Wall clock time and date at job start Tue Mar 31 2020 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47617 * 2 1 4 4 N 1.27950 * 119.99640 * 265.00138 * 3 2 1 5 5 Si 1.86794 * 120.00302 * 84.99753 * 3 2 1 6 6 H 1.48497 * 109.47035 * 0.02562 * 5 3 2 7 7 H 1.48496 * 109.47025 * 120.00291 * 5 3 2 8 8 H 1.48499 * 109.47111 * 240.00163 * 5 3 2 9 9 C 1.50700 * 109.47132 * 239.99361 * 2 1 3 10 10 O 1.21284 * 119.99812 * 119.99759 * 9 2 1 11 11 N 1.34771 * 120.00454 * 300.00722 * 9 2 1 12 12 C 1.46500 * 120.00643 * 179.97438 * 11 9 2 13 13 C 1.53780 * 113.61853 * 205.00108 * 12 11 9 14 14 C 1.53778 * 87.07828 * 219.93511 * 13 12 11 15 15 N 1.46508 * 113.61299 * 139.98314 * 14 13 12 16 16 C 1.46499 * 119.99699 * 301.52292 * 15 14 13 17 17 C 1.34773 * 120.00179 * 121.52723 * 15 14 13 18 18 O 1.21790 * 120.00065 * 359.97438 * 17 15 14 19 19 C 1.41517 * 120.00259 * 179.97438 * 17 15 14 20 20 C 1.35610 * 120.00167 * 188.38546 * 19 17 15 21 21 C 1.41674 * 120.00201 * 32.33209 * 20 19 17 22 22 C 1.38279 * 126.25767 * 187.23626 * 21 20 19 23 23 C 1.39796 * 107.07647 * 179.97438 * 22 21 20 24 24 C 1.35499 * 107.91055 * 359.97438 * 23 22 21 25 25 N 1.35762 * 108.90816 * 359.97438 * 24 23 22 26 26 H 0.97008 * 125.68476 * 179.97438 * 25 24 23 27 27 C 1.53779 * 87.17510 * 25.38837 * 14 13 12 28 28 H 1.09000 * 109.47007 * 59.99995 * 1 2 3 29 29 H 1.08990 * 109.47613 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47255 * 300.00924 * 1 2 3 31 31 H 1.09000 * 109.47007 * 120.00005 * 2 1 3 32 32 H 0.97004 * 119.99563 * 179.97438 * 4 3 2 33 33 H 0.97006 * 119.99819 * 0.02562 * 11 9 2 34 34 H 1.08999 * 112.84748 * 336.19962 * 12 11 9 35 35 H 1.08994 * 113.61500 * 105.38620 * 13 12 11 36 36 H 1.09007 * 113.61192 * 334.48068 * 13 12 11 37 37 H 1.09003 * 113.61486 * 270.79363 * 14 13 12 38 38 H 1.09001 * 109.46992 * 270.00296 * 16 15 14 39 39 H 1.09002 * 109.47028 * 30.00267 * 16 15 14 40 40 H 1.08998 * 109.46661 * 150.00187 * 16 15 14 41 41 H 1.07997 * 119.99705 * 8.38442 * 19 17 15 42 42 H 1.07998 * 119.99913 * 212.32878 * 20 19 17 43 43 H 1.07999 * 126.46295 * 359.70727 * 22 21 20 44 44 H 1.07998 * 126.04248 * 180.02562 * 23 22 21 45 45 H 1.07998 * 125.54838 * 179.97438 * 24 23 22 46 46 H 1.09003 * 113.61282 * 89.16301 * 27 14 13 47 47 H 1.08996 * 113.61377 * 220.05603 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3367 1.9916 -1.1039 5 14 2.2108 2.3484 1.6115 6 1 1.7969 1.4713 2.7360 7 1 3.6277 2.7529 1.7955 8 1 1.3502 3.5583 1.5841 9 6 2.0323 -0.7105 -1.2304 10 8 2.7295 -0.1212 -2.0288 11 7 1.7066 -2.0008 -1.4437 12 6 2.1945 -2.6914 -2.6400 13 6 1.3115 -3.8740 -3.0719 14 6 2.6134 -4.6288 -3.3880 15 7 2.5811 -6.0418 -3.0022 16 6 2.3322 -6.4147 -1.6075 17 6 2.7804 -6.9985 -3.9303 18 8 2.9870 -6.6885 -5.0898 19 6 2.7498 -8.3634 -3.5575 20 6 3.1164 -9.3180 -4.4482 21 6 4.1161 -9.0403 -5.4129 22 6 4.4892 -9.8590 -6.4630 23 6 5.5045 -9.1967 -7.1592 24 6 5.7305 -8.0128 -6.5401 25 7 4.8924 -7.9050 -5.4775 26 1 4.8489 -7.1539 -4.8651 27 6 3.3005 -3.7230 -2.3526 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.6598 2.9063 -1.1039 33 1 1.1485 -2.4721 -0.8054 34 1 2.4376 -2.0080 -3.4537 35 1 0.7027 -3.6660 -3.9517 36 1 0.7396 -4.3133 -2.2544 37 1 2.9702 -4.4763 -4.4067 38 1 3.2805 -6.4790 -1.0738 39 1 1.7008 -5.6610 -1.1370 40 1 1.8302 -7.3816 -1.5741 41 1 2.4344 -8.6447 -2.5637 42 1 2.6463 -10.2899 -4.4222 43 1 4.0772 -10.8292 -6.6981 44 1 6.0174 -9.5634 -8.0360 45 1 6.4589 -7.2750 -6.8426 46 1 3.2735 -4.1209 -1.3381 47 1 4.2951 -3.3933 -2.6525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511936688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:16 Heat of formation + Delta-G solvation = 78.416118 kcal Electronic energy + Delta-G solvation = -28269.794813 eV Core-core repulsion = 24343.541769 eV Total energy + Delta-G solvation = -3926.253044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26601 -41.50517 -40.61722 -39.25921 -36.75624 -35.85567 -34.77980 -34.24110 -32.68694 -31.74287 -29.30477 -28.22556 -26.89571 -26.50581 -25.85013 -24.09280 -22.41628 -21.50617 -21.18830 -20.90351 -20.17674 -19.83901 -18.80415 -18.66282 -18.20621 -17.22033 -16.87573 -16.53524 -16.13353 -16.03202 -15.86177 -15.26951 -15.04897 -14.97531 -14.75392 -14.59012 -14.48462 -14.24901 -14.07085 -14.03095 -13.81561 -13.56506 -13.39585 -13.36648 -13.16857 -13.07178 -12.83620 -12.72047 -12.48666 -12.39540 -12.22560 -12.19281 -11.86712 -11.35608 -10.94371 -10.69946 -10.62337 -9.97252 -9.77493 -9.56497 -9.51020 -8.40418 -0.44439 0.87029 1.01246 1.34591 1.66906 1.72910 1.76565 1.85543 1.92919 2.08926 2.38312 2.49444 2.62298 3.32003 3.34492 3.50065 3.71377 3.78154 3.85984 3.87712 3.98920 4.04310 4.09486 4.12843 4.30882 4.35564 4.44845 4.48941 4.50094 4.53161 4.56154 4.58670 4.62934 4.65821 4.71189 4.79780 4.89353 4.95473 4.99671 5.09587 5.11226 5.12543 5.41923 5.45353 5.52602 5.58321 6.09340 6.26860 6.35743 6.57312 6.75803 6.99619 7.19887 7.43528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.018 4.018 4 N -0.575 5.575 5 Si 0.933 3.067 6 H -0.233 1.233 7 H -0.244 1.244 8 H -0.242 1.242 9 C 0.516 3.484 10 O -0.496 6.496 11 N -0.726 5.726 12 C 0.131 3.869 13 C -0.158 4.158 14 C 0.124 3.876 15 N -0.604 5.604 16 C 0.075 3.925 17 C 0.548 3.452 18 O -0.552 6.552 19 C -0.310 4.310 20 C 0.064 3.936 21 C -0.006 4.006 22 C -0.135 4.135 23 C -0.217 4.217 24 C 0.028 3.972 25 N -0.511 5.511 26 H 0.417 0.583 27 C -0.162 4.162 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.332 0.668 33 H 0.398 0.602 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.091 0.909 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -2.557 7.400 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.268 4.268 4 N -0.187 5.187 5 Si 0.748 3.252 6 H -0.155 1.155 7 H -0.167 1.167 8 H -0.165 1.165 9 C 0.301 3.699 10 O -0.367 6.367 11 N -0.379 5.379 12 C 0.025 3.975 13 C -0.198 4.198 14 C 0.019 3.981 15 N -0.335 5.335 16 C -0.068 4.068 17 C 0.344 3.656 18 O -0.434 6.434 19 C -0.331 4.331 20 C 0.044 3.956 21 C -0.117 4.117 22 C -0.161 4.161 23 C -0.241 4.241 24 C -0.111 4.111 25 N -0.107 5.107 26 H 0.259 0.741 27 C -0.202 4.202 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.232 0.768 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.141 0.859 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.109 0.891 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.660 -1.605 6.125 6.545 hybrid contribution -0.270 0.539 1.043 1.205 sum -1.930 -1.066 7.168 7.499 Atomic orbital electron populations 1.21696 0.91268 1.03110 1.03678 1.20656 0.98206 0.93398 0.98047 1.29822 0.95874 0.98730 1.02381 1.68428 1.05218 1.14130 1.30881 0.85692 0.82352 0.80679 0.76478 1.15482 1.16709 1.16541 1.20409 0.80624 0.81280 0.87616 1.90791 1.35611 1.64796 1.45490 1.45961 1.54558 1.12262 1.25074 1.22199 0.94293 0.91950 0.89051 1.23830 0.97666 0.95656 1.02610 1.22352 0.96582 0.78880 1.00250 1.47737 1.71272 1.05734 1.08742 1.21836 1.01493 1.01747 0.81724 1.17256 0.76738 0.86403 0.85200 1.90873 1.50592 1.83721 1.18203 1.21861 1.16971 0.92609 1.01685 1.20899 0.87553 0.99250 0.87929 1.18251 1.00409 0.90033 1.03011 1.21573 0.99403 1.00102 0.95042 1.20883 1.03372 0.96210 1.03611 1.22177 0.98310 1.00049 0.90530 1.42617 1.27785 1.16460 1.23791 0.74066 1.23972 0.99850 0.96272 1.00066 0.91403 0.91302 0.90936 0.87011 0.85092 0.76772 0.86369 0.90033 0.89160 0.85912 0.92294 0.90978 0.90343 0.84404 0.83508 0.83964 0.84264 0.81711 0.89084 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.44 9.02 37.15 0.33 0.77 16 2 C -0.08 0.12 2.65 -92.93 -0.25 -0.13 16 3 C -0.02 0.00 4.75 -13.90 -0.07 -0.07 16 4 N -0.57 -1.63 11.22 56.23 0.63 -1.00 16 5 Si 0.93 -1.45 29.29 -169.99 -4.98 -6.43 16 6 H -0.23 0.53 7.11 56.52 0.40 0.93 16 7 H -0.24 0.04 7.11 56.52 0.40 0.44 16 8 H -0.24 0.17 7.11 56.52 0.40 0.57 16 9 C 0.52 0.67 7.10 -10.99 -0.08 0.60 16 10 O -0.50 -2.96 13.92 5.55 0.08 -2.88 16 11 N -0.73 1.14 5.25 -52.93 -0.28 0.86 16 12 C 0.13 -0.10 4.24 -67.03 -0.28 -0.38 16 13 C -0.16 0.26 7.37 -25.92 -0.19 0.07 16 14 C 0.12 -0.06 4.21 -67.12 -0.28 -0.34 16 15 N -0.60 0.33 3.08 -176.44 -0.54 -0.21 16 16 C 0.07 -0.27 8.78 59.85 0.53 0.26 16 17 C 0.55 1.06 6.20 -15.01 -0.09 0.97 16 18 O -0.55 -2.89 12.20 5.11 0.06 -2.83 16 19 C -0.31 -0.05 9.02 -39.27 -0.35 -0.41 16 20 C 0.06 0.04 9.76 -39.21 -0.38 -0.35 16 21 C -0.01 -0.02 5.95 -83.91 -0.50 -0.52 16 22 C -0.14 -0.35 10.86 -38.98 -0.42 -0.77 16 23 C -0.22 -0.55 10.81 -39.98 -0.43 -0.99 16 24 C 0.03 0.06 11.90 -16.79 -0.20 -0.13 16 25 N -0.51 -1.53 4.51 -10.56 -0.05 -1.57 16 26 H 0.42 1.12 6.14 -40.82 -0.25 0.87 16 27 C -0.16 0.22 7.35 -25.83 -0.19 0.03 16 28 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.07 -0.34 7.56 -51.93 -0.39 -0.73 16 30 H 0.07 -0.32 7.94 -51.93 -0.41 -0.73 16 31 H 0.11 -0.48 7.85 -51.93 -0.41 -0.89 16 32 H 0.33 0.36 8.23 -40.82 -0.34 0.02 16 33 H 0.40 -1.80 8.15 -40.82 -0.33 -2.14 16 34 H 0.12 0.19 7.46 -51.93 -0.39 -0.20 16 35 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.09 -0.28 6.79 -51.92 -0.35 -0.63 16 37 H 0.12 0.18 7.21 -51.93 -0.37 -0.19 16 38 H 0.06 -0.23 8.14 -51.93 -0.42 -0.65 16 39 H 0.07 -0.35 6.33 -51.93 -0.33 -0.68 16 40 H 0.08 -0.34 5.99 -51.93 -0.31 -0.65 16 41 H 0.14 -0.34 6.02 -52.49 -0.32 -0.66 16 42 H 0.15 -0.35 8.06 -52.49 -0.42 -0.77 16 43 H 0.14 0.05 8.06 -52.49 -0.42 -0.37 16 44 H 0.14 0.12 8.06 -52.49 -0.42 -0.30 16 45 H 0.17 -0.06 8.06 -52.49 -0.42 -0.49 16 46 H 0.09 -0.22 6.81 -51.93 -0.35 -0.58 16 47 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 LS Contribution 378.07 15.07 5.70 5.70 Total: 0.00 -10.02 378.07 -8.98 -19.00 By element: Atomic # 1 Polarization: -2.52 SS G_CDS: -6.73 Total: -9.25 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.86 Total: -1.38 kcal Atomic # 7 Polarization: -1.68 SS G_CDS: -0.24 Total: -1.92 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: 0.14 Total: -5.71 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -4.98 Total: -6.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -10.02 -8.98 -19.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511936688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.415 kcal (2) G-P(sol) polarization free energy of solvation -10.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds