 0.668 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.082 0.918 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -2.236 -3.990 4.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.270 4.270 4 N -0.185 5.185 5 Si 0.749 3.251 6 H -0.157 1.157 7 H -0.170 1.170 8 H -0.160 1.160 9 C 0.316 3.684 10 O -0.360 6.360 11 N -0.364 5.364 12 C -0.013 4.013 13 C -0.165 4.165 14 C -0.136 4.136 15 H 0.113 0.887 16 C 0.006 3.994 17 N -0.380 5.380 18 C 0.341 3.659 19 O -0.435 6.435 20 C -0.330 4.330 21 C 0.044 3.956 22 C -0.117 4.117 23 C -0.161 4.161 24 C -0.241 4.241 25 C -0.111 4.111 26 N -0.107 5.107 27 H 0.259 0.741 28 C -0.017 4.017 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.236 0.764 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.100 0.900 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.214 -1.376 -3.470 3.925 hybrid contribution 0.742 0.813 0.053 1.102 sum 1.956 -0.563 -3.417 3.977 Atomic orbital electron populations 1.21703 0.90955 1.03331 1.03764 1.20583 0.98448 0.93175 0.97638 1.29883 0.95976 0.98735 1.02414 1.68505 1.05062 1.14283 1.30663 0.85764 0.82937 0.79867 0.76547 1.15681 1.16955 1.16036 1.20100 0.79092 0.79891 0.89294 1.90822 1.44180 1.63797 1.37172 1.48559 1.60764 1.05060 1.22021 1.21875 0.99429 0.89296 0.90747 1.22769 1.03478 0.95681 0.94614 1.22623 1.00225 0.93880 0.96835 0.88746 1.21215 0.94757 0.81874 1.01523 1.45943 1.20219 1.06487 1.65370 1.17201 0.86801 0.83927 0.77980 1.90887 1.19840 1.87205 1.45546 1.21732 1.03567 0.93197 1.14506 1.20887 0.87434 0.98814 0.88462 1.18251 1.09778 0.87719 0.95933 1.21585 0.99574 0.98148 0.96793 1.20889 1.07637 0.94693 1.00841 1.22168 0.98186 0.97159 0.93598 1.42588 1.38973 1.11100 1.17991 0.74097 1.22269 0.97976 0.88774 0.92668 0.91292 0.90752 0.91246 0.87521 0.85060 0.91437 0.91253 0.90054 0.89779 0.91076 0.90855 0.76366 0.84697 0.83487 0.83950 0.84258 0.81689 0.89971 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.27 9.03 37.16 0.34 0.60 16 2 C -0.08 0.04 2.01 -92.92 -0.19 -0.15 16 3 C -0.02 -0.01 4.82 -13.90 -0.07 -0.08 16 4 N -0.57 -1.86 11.12 56.23 0.63 -1.24 16 5 Si 0.93 -1.31 29.38 -169.99 -4.99 -6.31 16 6 H -0.23 0.36 7.11 56.52 0.40 0.77 16 7 H -0.25 0.08 7.11 56.52 0.40 0.48 16 8 H -0.24 0.28 7.11 56.52 0.40 0.69 16 9 C 0.53 1.33 7.02 -10.98 -0.08 1.25 16 10 O -0.49 -3.43 14.64 5.56 0.08 -3.35 16 11 N -0.63 0.07 3.33 -170.50 -0.57 -0.50 16 12 C 0.11 -0.06 6.87 -3.04 -0.02 -0.08 16 13 C -0.13 0.43 6.28 -24.87 -0.16 0.28 16 14 C -0.12 0.49 3.07 -88.47 -0.27 0.21 16 15 H 0.09 -0.43 8.14 -51.93 -0.42 -0.85 16 16 C 0.13 -0.40 5.12 -4.04 -0.02 -0.42 16 17 N -0.73 1.92 5.44 -63.25 -0.34 1.58 16 18 C 0.55 0.21 6.34 -15.01 -0.10 0.11 16 19 O -0.55 -2.12 12.73 5.11 0.07 -2.06 16 20 C -0.31 0.27 9.72 -39.27 -0.38 -0.11 16 21 C 0.06 -0.01 9.76 -39.21 -0.38 -0.39 16 22 C -0.01 -0.01 5.94 -83.90 -0.50 -0.51 16 23 C -0.14 -0.25 10.86 -38.98 -0.42 -0.67 16 24 C -0.22 -0.38 10.81 -39.98 -0.43 -0.82 16 25 C 0.03 0.04 11.90 -16.80 -0.20 -0.16 16 26 N -0.51 -0.95 4.51 -10.56 -0.05 -1.00 16 27 H 0.42 0.51 6.16 -40.82 -0.25 0.26 16 28 C 0.11 -0.36 5.33 -2.54 -0.01 -0.38 16 29 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.07 -0.26 8.05 -51.93 -0.42 -0.68 16 31 H 0.07 -0.21 6.77 -51.93 -0.35 -0.56 16 32 H 0.11 -0.38 6.83 -51.93 -0.35 -0.73 16 33 H 0.33 0.47 8.23 -40.82 -0.34 0.14 16 34 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 37 H 0.08 -0.37 8.14 -51.93 -0.42 -0.80 16 38 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 39 H 0.07 -0.12 8.04 -51.93 -0.42 -0.54 16 40 H 0.40 -1.91 8.39 -40.82 -0.34 -2.25 16 41 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 42 H 0.15 -0.43 8.06 -52.49 -0.42 -0.85 16 43 H 0.14 -0.03 8.06 -52.49 -0.42 -0.46 16 44 H 0.14 0.02 8.06 -52.48 -0.42 -0.40 16 45 H 0.17 -0.26 8.06 -52.48 -0.42 -0.68 16 46 H 0.08 -0.41 6.98 -51.93 -0.36 -0.77 16 47 H 0.08 -0.29 7.58 -51.93 -0.39 -0.68 16 LS Contribution 381.48 15.07 5.75 5.75 Total: 0.00 -10.33 381.48 -9.41 -19.74 By element: Atomic # 1 Polarization: -4.21 SS G_CDS: -7.09 Total: -11.30 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.89 Total: -1.32 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -0.33 Total: -1.16 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.15 Total: -5.41 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -4.99 Total: -6.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -10.33 -9.41 -19.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354933544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.438 kcal (2) G-P(sol) polarization free energy of solvation -10.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds