Wall clock time and date at job start Tue Mar 31 2020 16:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46632 * 2 1 4 4 N 1.46504 * 109.46835 * 179.97438 * 3 2 1 5 5 C 1.34783 * 119.99945 * 82.89495 * 4 3 2 6 6 O 1.21720 * 119.99796 * 181.93843 * 5 4 3 7 7 C 1.46488 * 119.99822 * 1.94027 * 5 4 3 8 8 C 1.37785 * 125.85840 * 169.40607 * 7 5 4 9 9 C 1.39929 * 107.68549 * 179.97438 * 8 7 5 10 10 O 1.35125 * 145.13720 * 179.97438 * 9 8 7 11 11 C 1.34377 * 109.62363 * 180.02562 * 10 9 8 12 12 C 1.34463 * 109.45075 * 359.97438 * 11 10 9 13 13 C 1.39138 * 107.40989 * 0.02562 * 9 8 7 14 14 N 1.37109 * 108.10331 * 359.75171 * 13 9 8 15 15 H 0.97009 * 125.74063 * 180.27341 * 14 13 9 16 16 C 1.46500 * 120.00163 * 262.89654 * 4 3 2 17 17 H 1.09003 * 110.88570 * 10.42471 * 16 4 3 18 18 C 1.55159 * 111.00224 * 246.54515 * 16 4 3 19 19 C 1.54319 * 102.94391 * 277.42550 * 18 16 4 20 20 N 1.47026 * 107.27159 * 337.81116 * 19 18 16 21 21 C 1.36933 * 125.64984 * 178.97824 * 20 19 18 22 22 H 1.08003 * 120.00387 * 185.16691 * 21 20 19 23 23 C 1.38814 * 119.99845 * 5.16555 * 21 20 19 24 24 N 1.31619 * 119.99944 * 5.21393 * 23 21 20 25 25 Si 1.86799 * 119.99797 * 185.20679 * 23 21 20 26 26 H 1.48502 * 109.47030 * 95.00448 * 25 23 21 27 27 H 1.48501 * 109.47280 * 214.99790 * 25 23 21 28 28 H 1.48493 * 109.47788 * 335.00389 * 25 23 21 29 29 C 1.47525 * 108.71418 * 358.93947 * 20 19 18 30 30 H 1.08998 * 109.47207 * 300.00035 * 1 2 3 31 31 H 1.09000 * 109.47059 * 60.00032 * 1 2 3 32 32 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46980 * 119.99211 * 2 1 3 34 34 H 1.08998 * 109.47207 * 239.99965 * 2 1 3 35 35 H 1.09000 * 109.47372 * 299.99776 * 3 2 1 36 36 H 1.08998 * 109.47353 * 60.00054 * 3 2 1 37 37 H 1.07995 * 126.15537 * 359.97438 * 8 7 5 38 38 H 1.08000 * 125.27679 * 180.02562 * 11 10 9 39 39 H 1.07999 * 126.41588 * 180.02562 * 12 11 10 40 40 H 1.08996 * 110.71678 * 35.79465 * 18 16 4 41 41 H 1.09000 * 110.71430 * 159.06212 * 18 16 4 42 42 H 1.08998 * 109.88153 * 97.22503 * 19 18 16 43 43 H 1.08996 * 109.88658 * 218.23959 * 19 18 16 44 44 H 0.97007 * 119.99860 * 179.97438 * 24 23 21 45 45 H 1.09000 * 110.37388 * 265.30634 * 29 20 19 46 46 H 1.08997 * 110.41119 * 142.95636 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1793 1.2981 -1.1574 6 8 5.3960 1.2627 -1.1527 7 6 3.4480 1.1836 -2.4215 8 6 4.0016 1.2382 -3.6820 9 6 2.9641 1.0878 -4.6088 10 8 2.6504 1.0275 -5.9218 11 6 1.3256 0.8509 -6.0615 12 6 0.7512 0.7921 -4.8472 13 6 1.7816 0.9429 -3.8901 14 7 2.0856 0.9972 -2.5542 15 1 1.4506 0.9195 -1.8250 16 6 4.2369 1.5997 1.2599 17 1 3.5635 1.5205 2.1133 18 6 5.0142 2.9423 1.2875 19 6 6.3059 2.6099 0.5112 20 7 6.4878 1.1522 0.5702 21 6 7.5084 0.4509 -0.0144 22 1 7.5088 -0.6287 0.0163 23 6 8.5424 1.1277 -0.6466 24 7 8.5968 2.4418 -0.5960 25 14 9.8569 0.1733 -1.5688 26 1 9.4983 0.1014 -3.0081 27 1 11.1648 0.8604 -1.4184 28 1 9.9528 -1.2005 -1.0134 29 6 5.3894 0.5699 1.3644 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 5.0479 1.3729 -3.9131 38 1 0.8033 0.7681 -7.0032 39 1 -0.3002 0.6560 -4.6413 40 1 4.4500 3.7250 0.7805 41 1 5.2444 3.2335 2.3123 42 1 6.2074 2.9295 -0.5263 43 1 7.1560 3.1109 0.9741 44 1 9.3196 2.9147 -1.0375 45 1 5.6957 0.4475 2.4033 46 1 5.0820 -0.3874 0.9435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753317666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:42 Heat of formation + Delta-G solvation = 112.449606 kcal Electronic energy + Delta-G solvation = -30365.679754 eV Core-core repulsion = 26454.558252 eV Total energy + Delta-G solvation = -3911.121502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.93955 -41.78484 -40.07652 -37.67652 -37.37585 -34.62526 -33.37317 -33.08902 -31.59379 -30.85098 -29.50746 -28.78362 -26.99122 -26.40416 -24.74165 -22.78476 -22.53027 -22.03918 -21.76028 -21.65087 -19.98809 -18.87743 -18.58718 -18.09945 -17.43223 -17.24386 -16.56938 -16.43868 -16.20562 -15.93703 -15.70346 -15.50644 -14.78018 -14.55206 -14.40265 -14.34880 -14.18399 -13.68854 -13.63368 -13.61469 -13.35615 -13.07588 -12.90200 -12.78278 -12.73831 -12.64033 -12.53217 -12.08277 -11.97402 -11.90137 -11.68372 -11.59803 -11.38147 -11.01813 -10.56972 -10.45950 -9.60630 -9.48324 -8.81122 -8.31604 -7.63022 -4.87122 0.09046 1.29846 1.40968 1.45928 1.51298 1.57762 1.71959 1.80890 2.31245 2.48446 2.60475 3.52647 3.54424 3.67634 3.76191 3.78847 3.90955 3.98027 4.06754 4.19401 4.25348 4.34090 4.36586 4.40137 4.48532 4.55725 4.72460 4.74222 4.79877 4.81828 4.91169 4.95808 5.04270 5.05590 5.07907 5.14213 5.17038 5.37021 5.48490 5.55255 5.60687 5.83501 5.90951 5.99738 6.16598 6.38761 6.42087 6.54656 7.33128 7.53254 8.03981 8.67012 9.47805 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.005056 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.468809 B = 5537.121090 C = 7331.564458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.162 4.162 3 C 0.087 3.913 4 N -0.602 5.602 5 C 0.526 3.474 6 O -0.447 6.447 7 C 0.015 3.985 8 C -0.125 4.125 9 C -0.077 4.077 10 O -0.192 6.192 11 C 0.018 3.982 12 C -0.205 4.205 13 C -0.002 4.002 14 N -0.524 5.524 15 H 0.438 0.562 16 C 0.148 3.852 17 H 0.145 0.855 18 C -0.145 4.145 19 C 0.199 3.801 20 N -0.580 5.580 21 C -0.185 4.185 22 H 0.060 0.940 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.954 3.046 26 H -0.303 1.303 27 H -0.296 1.296 28 H -0.271 1.271 29 C 0.123 3.877 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.261 0.739 39 H 0.191 0.809 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.000 1.000 43 H 0.000 1.000 44 H 0.234 0.766 45 H 0.040 0.960 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.050 -2.408 -1.006 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.201 4.201 3 C -0.035 4.035 4 N -0.338 5.338 5 C 0.311 3.689 6 O -0.315 6.315 7 C -0.098 4.098 8 C -0.153 4.153 9 C -0.128 4.128 10 O -0.091 6.091 11 C -0.048 4.048 12 C -0.226 4.226 13 C -0.115 4.115 14 N -0.141 5.141 15 H 0.292 0.708 16 C 0.045 3.955 17 H 0.162 0.838 18 C -0.185 4.185 19 C 0.074 3.926 20 N -0.304 5.304 21 C -0.315 4.315 22 H 0.078 0.922 23 C -0.259 4.259 24 N -0.603 5.603 25 Si 0.786 3.214 26 H -0.232 1.232 27 H -0.223 1.223 28 H -0.196 1.196 29 C -0.003 4.003 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.277 0.723 39 H 0.208 0.792 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -26.047 -2.405 -1.131 26.182 hybrid contribution 1.275 -0.395 -0.739 1.526 sum -24.772 -2.800 -1.869 25.000 Atomic orbital electron populations 1.21779 0.92251 1.03384 1.03327 1.22277 0.98315 0.96373 1.03116 1.22285 0.78554 0.97687 1.05020 1.47744 1.06611 1.73873 1.05535 1.17676 0.87949 0.80362 0.82902 1.91708 1.11526 1.43834 1.84455 1.20601 0.82467 1.12220 0.94515 1.19860 0.97444 1.09688 0.88262 1.19345 0.96277 1.14824 0.82318 1.84001 1.27030 1.75105 1.22957 1.25146 0.78595 0.99626 1.01455 1.20988 0.99820 1.13066 0.88757 1.19707 0.96652 1.09783 0.85389 1.42809 1.06609 1.59002 1.05690 0.70837 1.22365 0.93062 0.94320 0.85775 0.83784 1.23230 0.96737 0.97258 1.01232 1.20784 0.92350 0.84164 0.95290 1.44280 1.25497 1.02812 1.57839 1.19017 0.97157 0.89516 1.25814 0.92218 1.25205 1.00896 0.96294 1.03528 1.70175 1.33628 1.06548 1.49982 0.85376 0.79293 0.78187 0.78570 1.23188 1.22284 1.19592 1.22011 0.88553 0.95261 0.94511 0.89857 0.92307 0.91346 0.89840 0.93749 0.90852 0.85561 0.85568 0.72328 0.79198 0.91207 0.89229 0.98226 0.98222 0.95623 0.94271 0.95644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.77 71.98 0.70 -0.67 16 2 C -0.16 -2.60 5.20 30.60 0.16 -2.44 16 3 C 0.09 1.60 4.93 86.38 0.43 2.03 16 4 N -0.60 -18.14 2.58 -794.96 -2.05 -20.19 16 5 C 0.53 21.44 7.06 86.39 0.61 22.05 16 6 O -0.45 -23.74 8.78 -4.41 -0.04 -23.78 16 7 C 0.02 0.57 6.47 40.19 0.26 0.83 16 8 C -0.12 -5.09 10.60 22.57 0.24 -4.85 16 9 C -0.08 -2.65 8.20 22.90 0.19 -2.47 16 10 O -0.19 -5.64 10.68 -11.49 -0.12 -5.76 16 11 C 0.02 0.32 12.02 66.96 0.80 1.12 16 12 C -0.21 -3.73 10.89 22.20 0.24 -3.49 16 13 C 0.00 -0.05 8.11 39.32 0.32 0.27 16 14 N -0.52 -14.32 4.25 -176.19 -0.75 -15.07 16 15 H 0.44 8.98 2.62 -92.70 -0.24 8.73 16 16 C 0.15 4.55 3.76 46.38 0.17 4.73 16 17 H 0.14 2.85 7.90 -2.39 -0.02 2.83 16 18 C -0.15 -5.25 6.53 31.78 0.21 -5.05 16 19 C 0.20 10.50 4.24 86.73 0.37 10.87 16 20 N -0.58 -31.35 1.74 -691.75 -1.20 -32.56 16 21 C -0.18 -11.30 8.78 84.03 0.74 -10.57 16 22 H 0.06 3.62 7.83 -2.91 -0.02 3.59 16 23 C -0.07 -4.26 5.46 84.86 0.46 -3.80 16 24 N -0.95 -62.95 10.41 21.65 0.23 -62.73 16 25 Si 0.95 51.51 29.56 68.60 2.03 53.53 16 26 H -0.30 -16.69 7.11 99.48 0.71 -15.98 16 27 H -0.30 -15.80 7.11 99.48 0.71 -15.10 16 28 H -0.27 -13.77 7.11 99.48 0.71 -13.06 16 29 C 0.12 5.04 6.21 86.84 0.54 5.58 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.46 7.45 -2.39 -0.02 0.44 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 0.96 6.46 -2.39 -0.02 0.94 16 35 H 0.07 1.38 5.11 -2.39 -0.01 1.37 16 36 H 0.13 1.45 7.91 -2.39 -0.02 1.43 16 37 H 0.13 5.75 8.06 -2.91 -0.02 5.73 16 38 H 0.26 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.00 -0.02 6.18 -2.39 -0.01 -0.03 16 43 H 0.00 -0.02 7.10 -2.39 -0.02 -0.03 16 44 H 0.23 15.29 8.31 -92.70 -0.77 14.52 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -89.09 355.56 5.30 -83.79 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.76 Total: 8.61 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 6.44 Total: 14.15 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -3.77 Total: -130.55 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.16 Total: -29.54 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.03 Total: 53.53 kcal Total: -89.09 5.30 -83.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.242 kcal (2) G-P(sol) polarization free energy of solvation -89.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds