Wall clock time and date at job start Tue Mar 31 2020 17:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47137 * 2 1 4 4 N 1.27940 * 120.00024 * 94.99985 * 3 2 1 5 5 Si 1.86802 * 120.00035 * 274.99659 * 3 2 1 6 6 H 1.48501 * 109.46861 * 60.00072 * 5 3 2 7 7 H 1.48498 * 109.47130 * 179.97438 * 5 3 2 8 8 H 1.48495 * 109.47202 * 300.00483 * 5 3 2 9 9 C 1.50703 * 109.46788 * 119.99804 * 2 1 3 10 10 O 1.21276 * 119.99967 * 257.03387 * 9 2 1 11 11 N 1.34777 * 119.99821 * 77.04448 * 9 2 1 12 12 C 1.47019 * 125.64779 * 175.55949 * 11 9 2 13 13 C 1.54372 * 107.29124 * 181.12171 * 12 11 9 14 14 C 1.55166 * 102.91551 * 22.13636 * 13 12 11 15 15 H 1.08999 * 111.00261 * 82.64260 * 14 13 12 16 16 C 1.52999 * 110.99940 * 206.45184 * 14 13 12 17 17 N 1.46503 * 109.47405 * 290.41974 * 16 14 13 18 18 C 1.34771 * 120.00090 * 180.02562 * 17 16 14 19 19 O 1.21783 * 120.00035 * 359.97438 * 18 17 16 20 20 C 1.41517 * 120.00122 * 180.02562 * 18 17 16 21 21 C 1.35620 * 120.00128 * 187.60326 * 20 18 17 22 22 C 1.41674 * 119.99556 * 32.80556 * 21 20 18 23 23 C 1.38286 * 126.25426 * 187.08400 * 22 21 20 24 24 C 1.39787 * 107.07534 * 180.02562 * 23 22 21 25 25 C 1.35494 * 107.90927 * 0.25735 * 24 23 22 26 26 N 1.35753 * 108.91555 * 359.57566 * 25 24 23 27 27 H 0.96999 * 125.69747 * 180.17266 * 26 25 24 28 28 C 1.47418 * 125.65100 * 355.59140 * 11 9 2 29 29 H 1.08999 * 109.47127 * 304.05630 * 1 2 3 30 30 H 1.09004 * 109.46848 * 64.04754 * 1 2 3 31 31 H 1.08999 * 109.47069 * 184.05168 * 1 2 3 32 32 H 1.09005 * 109.47146 * 239.99704 * 2 1 3 33 33 H 0.97007 * 120.00385 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.88109 * 300.50942 * 12 11 9 35 35 H 1.09000 * 109.88588 * 61.51497 * 12 11 9 36 36 H 1.08995 * 110.70679 * 263.79508 * 13 12 11 37 37 H 1.08997 * 110.75717 * 140.50048 * 13 12 11 38 38 H 1.09004 * 109.46489 * 170.42265 * 16 14 13 39 39 H 1.09001 * 109.47355 * 50.42271 * 16 14 13 40 40 H 0.97000 * 119.99885 * 359.97438 * 17 16 14 41 41 H 1.07999 * 119.99804 * 7.60539 * 20 18 17 42 42 H 1.07996 * 119.99973 * 212.80605 * 21 20 18 43 43 H 1.08001 * 126.45858 * 0.02562 * 23 22 21 44 44 H 1.08004 * 126.03954 * 180.02562 * 24 23 22 45 45 H 1.08005 * 125.54096 * 179.73649 * 25 24 23 46 46 H 1.09004 * 110.36417 * 36.99916 * 28 11 9 47 47 H 1.09002 * 110.37046 * 274.68312 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3366 1.9917 1.1038 5 14 2.2109 2.3484 -1.6116 6 1 0.8885 2.4354 -2.2817 7 1 2.7192 3.7172 -1.3412 8 1 3.1660 1.6301 -2.4930 9 6 2.0323 -0.7104 1.2305 10 8 2.4566 -0.0706 2.1694 11 7 2.0101 -2.0568 1.2876 12 6 2.5507 -2.8770 2.3814 13 6 2.3266 -4.3560 1.9998 14 6 2.1811 -4.2976 0.4560 15 1 3.1576 -4.2793 -0.0279 16 6 1.3385 -5.4658 -0.0598 17 7 2.0868 -6.7153 0.0987 18 6 1.5386 -7.8832 -0.2909 19 8 0.4209 -7.9000 -0.7743 20 6 2.2612 -9.0902 -0.1372 21 6 1.7785 -10.2417 -0.6668 22 6 1.0329 -10.2095 -1.8711 23 6 0.3680 -11.2748 -2.4499 24 6 -0.2298 -10.7986 -3.6204 25 6 0.0760 -9.4839 -3.7392 26 7 0.8382 -9.1118 -2.6793 27 1 1.1904 -8.2222 -2.5200 28 6 1.4405 -2.9509 0.2632 29 1 -0.3633 0.5755 0.8514 30 1 -0.3633 0.4498 -0.9241 31 1 -0.3633 -1.0251 0.0726 32 1 1.8934 -0.5139 -0.8900 33 1 2.6604 2.9062 1.1038 34 1 3.6168 -2.6826 2.4985 35 1 2.0281 -2.6478 3.3100 36 1 1.4150 -4.7385 2.4588 37 1 3.1865 -4.9627 2.2834 38 1 1.1094 -5.3108 -1.1142 39 1 0.4104 -5.5235 0.5090 40 1 2.9771 -6.7019 0.4835 41 1 3.1970 -9.0944 0.4019 42 1 1.9626 -11.1831 -0.1706 43 1 0.3196 -12.2845 -2.0695 44 1 -0.8264 -11.3772 -4.3100 45 1 -0.2381 -8.8366 -4.5447 46 1 1.6289 -2.5537 -0.7342 47 1 0.3703 -3.0800 0.4250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354933544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:09 Heat of formation + Delta-G solvation = 49.613266 kcal Electronic energy + Delta-G solvation = -28065.877936 eV Core-core repulsion = 24138.375907 eV Total energy + Delta-G solvation = -3927.502029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21938 -41.33031 -40.52978 -38.96081 -36.74844 -35.90655 -34.65964 -33.72045 -32.34251 -31.82590 -30.54765 -29.28176 -27.02096 -26.10023 -24.49076 -24.02103 -22.04188 -21.77944 -21.36484 -21.24728 -20.60032 -19.64392 -18.98640 -18.72557 -17.76415 -17.38729 -16.93591 -16.41668 -16.15623 -16.02419 -15.55724 -15.27107 -15.03757 -14.91421 -14.84451 -14.67770 -14.48709 -14.38870 -14.14632 -13.97934 -13.83793 -13.70423 -13.50608 -13.14258 -13.05302 -12.88212 -12.84689 -12.68961 -12.38355 -12.25194 -12.21765 -11.94894 -11.70340 -11.38106 -11.09510 -10.85077 -10.68664 -10.09449 -9.72469 -9.63019 -9.50920 -8.44226 -0.42689 0.89690 1.07359 1.45132 1.67386 1.69486 1.80243 1.84870 2.03540 2.05835 2.34298 2.47891 2.62656 3.29439 3.46536 3.50039 3.77565 3.95055 4.09913 4.14337 4.16657 4.19396 4.21853 4.28554 4.33552 4.37193 4.48830 4.53735 4.56833 4.68142 4.69463 4.72836 4.76632 4.84596 4.86879 4.92904 4.99810 5.03546 5.07264 5.14897 5.24423 5.27257 5.36760 5.40927 5.42740 5.48305 6.03167 6.19393 6.52489 6.60492 6.70361 7.01028 7.28549 7.30053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.025 4.025 4 N -0.624 5.624 5 Si 0.984 3.016 6 H -0.223 1.223 7 H -0.270 1.270 8 H -0.232 1.232 9 C 0.520 3.480 10 O -0.547 6.547 11 N -0.625 5.625 12 C 0.104 3.896 13 C -0.118 4.118 14 C -0.100 4.100 15 H 0.108 0.892 16 C 0.135 3.865 17 N -0.714 5.714 18 C 0.540 3.460 19 O -0.591 6.591 20 C -0.300 4.300 21 C 0.049 3.951 22 C -0.021 4.021 23 C -0.158 4.158 24 C -0.236 4.236 25 C 0.013 3.987 26 N -0.514 5.514 27 H 0.418 0.582 28 C 0.100 3.900 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.333 0.667 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.415 0.585 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.187 0.813 46 H 0.107 0.893 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -3.016 -5.593 6.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.273 4.273 4 N -0.236 5.236 5 Si 0.798 3.202 6 H -0.145 1.145 7 H -0.194 1.194 8 H -0.155 1.155 9 C 0.308 3.692 10 O -0.423 6.423 11 N -0.361 5.361 12 C -0.019 4.019 13 C -0.156 4.156 14 C -0.119 4.119 15 H 0.126 0.874 16 C 0.011 3.989 17 N -0.365 5.365 18 C 0.334 3.666 19 O -0.476 6.476 20 C -0.322 4.322 21 C 0.028 3.972 22 C -0.132 4.132 23 C -0.184 4.184 24 C -0.259 4.259 25 C -0.125 4.125 26 N -0.110 5.110 27 H 0.260 0.740 28 C -0.023 4.023 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.251 0.749 41 H 0.181 0.819 42 H 0.189 0.811 43 H 0.173 0.827 44 H 0.166 0.834 45 H 0.204 0.796 46 H 0.125 0.875 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.575 -2.193 -5.075 5.749 hybrid contribution 0.645 1.065 0.624 1.393 sum 2.220 -1.128 -4.451 5.100 Atomic orbital electron populations 1.21722 0.89813 1.04047 1.03870 1.20853 0.99342 0.92617 0.97492 1.30595 0.93990 0.99315 1.03361 1.68606 1.07435 1.14861 1.32719 0.85074 0.83189 0.77780 0.74164 1.14486 1.19409 1.15488 1.20748 0.78328 0.80515 0.89614 1.90792 1.46940 1.65224 1.39308 1.48654 1.59898 1.04842 1.22696 1.21916 0.98484 0.91209 0.90303 1.22723 1.04023 0.93558 0.95275 1.22501 1.00491 0.92948 0.95991 0.87401 1.21169 0.94335 0.81842 1.01567 1.45844 1.20583 1.05908 1.64198 1.17479 0.86452 0.84944 0.77706 1.90873 1.21585 1.87786 1.47386 1.22014 1.03940 0.92363 1.13892 1.21235 0.87429 1.00326 0.88199 1.18692 1.09936 0.87761 0.96799 1.21890 1.00219 0.99017 0.97255 1.21170 1.08170 0.95295 1.01314 1.22592 0.98219 0.97529 0.94149 1.42659 1.39054 1.11163 1.18139 0.74001 1.22536 0.98310 0.88524 0.92894 0.93823 0.88358 0.89861 0.83789 0.85014 0.92481 0.93371 0.90388 0.88155 0.90699 0.92181 0.74856 0.81904 0.81109 0.82697 0.83370 0.79559 0.87474 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.63 9.03 71.98 0.65 1.28 16 2 C -0.08 0.13 2.01 -12.28 -0.02 0.10 16 3 C -0.03 -0.04 4.82 88.68 0.43 0.39 16 4 N -0.62 -5.42 11.12 24.11 0.27 -5.15 16 5 Si 0.98 -3.87 29.38 68.60 2.02 -1.86 16 6 H -0.22 1.26 7.11 99.48 0.71 1.97 16 7 H -0.27 0.08 7.11 99.48 0.71 0.79 16 8 H -0.23 1.09 7.11 99.48 0.71 1.79 16 9 C 0.52 3.12 7.02 87.66 0.62 3.74 16 10 O -0.55 -9.21 14.64 -3.02 -0.04 -9.26 16 11 N -0.63 0.05 3.33 -811.73 -2.70 -2.65 16 12 C 0.10 -0.02 6.87 86.75 0.60 0.58 16 13 C -0.12 0.89 6.28 31.80 0.20 1.09 16 14 C -0.10 1.02 3.07 -9.40 -0.03 0.99 16 15 H 0.11 -1.29 8.14 -2.39 -0.02 -1.31 16 16 C 0.14 -1.03 5.12 86.38 0.44 -0.59 16 17 N -0.71 4.95 5.44 -472.21 -2.57 2.38 16 18 C 0.54 -0.09 6.34 85.05 0.54 0.45 16 19 O -0.59 -4.53 12.73 -4.61 -0.06 -4.59 16 20 C -0.30 0.94 9.72 22.47 0.22 1.16 16 21 C 0.05 -0.05 9.76 22.51 0.22 0.17 16 22 C -0.02 -0.09 5.94 39.08 0.23 0.14 16 23 C -0.16 -0.69 10.86 22.66 0.25 -0.45 16 24 C -0.24 -1.01 10.81 22.01 0.24 -0.77 16 25 C 0.01 0.04 11.90 83.45 0.99 1.03 16 26 N -0.51 -2.09 4.51 -187.33 -0.85 -2.94 16 27 H 0.42 1.09 6.16 -92.71 -0.57 0.52 16 28 C 0.10 -0.84 5.33 86.85 0.46 -0.38 16 29 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.10 -0.91 8.05 -2.39 -0.02 -0.93 16 31 H 0.08 -0.62 6.77 -2.39 -0.02 -0.64 16 32 H 0.14 -1.40 6.83 -2.38 -0.02 -1.41 16 33 H 0.33 1.84 8.23 -92.70 -0.76 1.07 16 34 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.05 0.18 8.14 -2.39 -0.02 0.17 16 36 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 37 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.06 -0.24 8.04 -2.39 -0.02 -0.26 16 40 H 0.41 -4.93 8.39 -92.71 -0.78 -5.71 16 41 H 0.16 -1.53 8.06 -2.91 -0.02 -1.56 16 42 H 0.17 -1.19 8.06 -2.91 -0.02 -1.21 16 43 H 0.16 0.02 8.06 -2.91 -0.02 0.00 16 44 H 0.15 0.16 8.06 -2.91 -0.02 0.13 16 45 H 0.19 -0.57 8.06 -2.91 -0.02 -0.60 16 46 H 0.11 -1.39 6.98 -2.38 -0.02 -1.41 16 47 H 0.08 -0.75 7.58 -2.39 -0.02 -0.77 16 Total: 0.00 -28.29 381.48 1.74 -26.55 By element: Atomic # 1 Polarization: -11.08 SS G_CDS: -0.35 Total: -11.43 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.03 Total: 8.94 kcal Atomic # 7 Polarization: -2.52 SS G_CDS: -5.85 Total: -8.36 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.10 Total: -13.84 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.02 Total: -1.86 kcal Total: -28.29 1.74 -26.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354933544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.161 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds