Wall clock time and date at job start Tue Mar 31 2020 18:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46851 * 2 1 4 4 N 1.27939 * 120.00734 * 265.00479 * 3 2 1 5 5 Si 1.86805 * 119.99764 * 85.00821 * 3 2 1 6 6 H 1.48503 * 109.47226 * 59.99225 * 5 3 2 7 7 H 1.48498 * 109.47485 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.46855 * 299.99992 * 5 3 2 9 9 C 1.50702 * 109.46897 * 240.00799 * 2 1 3 10 10 O 1.21279 * 120.00128 * 119.99677 * 9 2 1 11 11 N 1.34779 * 120.00046 * 299.99705 * 9 2 1 12 12 C 1.46501 * 120.00237 * 180.02562 * 11 9 2 13 13 C 1.53000 * 110.88330 * 56.11802 * 12 11 9 14 14 C 1.55152 * 111.00366 * 180.02562 * 12 11 9 15 15 C 1.54324 * 102.94499 * 82.57083 * 14 12 11 16 16 N 1.47027 * 107.27077 * 22.19392 * 15 14 12 17 17 C 1.34776 * 125.64966 * 181.02644 * 16 15 14 18 18 O 1.21776 * 119.99817 * 180.02562 * 17 16 15 19 19 C 1.41512 * 119.99941 * 0.02562 * 17 16 15 20 20 C 1.35614 * 119.99997 * 188.48599 * 19 17 16 21 21 C 1.41670 * 120.00167 * 32.57087 * 20 19 17 22 22 C 1.38279 * 126.26253 * 186.84915 * 21 20 19 23 23 C 1.39784 * 107.07906 * 179.84683 * 22 21 20 24 24 C 1.35499 * 107.91028 * 0.41092 * 23 22 21 25 25 N 1.35759 * 108.91063 * 359.74519 * 24 23 22 26 26 H 0.96999 * 125.68733 * 180.02562 * 25 24 23 27 27 C 1.47427 * 108.70163 * 1.28333 * 16 15 14 28 28 H 1.08999 * 109.47403 * 59.99441 * 1 2 3 29 29 H 1.08997 * 109.46468 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46231 * 299.99335 * 1 2 3 31 31 H 1.08999 * 109.47403 * 120.00559 * 2 1 3 32 32 H 0.96997 * 120.00114 * 180.02562 * 4 3 2 33 33 H 0.97002 * 119.99767 * 0.02562 * 11 9 2 34 34 H 1.09008 * 109.46598 * 183.88555 * 13 12 11 35 35 H 1.09002 * 109.47362 * 303.87993 * 13 12 11 36 36 H 1.08993 * 109.47053 * 63.88701 * 13 12 11 37 37 H 1.08997 * 110.72005 * 324.20660 * 14 12 11 38 38 H 1.09002 * 110.71786 * 200.93368 * 14 12 11 39 39 H 1.09003 * 109.88330 * 262.77739 * 15 14 12 40 40 H 1.08998 * 109.88347 * 141.60732 * 15 14 12 41 41 H 1.08008 * 120.00273 * 8.48707 * 19 17 16 42 42 H 1.08007 * 120.00244 * 212.84510 * 20 19 17 43 43 H 1.08009 * 126.46060 * 359.96150 * 22 21 20 44 44 H 1.08005 * 126.04267 * 180.19095 * 23 22 21 45 45 H 1.08002 * 125.54596 * 179.75584 * 24 23 22 46 46 H 1.09000 * 110.36407 * 94.48222 * 27 16 15 47 47 H 1.08998 * 110.37047 * 216.80942 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3365 1.9919 -1.1037 5 14 2.2109 2.3483 1.6117 6 1 3.1661 1.6299 2.4930 7 1 2.7203 3.7168 1.3416 8 1 0.8886 2.4352 2.2819 9 6 2.0323 -0.7103 -1.2306 10 8 2.7295 -0.1208 -2.0289 11 7 1.7068 -2.0006 -1.4440 12 6 2.1955 -2.6913 -2.6400 13 6 3.7220 -2.6269 -2.7215 14 6 1.6975 -4.1602 -2.6764 15 6 0.2759 -4.0289 -3.2626 16 7 0.2235 -2.7580 -4.0000 17 6 -0.8545 -2.2665 -4.6425 18 8 -0.7825 -1.1986 -5.2235 19 6 -2.0699 -2.9912 -4.6419 20 6 -3.1003 -2.5879 -5.4259 21 6 -2.8409 -1.9671 -6.6727 22 6 -3.7782 -1.3897 -7.5095 23 6 -3.0882 -0.8983 -8.6215 24 6 -1.7740 -1.1839 -8.4562 25 7 -1.6102 -1.8336 -7.2754 26 1 -0.7667 -2.1505 -6.9163 27 6 1.5473 -2.1133 -3.9255 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.6602 2.9063 -1.1036 33 1 1.1488 -2.4720 -0.8057 34 1 4.0558 -3.0861 -3.6521 35 1 4.0438 -1.5859 -2.6942 36 1 4.1538 -3.1630 -1.8764 37 1 1.6629 -4.5807 -1.6714 38 1 2.3286 -4.7654 -3.3273 39 1 -0.4580 -4.0204 -2.4567 40 1 0.0761 -4.8590 -3.9401 41 1 -2.1770 -3.8657 -4.0170 42 1 -4.1186 -2.7358 -5.0979 43 1 -4.8424 -1.3281 -7.3358 44 1 -3.5258 -0.3852 -9.4652 45 1 -0.9852 -0.9351 -9.1506 46 1 2.1435 -2.3688 -4.8015 47 1 1.4385 -1.0320 -3.8418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536893387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:32 Heat of formation + Delta-G solvation = 55.930472 kcal Electronic energy + Delta-G solvation = -29687.440966 eV Core-core repulsion = 25760.212871 eV Total energy + Delta-G solvation = -3927.228094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.19682 -41.58671 -40.36866 -38.79131 -36.66585 -35.20610 -34.63721 -33.67226 -31.86063 -31.69685 -30.67986 -29.47889 -27.52493 -26.11387 -24.92945 -23.63024 -23.24427 -21.40128 -21.14348 -20.78550 -20.32477 -19.92380 -18.86079 -18.55332 -17.67001 -17.23626 -16.80864 -16.62301 -16.03267 -15.82030 -15.39051 -15.08621 -14.98301 -14.87140 -14.81775 -14.53452 -14.36175 -14.30019 -14.15202 -13.94455 -13.66270 -13.44316 -13.34170 -13.19702 -13.09512 -13.02337 -12.80348 -12.76092 -12.63974 -12.40189 -12.34622 -12.30181 -11.88493 -11.30986 -10.92195 -10.63377 -10.53357 -10.06988 -9.69879 -9.51015 -9.43177 -8.36180 -0.40173 0.91214 1.04821 1.36049 1.71399 1.78318 1.79169 1.88883 2.06931 2.14527 2.24302 2.54248 2.66984 3.16393 3.37399 3.40940 3.73200 3.88122 3.98755 4.02362 4.07892 4.12668 4.13252 4.29656 4.38060 4.42064 4.49504 4.54994 4.56265 4.56938 4.63685 4.67070 4.71491 4.74799 4.77205 4.83479 4.97382 5.00239 5.07255 5.12599 5.15714 5.30746 5.37625 5.47888 5.52215 5.62432 6.13120 6.30586 6.54036 6.60040 6.79236 7.04577 7.28204 7.46612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.018 4.018 4 N -0.573 5.573 5 Si 0.935 3.065 6 H -0.238 1.238 7 H -0.248 1.248 8 H -0.236 1.236 9 C 0.519 3.481 10 O -0.489 6.489 11 N -0.724 5.724 12 C 0.166 3.834 13 C -0.158 4.158 14 C -0.134 4.134 15 C 0.100 3.900 16 N -0.616 5.616 17 C 0.562 3.438 18 O -0.548 6.548 19 C -0.301 4.301 20 C 0.061 3.939 21 C -0.005 4.005 22 C -0.137 4.137 23 C -0.217 4.217 24 C 0.028 3.972 25 N -0.511 5.511 26 H 0.417 0.583 27 C 0.101 3.899 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.333 0.667 33 H 0.398 0.602 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.134 0.866 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.074 0.926 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -6.140 5.015 7.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.269 4.269 4 N -0.185 5.185 5 Si 0.750 3.250 6 H -0.161 1.161 7 H -0.171 1.171 8 H -0.159 1.159 9 C 0.304 3.696 10 O -0.361 6.361 11 N -0.378 5.378 12 C 0.079 3.921 13 C -0.217 4.217 14 C -0.172 4.172 15 C -0.023 4.023 16 N -0.349 5.349 17 C 0.357 3.643 18 O -0.430 6.430 19 C -0.323 4.323 20 C 0.041 3.959 21 C -0.116 4.116 22 C -0.162 4.162 23 C -0.241 4.241 24 C -0.111 4.111 25 N -0.107 5.107 26 H 0.259 0.741 27 C -0.023 4.023 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.092 0.908 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.234 -5.010 3.931 6.373 hybrid contribution 0.231 -0.011 0.942 0.970 sum -0.003 -5.021 4.874 6.997 Atomic orbital electron populations 1.21698 0.91331 1.02984 1.03686 1.20620 0.98131 0.93432 0.98021 1.29795 0.96032 0.98689 1.02356 1.68413 1.05016 1.14215 1.30847 0.85743 0.82761 0.79838 0.76609 1.16086 1.17070 1.15887 1.20318 0.80623 0.81069 0.87581 1.90746 1.35437 1.64543 1.45337 1.45954 1.54822 1.12341 1.24708 1.21330 0.94691 0.91066 0.85002 1.22077 0.92272 1.05101 1.02211 1.23010 0.95700 0.95559 1.02954 1.22059 0.97649 0.86563 0.96072 1.48430 1.11063 1.21782 1.53671 1.16872 0.82685 0.86023 0.78677 1.90903 1.84052 1.22887 1.45177 1.21732 0.95109 1.04669 1.10763 1.20876 0.99327 0.87349 0.88395 1.18235 0.85255 1.11627 0.96444 1.21557 0.98621 1.00991 0.95062 1.20874 0.92994 1.08785 1.01422 1.22168 0.98717 1.00042 0.90159 1.42606 1.09055 1.42897 1.16096 0.74099 1.22670 0.82835 1.00181 0.96614 0.91511 0.91482 0.90906 0.87087 0.85031 0.76761 0.91516 0.89422 0.91963 0.89048 0.88667 0.91131 0.90893 0.84852 0.83499 0.83981 0.84277 0.81736 0.90833 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.25 9.02 37.16 0.34 0.58 16 2 C -0.08 0.06 2.65 -92.92 -0.25 -0.19 16 3 C -0.02 -0.01 4.75 -13.90 -0.07 -0.08 16 4 N -0.57 -1.98 11.22 56.23 0.63 -1.35 16 5 Si 0.93 -0.93 29.29 -169.99 -4.98 -5.91 16 6 H -0.24 0.18 7.11 56.52 0.40 0.58 16 7 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 8 H -0.24 0.25 7.11 56.52 0.40 0.65 16 9 C 0.52 0.82 6.48 -10.98 -0.07 0.75 16 10 O -0.49 -2.68 11.16 5.56 0.06 -2.62 16 11 N -0.72 0.87 5.08 -45.51 -0.23 0.64 16 12 C 0.17 -0.16 0.82 -129.55 -0.11 -0.26 16 13 C -0.16 0.05 8.59 37.16 0.32 0.37 16 14 C -0.13 0.50 5.97 -24.90 -0.15 0.35 16 15 C 0.10 -0.28 6.01 -3.06 -0.02 -0.29 16 16 N -0.62 -0.52 3.33 -173.81 -0.58 -1.09 16 17 C 0.56 1.81 6.36 -15.01 -0.10 1.71 16 18 O -0.55 -3.87 13.03 5.12 0.07 -3.80 16 19 C -0.30 -0.29 9.27 -39.27 -0.36 -0.65 16 20 C 0.06 0.07 9.76 -39.21 -0.38 -0.31 16 21 C 0.00 -0.02 5.94 -83.91 -0.50 -0.52 16 22 C -0.14 -0.42 10.86 -38.99 -0.42 -0.85 16 23 C -0.22 -0.68 10.81 -39.98 -0.43 -1.11 16 24 C 0.03 0.08 11.90 -16.79 -0.20 -0.12 16 25 N -0.51 -1.95 4.52 -10.56 -0.05 -2.00 16 26 H 0.42 1.55 6.16 -40.82 -0.25 1.29 16 27 C 0.10 0.18 5.85 -2.41 -0.01 0.17 16 28 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.07 -0.23 7.56 -51.93 -0.39 -0.63 16 30 H 0.07 -0.22 7.94 -51.93 -0.41 -0.63 16 31 H 0.11 -0.42 7.85 -51.93 -0.41 -0.83 16 32 H 0.33 0.64 8.23 -40.82 -0.34 0.30 16 33 H 0.40 -1.54 7.93 -40.82 -0.32 -1.86 16 34 H 0.07 -0.08 8.07 -51.92 -0.42 -0.50 16 35 H 0.09 0.24 5.92 -51.93 -0.31 -0.06 16 36 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 37 H 0.09 -0.49 8.09 -51.93 -0.42 -0.91 16 38 H 0.09 -0.40 8.04 -51.93 -0.42 -0.82 16 39 H 0.07 -0.27 8.07 -51.93 -0.42 -0.69 16 40 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 41 H 0.13 -0.22 7.25 -52.48 -0.38 -0.60 16 42 H 0.15 -0.27 8.06 -52.48 -0.42 -0.70 16 43 H 0.14 0.11 8.06 -52.48 -0.42 -0.31 16 44 H 0.14 0.19 8.06 -52.48 -0.42 -0.23 16 45 H 0.17 0.05 8.06 -52.49 -0.42 -0.37 16 46 H 0.07 0.11 7.99 -51.93 -0.41 -0.30 16 47 H 0.09 0.54 6.78 -51.93 -0.35 0.19 16 LS Contribution 376.53 15.07 5.67 5.67 Total: 0.00 -9.67 376.53 -8.83 -18.49 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -7.01 Total: -7.60 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.41 Total: -0.44 kcal Atomic # 7 Polarization: -3.58 SS G_CDS: -0.23 Total: -3.80 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: 0.13 Total: -6.42 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -4.98 Total: -5.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -9.67 -8.83 -18.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536893387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.425 kcal (2) G-P(sol) polarization free energy of solvation -9.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds