Wall clock time and date at job start Tue Mar 31 2020 17:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47617 * 2 1 4 4 N 1.27950 * 119.99640 * 265.00138 * 3 2 1 5 5 Si 1.86794 * 120.00302 * 84.99753 * 3 2 1 6 6 H 1.48497 * 109.47035 * 0.02562 * 5 3 2 7 7 H 1.48496 * 109.47025 * 120.00291 * 5 3 2 8 8 H 1.48499 * 109.47111 * 240.00163 * 5 3 2 9 9 C 1.50700 * 109.47132 * 239.99361 * 2 1 3 10 10 O 1.21284 * 119.99812 * 119.99759 * 9 2 1 11 11 N 1.34771 * 120.00454 * 300.00722 * 9 2 1 12 12 C 1.46500 * 120.00643 * 179.97438 * 11 9 2 13 13 C 1.53780 * 113.61853 * 205.00108 * 12 11 9 14 14 C 1.53778 * 87.07828 * 219.93511 * 13 12 11 15 15 N 1.46508 * 113.61299 * 139.98314 * 14 13 12 16 16 C 1.46499 * 119.99699 * 301.52292 * 15 14 13 17 17 C 1.34773 * 120.00179 * 121.52723 * 15 14 13 18 18 O 1.21790 * 120.00065 * 359.97438 * 17 15 14 19 19 C 1.41517 * 120.00259 * 179.97438 * 17 15 14 20 20 C 1.35610 * 120.00167 * 188.38546 * 19 17 15 21 21 C 1.41674 * 120.00201 * 32.33209 * 20 19 17 22 22 C 1.38279 * 126.25767 * 187.23626 * 21 20 19 23 23 C 1.39796 * 107.07647 * 179.97438 * 22 21 20 24 24 C 1.35499 * 107.91055 * 359.97438 * 23 22 21 25 25 N 1.35762 * 108.90816 * 359.97438 * 24 23 22 26 26 H 0.97008 * 125.68476 * 179.97438 * 25 24 23 27 27 C 1.53779 * 87.17510 * 25.38837 * 14 13 12 28 28 H 1.09000 * 109.47007 * 59.99995 * 1 2 3 29 29 H 1.08990 * 109.47613 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47255 * 300.00924 * 1 2 3 31 31 H 1.09000 * 109.47007 * 120.00005 * 2 1 3 32 32 H 0.97004 * 119.99563 * 179.97438 * 4 3 2 33 33 H 0.97006 * 119.99819 * 0.02562 * 11 9 2 34 34 H 1.08999 * 112.84748 * 336.19962 * 12 11 9 35 35 H 1.08994 * 113.61500 * 105.38620 * 13 12 11 36 36 H 1.09007 * 113.61192 * 334.48068 * 13 12 11 37 37 H 1.09003 * 113.61486 * 270.79363 * 14 13 12 38 38 H 1.09001 * 109.46992 * 270.00296 * 16 15 14 39 39 H 1.09002 * 109.47028 * 30.00267 * 16 15 14 40 40 H 1.08998 * 109.46661 * 150.00187 * 16 15 14 41 41 H 1.07997 * 119.99705 * 8.38442 * 19 17 15 42 42 H 1.07998 * 119.99913 * 212.32878 * 20 19 17 43 43 H 1.07999 * 126.46295 * 359.70727 * 22 21 20 44 44 H 1.07998 * 126.04248 * 180.02562 * 23 22 21 45 45 H 1.07998 * 125.54838 * 179.97438 * 24 23 22 46 46 H 1.09003 * 113.61282 * 89.16301 * 27 14 13 47 47 H 1.08996 * 113.61377 * 220.05603 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3367 1.9916 -1.1039 5 14 2.2108 2.3484 1.6115 6 1 1.7969 1.4713 2.7360 7 1 3.6277 2.7529 1.7955 8 1 1.3502 3.5583 1.5841 9 6 2.0323 -0.7105 -1.2304 10 8 2.7295 -0.1212 -2.0288 11 7 1.7066 -2.0008 -1.4437 12 6 2.1945 -2.6914 -2.6400 13 6 1.3115 -3.8740 -3.0719 14 6 2.6134 -4.6288 -3.3880 15 7 2.5811 -6.0418 -3.0022 16 6 2.3322 -6.4147 -1.6075 17 6 2.7804 -6.9985 -3.9303 18 8 2.9870 -6.6885 -5.0898 19 6 2.7498 -8.3634 -3.5575 20 6 3.1164 -9.3180 -4.4482 21 6 4.1161 -9.0403 -5.4129 22 6 4.4892 -9.8590 -6.4630 23 6 5.5045 -9.1967 -7.1592 24 6 5.7305 -8.0128 -6.5401 25 7 4.8924 -7.9050 -5.4775 26 1 4.8489 -7.1539 -4.8651 27 6 3.3005 -3.7230 -2.3526 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.6598 2.9063 -1.1039 33 1 1.1485 -2.4721 -0.8054 34 1 2.4376 -2.0080 -3.4537 35 1 0.7027 -3.6660 -3.9517 36 1 0.7396 -4.3133 -2.2544 37 1 2.9702 -4.4763 -4.4067 38 1 3.2805 -6.4790 -1.0738 39 1 1.7008 -5.6610 -1.1370 40 1 1.8302 -7.3816 -1.5741 41 1 2.4344 -8.6447 -2.5637 42 1 2.6463 -10.2899 -4.4222 43 1 4.0772 -10.8292 -6.6981 44 1 6.0174 -9.5634 -8.0360 45 1 6.4589 -7.2750 -6.8426 46 1 3.2735 -4.1209 -1.3381 47 1 4.2951 -3.3933 -2.6525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001511936688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:15 Heat of formation + Delta-G solvation = 78.693622 kcal Electronic energy + Delta-G solvation = -28269.782779 eV Core-core repulsion = 24343.541769 eV Total energy + Delta-G solvation = -3926.241010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34822 -41.53426 -40.68151 -39.31441 -36.76920 -35.89941 -34.82330 -34.24295 -32.60923 -31.87566 -29.37900 -28.03640 -26.84314 -26.45935 -25.76967 -24.10810 -22.46223 -21.58550 -21.30263 -20.91254 -20.20778 -19.81714 -18.81244 -18.65015 -18.23750 -17.22670 -16.88570 -16.51329 -16.12628 -16.02645 -15.87050 -15.28979 -15.10095 -15.03357 -14.71733 -14.56193 -14.46335 -14.18041 -14.03575 -13.95763 -13.76132 -13.54989 -13.29802 -13.27014 -13.14090 -13.04976 -12.71111 -12.67882 -12.38993 -12.33705 -12.12663 -12.09455 -11.86843 -11.37989 -11.05501 -10.76599 -10.67581 -9.98605 -9.86154 -9.60873 -9.51777 -8.49207 -0.47505 0.92380 1.10533 1.49968 1.60564 1.75857 1.80534 1.88483 1.96467 1.98654 2.40951 2.43681 2.54914 3.34262 3.42146 3.54256 3.75997 3.81586 3.97732 4.02130 4.07104 4.20046 4.26910 4.27986 4.31785 4.42789 4.46122 4.56681 4.58782 4.61276 4.64842 4.70281 4.77925 4.80415 4.92660 4.94579 4.96016 5.00057 5.08695 5.09763 5.15243 5.34233 5.35521 5.37065 5.55289 5.62658 5.99338 6.15166 6.38267 6.62352 6.67724 7.03756 7.14447 7.45222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.023 4.023 4 N -0.624 5.624 5 Si 0.982 3.018 6 H -0.205 1.205 7 H -0.269 1.269 8 H -0.258 1.258 9 C 0.509 3.491 10 O -0.552 6.552 11 N -0.708 5.708 12 C 0.129 3.871 13 C -0.141 4.141 14 C 0.119 3.881 15 N -0.597 5.597 16 C 0.064 3.936 17 C 0.536 3.464 18 O -0.595 6.595 19 C -0.302 4.302 20 C 0.052 3.948 21 C -0.022 4.022 22 C -0.155 4.155 23 C -0.233 4.233 24 C 0.008 3.992 25 N -0.517 5.517 26 H 0.415 0.585 27 C -0.147 4.147 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.332 0.668 33 H 0.417 0.583 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.170 0.830 42 H 0.177 0.823 43 H 0.160 0.840 44 H 0.150 0.850 45 H 0.182 0.818 46 H 0.113 0.887 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 -4.052 10.670 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.271 4.271 4 N -0.237 5.237 5 Si 0.797 3.203 6 H -0.126 1.126 7 H -0.194 1.194 8 H -0.182 1.182 9 C 0.295 3.705 10 O -0.428 6.428 11 N -0.362 5.362 12 C 0.023 3.977 13 C -0.181 4.181 14 C 0.014 3.986 15 N -0.327 5.327 16 C -0.077 4.077 17 C 0.333 3.667 18 O -0.480 6.480 19 C -0.323 4.323 20 C 0.031 3.969 21 C -0.132 4.132 22 C -0.180 4.180 23 C -0.256 4.256 24 C -0.130 4.130 25 N -0.113 5.113 26 H 0.257 0.743 27 C -0.187 4.187 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.187 0.813 42 H 0.194 0.806 43 H 0.177 0.823 44 H 0.168 0.832 45 H 0.200 0.800 46 H 0.132 0.868 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.285 -3.147 9.446 10.484 hybrid contribution 0.209 1.042 0.041 1.063 sum -3.076 -2.105 9.487 10.193 Atomic orbital electron populations 1.21741 0.89683 1.04697 1.03448 1.20926 0.99420 0.92364 0.97934 1.30524 0.93901 0.99629 1.03063 1.68531 1.07592 1.14689 1.32877 0.85007 0.80229 0.79727 0.75362 1.12606 1.19400 1.18160 1.21025 0.79768 0.81738 0.87930 1.90778 1.38299 1.66153 1.47534 1.45800 1.54012 1.11563 1.24834 1.21996 0.95254 0.91712 0.88786 1.23744 0.96901 0.94504 1.02910 1.22212 0.97632 0.79553 0.99202 1.47806 1.70050 1.05053 1.09778 1.22144 1.02637 1.03206 0.79712 1.17677 0.76533 0.87543 0.84975 1.90856 1.52623 1.84395 1.20151 1.22119 1.16028 0.91431 1.02741 1.21296 0.87341 1.00883 0.87338 1.18759 1.00973 0.89884 1.03620 1.21901 0.99797 1.01045 0.95298 1.21171 1.03784 0.96512 1.04165 1.22573 0.98944 1.00722 0.90728 1.42708 1.28053 1.16565 1.23948 0.74321 1.23885 0.98607 0.95408 1.00781 0.93853 0.88835 0.88959 0.83167 0.85144 0.74512 0.89620 0.91236 0.86488 0.88863 0.91394 0.88911 0.88953 0.81328 0.80586 0.82278 0.83193 0.80041 0.86829 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 1.12 9.02 71.98 0.65 1.77 16 2 C -0.08 0.35 2.65 -12.29 -0.03 0.32 16 3 C -0.02 -0.01 4.75 88.67 0.42 0.41 16 4 N -0.62 -4.86 11.22 24.11 0.27 -4.59 16 5 Si 0.98 -4.00 29.29 68.60 2.01 -1.99 16 6 H -0.21 1.70 7.11 99.48 0.71 2.41 16 7 H -0.27 0.00 7.11 99.48 0.71 0.70 16 8 H -0.26 0.44 7.11 99.48 0.71 1.14 16 9 C 0.51 1.50 7.10 87.66 0.62 2.12 16 10 O -0.55 -7.92 13.92 -3.04 -0.04 -7.96 16 11 N -0.71 2.76 5.25 -439.78 -2.31 0.45 16 12 C 0.13 -0.09 4.24 45.57 0.19 0.11 16 13 C -0.14 0.50 7.37 31.12 0.23 0.73 16 14 C 0.12 -0.01 4.21 45.51 0.19 0.18 16 15 N -0.60 1.01 3.08 -830.31 -2.56 -1.55 16 16 C 0.06 -0.63 8.78 127.77 1.12 0.49 16 17 C 0.54 2.22 6.20 85.05 0.53 2.74 16 18 O -0.59 -7.37 12.20 -4.64 -0.06 -7.43 16 19 C -0.30 0.21 9.02 22.47 0.20 0.41 16 20 C 0.05 0.04 9.76 22.51 0.22 0.26 16 21 C -0.02 -0.14 5.95 39.08 0.23 0.09 16 22 C -0.16 -0.95 10.86 22.66 0.25 -0.70 16 23 C -0.23 -1.53 10.81 22.01 0.24 -1.29 16 24 C 0.01 0.06 11.90 83.45 0.99 1.05 16 25 N -0.52 -4.01 4.51 -187.33 -0.84 -4.85 16 26 H 0.41 3.13 6.14 -92.70 -0.57 2.56 16 27 C -0.15 0.36 7.35 31.18 0.23 0.59 16 28 H 0.04 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.09 -1.22 7.56 -2.39 -0.02 -1.24 16 30 H 0.09 -1.08 7.94 -2.39 -0.02 -1.10 16 31 H 0.15 -1.80 7.85 -2.39 -0.02 -1.82 16 32 H 0.33 1.63 8.23 -92.71 -0.76 0.87 16 33 H 0.42 -4.91 8.15 -92.70 -0.76 -5.67 16 34 H 0.09 0.56 7.46 -2.39 -0.02 0.54 16 35 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.12 -1.04 6.79 -2.38 -0.02 -1.05 16 37 H 0.09 0.57 7.21 -2.39 -0.02 0.55 16 38 H 0.07 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.09 -1.27 6.33 -2.39 -0.02 -1.28 16 40 H 0.09 -1.12 5.99 -2.39 -0.01 -1.13 16 41 H 0.17 -1.30 6.02 -2.91 -0.02 -1.32 16 42 H 0.18 -1.09 8.06 -2.91 -0.02 -1.12 16 43 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 44 H 0.15 0.45 8.06 -2.91 -0.02 0.43 16 45 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 46 H 0.11 -0.79 6.81 -2.39 -0.02 -0.81 16 47 H 0.06 0.08 8.14 -2.39 -0.02 0.07 16 Total: 0.00 -28.96 378.07 2.44 -26.52 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: -0.31 Total: -7.86 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.28 Total: 9.26 kcal Atomic # 7 Polarization: -5.10 SS G_CDS: -5.44 Total: -10.54 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.10 Total: -15.39 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.01 Total: -1.99 kcal Total: -28.96 2.44 -26.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511936688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.215 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds