Wall clock time and date at job start Tue Mar 31 2020 16:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46632 * 2 1 4 4 N 1.46504 * 109.46835 * 179.97438 * 3 2 1 5 5 C 1.34783 * 119.99945 * 82.89495 * 4 3 2 6 6 O 1.21720 * 119.99796 * 181.93843 * 5 4 3 7 7 C 1.46488 * 119.99822 * 1.94027 * 5 4 3 8 8 C 1.37785 * 125.85840 * 169.40607 * 7 5 4 9 9 C 1.39929 * 107.68549 * 179.97438 * 8 7 5 10 10 O 1.35125 * 145.13720 * 179.97438 * 9 8 7 11 11 C 1.34377 * 109.62363 * 180.02562 * 10 9 8 12 12 C 1.34463 * 109.45075 * 359.97438 * 11 10 9 13 13 C 1.39138 * 107.40989 * 0.02562 * 9 8 7 14 14 N 1.37109 * 108.10331 * 359.75171 * 13 9 8 15 15 H 0.97009 * 125.74063 * 180.27341 * 14 13 9 16 16 C 1.46500 * 120.00163 * 262.89654 * 4 3 2 17 17 H 1.09003 * 110.88570 * 10.42471 * 16 4 3 18 18 C 1.55159 * 111.00224 * 246.54515 * 16 4 3 19 19 C 1.54319 * 102.94391 * 277.42550 * 18 16 4 20 20 N 1.47026 * 107.27159 * 337.81116 * 19 18 16 21 21 C 1.36933 * 125.64984 * 178.97824 * 20 19 18 22 22 H 1.08003 * 120.00387 * 185.16691 * 21 20 19 23 23 C 1.38814 * 119.99845 * 5.16555 * 21 20 19 24 24 N 1.31619 * 119.99944 * 5.21393 * 23 21 20 25 25 Si 1.86799 * 119.99797 * 185.20679 * 23 21 20 26 26 H 1.48502 * 109.47030 * 95.00448 * 25 23 21 27 27 H 1.48501 * 109.47280 * 214.99790 * 25 23 21 28 28 H 1.48493 * 109.47788 * 335.00389 * 25 23 21 29 29 C 1.47525 * 108.71418 * 358.93947 * 20 19 18 30 30 H 1.08998 * 109.47207 * 300.00035 * 1 2 3 31 31 H 1.09000 * 109.47059 * 60.00032 * 1 2 3 32 32 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46980 * 119.99211 * 2 1 3 34 34 H 1.08998 * 109.47207 * 239.99965 * 2 1 3 35 35 H 1.09000 * 109.47372 * 299.99776 * 3 2 1 36 36 H 1.08998 * 109.47353 * 60.00054 * 3 2 1 37 37 H 1.07995 * 126.15537 * 359.97438 * 8 7 5 38 38 H 1.08000 * 125.27679 * 180.02562 * 11 10 9 39 39 H 1.07999 * 126.41588 * 180.02562 * 12 11 10 40 40 H 1.08996 * 110.71678 * 35.79465 * 18 16 4 41 41 H 1.09000 * 110.71430 * 159.06212 * 18 16 4 42 42 H 1.08998 * 109.88153 * 97.22503 * 19 18 16 43 43 H 1.08996 * 109.88658 * 218.23959 * 19 18 16 44 44 H 0.97007 * 119.99860 * 179.97438 * 24 23 21 45 45 H 1.09000 * 110.37388 * 265.30634 * 29 20 19 46 46 H 1.08997 * 110.41119 * 142.95636 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1793 1.2981 -1.1574 6 8 5.3960 1.2627 -1.1527 7 6 3.4480 1.1836 -2.4215 8 6 4.0016 1.2382 -3.6820 9 6 2.9641 1.0878 -4.6088 10 8 2.6504 1.0275 -5.9218 11 6 1.3256 0.8509 -6.0615 12 6 0.7512 0.7921 -4.8472 13 6 1.7816 0.9429 -3.8901 14 7 2.0856 0.9972 -2.5542 15 1 1.4506 0.9195 -1.8250 16 6 4.2369 1.5997 1.2599 17 1 3.5635 1.5205 2.1133 18 6 5.0142 2.9423 1.2875 19 6 6.3059 2.6099 0.5112 20 7 6.4878 1.1522 0.5702 21 6 7.5084 0.4509 -0.0144 22 1 7.5088 -0.6287 0.0163 23 6 8.5424 1.1277 -0.6466 24 7 8.5968 2.4418 -0.5960 25 14 9.8569 0.1733 -1.5688 26 1 9.4983 0.1014 -3.0081 27 1 11.1648 0.8604 -1.4184 28 1 9.9528 -1.2005 -1.0134 29 6 5.3894 0.5699 1.3644 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 5.0479 1.3729 -3.9131 38 1 0.8033 0.7681 -7.0032 39 1 -0.3002 0.6560 -4.6413 40 1 4.4500 3.7250 0.7805 41 1 5.2444 3.2335 2.3123 42 1 6.2074 2.9295 -0.5263 43 1 7.1560 3.1109 0.9741 44 1 9.3196 2.9147 -1.0375 45 1 5.6957 0.4475 2.4033 46 1 5.0820 -0.3874 0.9435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753317666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:43 Heat of formation + Delta-G solvation = 135.225552 kcal Electronic energy + Delta-G solvation = -30364.692115 eV Core-core repulsion = 26454.558252 eV Total energy + Delta-G solvation = -3910.133863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.81410 -40.46824 -38.71195 -36.28806 -35.90154 -33.09078 -32.23733 -31.54482 -30.36323 -28.99413 -28.15072 -27.30761 -25.99919 -24.44612 -23.37645 -21.94633 -21.40441 -20.76509 -20.38897 -19.82820 -18.70936 -17.60389 -17.06924 -16.45922 -16.10697 -16.10150 -15.15286 -14.99286 -14.78552 -14.42886 -14.33174 -13.67006 -13.57929 -13.50333 -13.25749 -13.12853 -12.97745 -12.72773 -12.35316 -11.98520 -11.81522 -11.71708 -11.66039 -11.60708 -11.48010 -11.05105 -10.70816 -10.70144 -10.64087 -10.07232 -9.93944 -9.88001 -9.70144 -9.37732 -8.86284 -8.46272 -8.39149 -7.91494 -7.63054 -6.24120 -5.37765 -2.64163 1.28191 2.48714 2.68977 2.82590 3.03523 3.43430 3.58748 3.63894 3.65007 3.91140 4.52332 4.63448 4.66471 4.75222 4.76824 4.93983 5.02058 5.13918 5.25618 5.34510 5.38603 5.41011 5.54299 5.58638 5.67120 5.69768 5.71356 5.73984 5.90415 6.00702 6.02365 6.06246 6.23106 6.31647 6.49719 6.50886 6.57043 6.63978 6.74119 6.83307 7.19297 7.31230 7.47549 7.80819 7.87441 7.93785 8.11449 8.57839 8.98518 9.53879 10.15889 10.81404 11.74648 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005056 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.468809 B = 5537.121090 C = 7331.564458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.167 4.167 3 C 0.093 3.907 4 N -0.609 5.609 5 C 0.527 3.473 6 O -0.378 6.378 7 C 0.032 3.968 8 C -0.096 4.096 9 C -0.034 4.034 10 O -0.170 6.170 11 C -0.003 4.003 12 C -0.201 4.201 13 C -0.016 4.016 14 N -0.546 5.546 15 H 0.425 0.575 16 C 0.134 3.866 17 H 0.084 0.916 18 C -0.160 4.160 19 C 0.188 3.812 20 N -0.565 5.565 21 C -0.190 4.190 22 H 0.066 0.934 23 C -0.007 4.007 24 N -0.923 5.923 25 Si 0.900 3.100 26 H -0.293 1.293 27 H -0.296 1.296 28 H -0.286 1.286 29 C 0.130 3.870 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.159 0.841 38 H 0.207 0.793 39 H 0.148 0.852 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.245 0.755 45 H 0.024 0.976 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.774 -1.613 -1.776 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.206 4.206 3 C -0.032 4.032 4 N -0.346 5.346 5 C 0.311 3.689 6 O -0.241 6.241 7 C -0.081 4.081 8 C -0.123 4.123 9 C -0.086 4.086 10 O -0.068 6.068 11 C -0.070 4.070 12 C -0.222 4.222 13 C -0.128 4.128 14 N -0.163 5.163 15 H 0.275 0.725 16 C 0.030 3.970 17 H 0.102 0.898 18 C -0.199 4.199 19 C 0.063 3.937 20 N -0.291 5.291 21 C -0.319 4.319 22 H 0.084 0.916 23 C -0.202 4.202 24 N -0.572 5.572 25 Si 0.732 3.268 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.212 1.212 29 C 0.002 3.998 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.177 0.823 38 H 0.224 0.776 39 H 0.166 0.834 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -20.670 -1.578 -1.966 20.823 hybrid contribution -0.182 -0.578 -0.366 0.708 sum -20.852 -2.157 -2.332 21.092 Atomic orbital electron populations 1.21793 0.94997 1.02526 1.01937 1.22349 0.96090 0.97922 1.04263 1.21915 0.82011 0.96167 1.03057 1.47709 1.04424 1.75553 1.06963 1.17355 0.88441 0.81596 0.81556 1.91741 1.08785 1.40385 1.83186 1.21068 0.80941 1.10313 0.95731 1.19965 0.98024 1.08028 0.86257 1.19399 0.95914 1.12277 0.81020 1.84000 1.24386 1.74499 1.23887 1.23924 0.80468 1.03415 0.99237 1.20459 0.98573 1.13044 0.90150 1.19133 0.96259 1.11899 0.85533 1.42975 1.07929 1.60228 1.05123 0.72528 1.22365 0.93234 0.97680 0.83738 0.89806 1.23390 0.99894 0.95695 1.00966 1.21144 0.90534 0.84749 0.97249 1.44142 1.24948 1.02222 1.57776 1.18781 0.96670 0.89529 1.26894 0.91587 1.24549 0.98462 0.95468 1.01741 1.69940 1.33281 1.05331 1.48693 0.86266 0.81570 0.78599 0.80369 1.22077 1.22273 1.21162 1.21774 0.88417 0.94573 0.94992 0.91802 0.93125 0.91858 0.89937 0.91168 0.90967 0.89460 0.82299 0.77633 0.83428 0.92421 0.91739 0.93640 0.93674 0.94473 0.95828 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.77 37.16 0.36 -0.71 16 2 C -0.17 -1.63 5.20 -26.73 -0.14 -1.77 16 3 C 0.09 1.03 4.93 -4.04 -0.02 1.01 16 4 N -0.61 -9.65 2.58 -165.26 -0.43 -10.07 16 5 C 0.53 10.33 7.06 -12.93 -0.09 10.24 16 6 O -0.38 -9.34 8.78 5.17 0.05 -9.30 16 7 C 0.03 0.57 6.47 -81.86 -0.53 0.04 16 8 C -0.10 -1.79 10.60 -39.11 -0.41 -2.20 16 9 C -0.03 -0.57 8.20 -38.61 -0.32 -0.89 16 10 O -0.17 -2.55 10.68 3.19 0.03 -2.51 16 11 C 0.00 -0.03 12.02 29.40 0.35 0.33 16 12 C -0.20 -2.24 10.89 -39.70 -0.43 -2.68 16 13 C -0.02 -0.23 8.11 -83.95 -0.68 -0.92 16 14 N -0.55 -7.77 4.25 -7.04 -0.03 -7.80 16 15 H 0.42 4.90 2.62 -40.82 -0.11 4.79 16 16 C 0.13 2.23 3.76 -65.78 -0.25 1.98 16 17 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 18 C -0.16 -2.99 6.53 -24.90 -0.16 -3.15 16 19 C 0.19 4.70 4.24 -3.06 -0.01 4.68 16 20 N -0.57 -14.66 1.74 -170.00 -0.30 -14.95 16 21 C -0.19 -5.52 8.78 -15.06 -0.13 -5.65 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.22 5.46 -17.43 -0.10 -0.31 16 24 N -0.92 -28.47 10.41 55.49 0.58 -27.89 16 25 Si 0.90 23.67 29.56 -169.99 -5.02 18.64 16 26 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 29 C 0.13 2.70 6.21 -2.47 -0.02 2.69 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.32 7.45 -51.93 -0.39 -0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 6.46 -51.93 -0.34 0.49 16 35 H 0.07 0.80 5.11 -51.93 -0.27 0.54 16 36 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 37 H 0.16 3.10 8.06 -52.49 -0.42 2.68 16 38 H 0.21 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 1.29 6.18 -51.93 -0.32 0.97 16 43 H 0.05 1.28 7.10 -51.93 -0.37 0.91 16 44 H 0.24 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -35.43 355.56 -8.71 -44.14 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.38 Total: 1.70 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.57 Total: 2.69 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.17 Total: -60.72 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.02 Total: 18.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.43 -8.71 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.367 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds