Wall clock time and date at job start Tue Mar 31 2020 18:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46851 * 2 1 4 4 N 1.27939 * 120.00734 * 265.00479 * 3 2 1 5 5 Si 1.86805 * 119.99764 * 85.00821 * 3 2 1 6 6 H 1.48503 * 109.47226 * 59.99225 * 5 3 2 7 7 H 1.48498 * 109.47485 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.46855 * 299.99992 * 5 3 2 9 9 C 1.50702 * 109.46897 * 240.00799 * 2 1 3 10 10 O 1.21279 * 120.00128 * 119.99677 * 9 2 1 11 11 N 1.34779 * 120.00046 * 299.99705 * 9 2 1 12 12 C 1.46501 * 120.00237 * 180.02562 * 11 9 2 13 13 C 1.53000 * 110.88330 * 56.11802 * 12 11 9 14 14 C 1.55152 * 111.00366 * 180.02562 * 12 11 9 15 15 C 1.54324 * 102.94499 * 82.57083 * 14 12 11 16 16 N 1.47027 * 107.27077 * 22.19392 * 15 14 12 17 17 C 1.34776 * 125.64966 * 181.02644 * 16 15 14 18 18 O 1.21776 * 119.99817 * 180.02562 * 17 16 15 19 19 C 1.41512 * 119.99941 * 0.02562 * 17 16 15 20 20 C 1.35614 * 119.99997 * 188.48599 * 19 17 16 21 21 C 1.41670 * 120.00167 * 32.57087 * 20 19 17 22 22 C 1.38279 * 126.26253 * 186.84915 * 21 20 19 23 23 C 1.39784 * 107.07906 * 179.84683 * 22 21 20 24 24 C 1.35499 * 107.91028 * 0.41092 * 23 22 21 25 25 N 1.35759 * 108.91063 * 359.74519 * 24 23 22 26 26 H 0.96999 * 125.68733 * 180.02562 * 25 24 23 27 27 C 1.47427 * 108.70163 * 1.28333 * 16 15 14 28 28 H 1.08999 * 109.47403 * 59.99441 * 1 2 3 29 29 H 1.08997 * 109.46468 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46231 * 299.99335 * 1 2 3 31 31 H 1.08999 * 109.47403 * 120.00559 * 2 1 3 32 32 H 0.96997 * 120.00114 * 180.02562 * 4 3 2 33 33 H 0.97002 * 119.99767 * 0.02562 * 11 9 2 34 34 H 1.09008 * 109.46598 * 183.88555 * 13 12 11 35 35 H 1.09002 * 109.47362 * 303.87993 * 13 12 11 36 36 H 1.08993 * 109.47053 * 63.88701 * 13 12 11 37 37 H 1.08997 * 110.72005 * 324.20660 * 14 12 11 38 38 H 1.09002 * 110.71786 * 200.93368 * 14 12 11 39 39 H 1.09003 * 109.88330 * 262.77739 * 15 14 12 40 40 H 1.08998 * 109.88347 * 141.60732 * 15 14 12 41 41 H 1.08008 * 120.00273 * 8.48707 * 19 17 16 42 42 H 1.08007 * 120.00244 * 212.84510 * 20 19 17 43 43 H 1.08009 * 126.46060 * 359.96150 * 22 21 20 44 44 H 1.08005 * 126.04267 * 180.19095 * 23 22 21 45 45 H 1.08002 * 125.54596 * 179.75584 * 24 23 22 46 46 H 1.09000 * 110.36407 * 94.48222 * 27 16 15 47 47 H 1.08998 * 110.37047 * 216.80942 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3365 1.9919 -1.1037 5 14 2.2109 2.3483 1.6117 6 1 3.1661 1.6299 2.4930 7 1 2.7203 3.7168 1.3416 8 1 0.8886 2.4352 2.2819 9 6 2.0323 -0.7103 -1.2306 10 8 2.7295 -0.1208 -2.0289 11 7 1.7068 -2.0006 -1.4440 12 6 2.1955 -2.6913 -2.6400 13 6 3.7220 -2.6269 -2.7215 14 6 1.6975 -4.1602 -2.6764 15 6 0.2759 -4.0289 -3.2626 16 7 0.2235 -2.7580 -4.0000 17 6 -0.8545 -2.2665 -4.6425 18 8 -0.7825 -1.1986 -5.2235 19 6 -2.0699 -2.9912 -4.6419 20 6 -3.1003 -2.5879 -5.4259 21 6 -2.8409 -1.9671 -6.6727 22 6 -3.7782 -1.3897 -7.5095 23 6 -3.0882 -0.8983 -8.6215 24 6 -1.7740 -1.1839 -8.4562 25 7 -1.6102 -1.8336 -7.2754 26 1 -0.7667 -2.1505 -6.9163 27 6 1.5473 -2.1133 -3.9255 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.6602 2.9063 -1.1036 33 1 1.1488 -2.4720 -0.8057 34 1 4.0558 -3.0861 -3.6521 35 1 4.0438 -1.5859 -2.6942 36 1 4.1538 -3.1630 -1.8764 37 1 1.6629 -4.5807 -1.6714 38 1 2.3286 -4.7654 -3.3273 39 1 -0.4580 -4.0204 -2.4567 40 1 0.0761 -4.8590 -3.9401 41 1 -2.1770 -3.8657 -4.0170 42 1 -4.1186 -2.7358 -5.0979 43 1 -4.8424 -1.3281 -7.3358 44 1 -3.5258 -0.3852 -9.4652 45 1 -0.9852 -0.9351 -9.1506 46 1 2.1435 -2.3688 -4.8015 47 1 1.4385 -1.0320 -3.8418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536893387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:32 Heat of formation + Delta-G solvation = 55.902483 kcal Electronic energy + Delta-G solvation = -29687.442180 eV Core-core repulsion = 25760.212871 eV Total energy + Delta-G solvation = -3927.229308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34633 -41.64425 -40.50592 -38.87836 -36.74316 -35.31065 -34.74821 -33.70323 -31.91956 -31.80812 -30.60302 -29.61505 -27.62928 -26.06144 -24.93654 -23.68893 -23.21870 -21.55623 -21.31619 -20.80404 -20.39353 -20.01394 -18.92773 -18.59314 -17.81810 -17.24947 -16.80644 -16.70755 -16.05673 -15.94231 -15.44945 -15.17196 -15.07640 -14.88907 -14.78292 -14.57857 -14.40944 -14.33212 -14.19957 -13.97097 -13.70263 -13.56210 -13.35363 -13.19977 -13.16100 -13.02678 -12.92123 -12.66673 -12.47027 -12.36318 -12.27993 -12.24969 -11.82881 -11.35804 -11.15400 -10.76446 -10.61477 -10.13386 -9.87021 -9.62878 -9.50227 -8.51426 -0.50232 0.91461 1.07789 1.43607 1.58667 1.76518 1.80404 1.86140 1.95130 2.00537 2.29034 2.39032 2.52316 3.24762 3.39710 3.51400 3.88242 3.95303 4.01999 4.07189 4.15220 4.22803 4.23621 4.25069 4.29916 4.40603 4.44912 4.53550 4.61720 4.66069 4.70988 4.73041 4.75938 4.81008 4.87676 4.92032 5.00598 5.03655 5.05264 5.06871 5.24313 5.25280 5.31684 5.32794 5.42085 5.64713 5.97480 6.13012 6.47082 6.58517 6.67883 7.01667 7.11349 7.46429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.024 4.024 4 N -0.624 5.624 5 Si 0.984 3.016 6 H -0.233 1.233 7 H -0.273 1.273 8 H -0.225 1.225 9 C 0.509 3.491 10 O -0.537 6.537 11 N -0.710 5.710 12 C 0.169 3.831 13 C -0.153 4.153 14 C -0.120 4.120 15 C 0.092 3.908 16 N -0.611 5.611 17 C 0.550 3.450 18 O -0.599 6.599 19 C -0.293 4.293 20 C 0.052 3.948 21 C -0.022 4.022 22 C -0.153 4.153 23 C -0.232 4.232 24 C 0.007 3.993 25 N -0.519 5.519 26 H 0.413 0.587 27 C 0.102 3.898 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.331 0.669 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.167 0.833 42 H 0.180 0.820 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.182 0.818 46 H 0.067 0.933 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -8.953 7.673 11.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.272 4.272 4 N -0.237 5.237 5 Si 0.799 3.201 6 H -0.155 1.155 7 H -0.198 1.198 8 H -0.148 1.148 9 C 0.295 3.705 10 O -0.411 6.411 11 N -0.365 5.365 12 C 0.081 3.919 13 C -0.212 4.212 14 C -0.158 4.158 15 C -0.029 4.029 16 N -0.343 5.343 17 C 0.347 3.653 18 O -0.485 6.485 19 C -0.315 4.315 20 C 0.032 3.968 21 C -0.133 4.133 22 C -0.179 4.179 23 C -0.255 4.255 24 C -0.131 4.131 25 N -0.114 5.114 26 H 0.255 0.745 27 C -0.022 4.022 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.252 0.748 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.184 0.816 42 H 0.197 0.803 43 H 0.179 0.821 44 H 0.170 0.830 45 H 0.199 0.801 46 H 0.085 0.915 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.341 -7.902 6.624 10.398 hybrid contribution 0.621 0.870 0.104 1.074 sum -0.719 -7.031 6.728 9.758 Atomic orbital electron populations 1.21694 0.90332 1.04293 1.02863 1.20889 0.98859 0.92654 0.98369 1.30529 0.93951 0.99538 1.03157 1.68528 1.07525 1.14687 1.32913 0.85064 0.82948 0.77696 0.74390 1.15523 1.19750 1.14757 1.20862 0.80016 0.81725 0.87862 1.90743 1.37649 1.65734 1.47003 1.45837 1.54348 1.11638 1.24706 1.21300 0.94045 0.92888 0.83659 1.22003 0.92902 1.03022 1.03237 1.23040 0.94836 0.93027 1.04905 1.22393 0.98941 0.84899 0.96692 1.48495 1.09947 1.22766 1.53065 1.17375 0.83820 0.85759 0.78381 1.90880 1.84965 1.25246 1.47395 1.21934 0.93565 1.04996 1.10980 1.21311 1.01068 0.86806 0.87604 1.18770 0.85123 1.11789 0.97574 1.21905 0.99678 1.01206 0.95092 1.21178 0.93227 1.09047 1.02090 1.22580 0.99520 1.00439 0.90550 1.42706 1.09194 1.43134 1.16377 0.74520 1.22536 0.83858 0.97558 0.98281 0.94977 0.89134 0.88982 0.83150 0.85221 0.74785 0.90840 0.92987 0.90424 0.86019 0.87652 0.88972 0.89355 0.81566 0.80276 0.82072 0.83046 0.80110 0.91469 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.56 9.02 71.98 0.65 1.21 16 2 C -0.09 0.14 2.65 -12.28 -0.03 0.11 16 3 C -0.02 -0.06 4.75 88.68 0.42 0.36 16 4 N -0.62 -6.28 11.22 24.11 0.27 -6.01 16 5 Si 0.98 -2.41 29.29 68.60 2.01 -0.41 16 6 H -0.23 0.75 7.11 99.48 0.71 1.46 16 7 H -0.27 -0.41 7.11 99.48 0.71 0.30 16 8 H -0.23 0.93 7.11 99.48 0.71 1.63 16 9 C 0.51 2.24 6.48 87.66 0.57 2.81 16 10 O -0.54 -7.71 11.16 -3.03 -0.03 -7.74 16 11 N -0.71 1.98 5.08 -416.30 -2.11 -0.13 16 12 C 0.17 -0.31 0.82 5.07 0.00 -0.31 16 13 C -0.15 -0.03 8.59 71.98 0.62 0.59 16 14 C -0.12 1.21 5.97 31.78 0.19 1.40 16 15 C 0.09 -0.73 6.01 86.73 0.52 -0.21 16 16 N -0.61 -1.26 3.33 -821.99 -2.73 -3.99 16 17 C 0.55 4.13 6.36 85.05 0.54 4.67 16 18 O -0.60 -10.28 13.03 -4.59 -0.06 -10.34 16 19 C -0.29 -0.32 9.27 22.47 0.21 -0.11 16 20 C 0.05 0.11 9.76 22.51 0.22 0.33 16 21 C -0.02 -0.18 5.94 39.08 0.23 0.06 16 22 C -0.15 -1.10 10.86 22.65 0.25 -0.85 16 23 C -0.23 -1.81 10.81 22.01 0.24 -1.57 16 24 C 0.01 0.06 11.90 83.45 0.99 1.05 16 25 N -0.52 -5.08 4.52 -187.33 -0.85 -5.93 16 26 H 0.41 4.20 6.16 -92.71 -0.57 3.63 16 27 C 0.10 0.59 5.85 86.93 0.51 1.10 16 28 H 0.03 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.09 -0.82 7.56 -2.39 -0.02 -0.84 16 30 H 0.09 -0.73 7.94 -2.39 -0.02 -0.75 16 31 H 0.15 -1.50 7.85 -2.39 -0.02 -1.52 16 32 H 0.33 2.50 8.23 -92.71 -0.76 1.73 16 33 H 0.41 -4.15 7.93 -92.71 -0.73 -4.88 16 34 H 0.07 -0.11 8.07 -2.38 -0.02 -0.13 16 35 H 0.05 0.44 5.92 -2.39 -0.01 0.43 16 36 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.12 -1.86 8.09 -2.39 -0.02 -1.88 16 38 H 0.11 -1.18 8.04 -2.39 -0.02 -1.20 16 39 H 0.09 -1.06 8.07 -2.39 -0.02 -1.08 16 40 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.17 -1.04 7.25 -2.91 -0.02 -1.06 16 42 H 0.18 -0.97 8.06 -2.91 -0.02 -0.99 16 43 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 44 H 0.15 0.60 8.06 -2.91 -0.02 0.57 16 45 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 46 H 0.07 0.41 7.99 -2.39 -0.02 0.39 16 47 H 0.04 0.71 6.78 -2.39 -0.02 0.69 16 Total: 0.00 -30.06 376.53 2.32 -27.74 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: -0.30 Total: -3.81 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.13 Total: 10.63 kcal Atomic # 7 Polarization: -10.64 SS G_CDS: -5.42 Total: -16.07 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.09 Total: -18.08 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: 2.01 Total: -0.41 kcal Total: -30.06 2.32 -27.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536893387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.644 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds