Wall clock time and date at job start Tue Mar 31 2020 16:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 N 1.46504 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.34769 * 120.00116 * 271.01832 * 4 3 2 6 6 O 1.21728 * 120.00358 * 186.01808 * 5 4 3 7 7 C 1.46493 * 120.00169 * 6.01643 * 5 4 3 8 8 C 1.37780 * 125.86202 * 187.75066 * 7 5 4 9 9 C 1.39934 * 107.69069 * 179.90479 * 8 7 5 10 10 O 1.35113 * 145.14392 * 179.97438 * 9 8 7 11 11 C 1.34378 * 109.62756 * 180.36538 * 10 9 8 12 12 C 1.34462 * 109.44574 * 0.02562 * 11 10 9 13 13 C 1.39138 * 107.40076 * 0.35904 * 9 8 7 14 14 N 1.37104 * 108.11250 * 359.78167 * 13 9 8 15 15 H 0.96998 * 125.74834 * 180.02562 * 14 13 9 16 16 C 1.46498 * 119.99545 * 91.02164 * 4 3 2 17 17 H 1.08994 * 110.78261 * 1.78148 * 16 4 3 18 18 C 1.55154 * 110.71867 * 125.02491 * 16 4 3 19 19 C 1.54913 * 101.58530 * 153.86038 * 18 16 4 20 20 N 1.47420 * 104.83171 * 322.99256 * 19 18 16 21 21 C 1.36936 * 125.65145 * 204.09177 * 20 19 18 22 22 H 1.07998 * 120.00663 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99485 * 0.03982 * 21 20 19 24 24 N 1.31620 * 120.00417 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99772 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46937 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47287 * 119.99773 * 25 23 21 28 28 H 1.48496 * 109.47161 * 239.99746 * 25 23 21 29 29 C 1.47029 * 108.70437 * 24.12145 * 20 19 18 30 30 H 1.09006 * 109.46700 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46942 * 299.99794 * 1 2 3 32 32 H 1.09001 * 109.47021 * 60.00569 * 1 2 3 33 33 H 1.09009 * 109.47171 * 240.00086 * 2 1 3 34 34 H 1.09001 * 109.47075 * 120.00217 * 2 1 3 35 35 H 1.08997 * 109.46687 * 60.00060 * 3 2 1 36 36 H 1.09001 * 109.47374 * 300.00034 * 3 2 1 37 37 H 1.08005 * 126.15350 * 0.02562 * 8 7 5 38 38 H 1.08000 * 125.27288 * 180.02562 * 11 10 9 39 39 H 1.08001 * 126.41464 * 180.02562 * 12 11 10 40 40 H 1.08997 * 111.00922 * 35.78559 * 18 16 4 41 41 H 1.09000 * 111.00267 * 271.93390 * 18 16 4 42 42 H 1.08993 * 110.36829 * 204.15036 * 19 18 16 43 43 H 1.09009 * 110.45695 * 81.87311 * 19 18 16 44 44 H 0.96993 * 120.00251 * 180.02562 * 24 23 21 45 45 H 1.08999 * 109.87758 * 118.35888 * 29 20 19 46 46 H 1.09001 * 109.88485 * 239.52780 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4219 1.1678 6 8 5.3907 1.5324 1.1733 7 6 3.4515 1.2667 2.4302 8 6 3.9927 1.3789 3.6923 9 6 2.9645 1.1629 4.6166 10 8 2.6492 1.0955 5.9287 11 6 1.3424 0.8139 6.0650 12 6 0.7815 0.6919 4.8490 13 6 1.8019 0.9116 3.8946 14 7 2.1069 0.9766 2.5595 15 1 1.4836 0.8419 1.8286 16 6 4.2380 1.4649 -1.2676 17 1 3.5495 1.5115 -2.1114 18 6 5.2337 2.6542 -1.3052 19 6 6.3055 2.1314 -2.2941 20 7 6.4180 0.6909 -2.0019 21 6 7.5098 -0.0934 -2.2623 22 1 7.4933 -1.1433 -2.0097 23 6 8.6382 0.4611 -2.8507 24 7 8.6584 1.7406 -3.1589 25 14 10.1274 -0.6089 -3.2066 26 1 9.8526 -2.0011 -2.7690 27 1 10.4104 -0.5945 -4.6644 28 1 11.3034 -0.0817 -2.4689 29 6 5.1633 0.2355 -1.3852 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 5.0244 1.5966 3.9261 38 1 0.8231 0.7027 7.0055 39 1 -0.2544 0.4689 4.6403 40 1 5.6653 2.8337 -0.3205 41 1 4.7533 3.5540 -1.6895 42 1 7.2588 2.6297 -2.1186 43 1 5.9815 2.2855 -3.3235 44 1 9.4466 2.1279 -3.5704 45 1 4.6951 -0.5221 -2.0136 46 1 5.3641 -0.1735 -0.3950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753317667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:46 Heat of formation + Delta-G solvation = 94.517212 kcal Electronic energy + Delta-G solvation = -29291.261863 eV Core-core repulsion = 25379.362755 eV Total energy + Delta-G solvation = -3911.899109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.09830 -40.76041 -38.86344 -36.86488 -36.25483 -33.29352 -32.52454 -31.83915 -30.65238 -29.28029 -28.43244 -27.33405 -26.25354 -24.68640 -23.31330 -22.08682 -21.68606 -21.03355 -20.65013 -20.08196 -19.12853 -17.96528 -17.25816 -16.81977 -16.37218 -16.23588 -15.32043 -15.15500 -14.99194 -14.71903 -14.50024 -14.01888 -13.85840 -13.57869 -13.47273 -13.39811 -13.19261 -12.97576 -12.54086 -12.28600 -12.23613 -11.86136 -11.83700 -11.68390 -11.44378 -11.18821 -10.96049 -10.88203 -10.75736 -10.55891 -10.21237 -10.01488 -9.79603 -9.53310 -9.26468 -8.69373 -8.57791 -8.45523 -7.95777 -6.71543 -5.54851 -2.95529 0.92809 2.14657 2.40706 2.54418 2.70856 3.12983 3.38879 3.46865 3.52235 3.54833 4.30019 4.37335 4.44393 4.52888 4.59526 4.74189 4.81163 4.95015 5.10710 5.12870 5.24721 5.29258 5.35278 5.44614 5.52734 5.55813 5.60320 5.65318 5.69519 5.78117 5.86241 5.89312 5.99974 6.18835 6.20571 6.47006 6.54587 6.62397 6.64789 6.79484 7.01986 7.13911 7.17727 7.44866 7.63823 7.73536 7.96504 8.28954 8.47649 9.32254 9.93223 10.57743 11.49197 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.003184 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.317585 B = 8792.992393 C = 9655.045365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.170 4.170 3 C 0.088 3.912 4 N -0.602 5.602 5 C 0.580 3.420 6 O -0.483 6.483 7 C 0.015 3.985 8 C -0.084 4.084 9 C -0.038 4.038 10 O -0.169 6.169 11 C 0.007 3.993 12 C -0.203 4.203 13 C -0.003 4.003 14 N -0.543 5.543 15 H 0.428 0.572 16 C 0.135 3.865 17 H 0.091 0.909 18 C -0.160 4.160 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.215 4.215 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.135 3.865 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.210 0.790 39 H 0.151 0.849 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.490 0.000 13.124 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.209 4.209 3 C -0.036 4.036 4 N -0.335 5.335 5 C 0.367 3.633 6 O -0.355 6.355 7 C -0.098 4.098 8 C -0.112 4.112 9 C -0.090 4.090 10 O -0.066 6.066 11 C -0.061 4.061 12 C -0.224 4.224 13 C -0.116 4.116 14 N -0.158 5.158 15 H 0.278 0.722 16 C 0.033 3.967 17 H 0.109 0.891 18 C -0.200 4.200 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.343 4.343 22 H 0.094 0.906 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.007 3.993 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.179 0.821 38 H 0.227 0.773 39 H 0.169 0.831 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.126 0.874 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.035 0.965 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.472 0.095 13.074 25.139 hybrid contribution -0.050 -0.761 -0.578 0.956 sum -21.522 -0.666 12.496 24.896 Atomic orbital electron populations 1.21797 0.94582 1.02795 1.02141 1.22357 0.96523 0.97494 1.04520 1.22064 0.80996 0.96751 1.03837 1.47860 1.05457 1.73829 1.06364 1.16894 0.86837 0.78141 0.81409 1.90983 1.11983 1.46942 1.85617 1.20540 0.82383 1.11824 0.95018 1.19935 0.98188 1.06886 0.86155 1.19331 0.96246 1.12149 0.81238 1.84015 1.25816 1.73134 1.23656 1.24013 0.80946 1.01787 0.99358 1.20518 0.99179 1.12685 0.90038 1.19160 0.96812 1.10363 0.85261 1.42860 1.09078 1.58377 1.05503 0.72195 1.22287 0.93341 0.98608 0.82478 0.89075 1.23541 0.97649 0.95149 1.03618 1.21854 0.97946 0.84566 0.92374 1.44302 1.10998 1.06011 1.70855 1.19095 0.90862 0.91672 1.32710 0.90627 1.24762 0.98236 0.96311 1.01465 1.69802 1.28648 1.10401 1.48319 0.86003 0.82910 0.79216 0.77414 1.20611 1.21888 1.21761 1.21465 0.87824 0.93237 0.96732 0.91612 0.93052 0.91546 0.89378 0.91172 0.90426 0.88767 0.82125 0.77320 0.83098 0.89214 0.92845 0.87445 0.97244 0.93897 0.96466 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.76 37.16 0.36 -0.58 16 2 C -0.17 -1.50 5.26 -26.73 -0.14 -1.64 16 3 C 0.09 0.88 4.88 -4.04 -0.02 0.86 16 4 N -0.60 -8.94 2.54 -165.62 -0.42 -9.36 16 5 C 0.58 9.95 6.69 -12.94 -0.09 9.86 16 6 O -0.48 -10.42 13.27 5.16 0.07 -10.35 16 7 C 0.01 0.22 6.57 -81.86 -0.54 -0.32 16 8 C -0.08 -1.25 10.59 -39.11 -0.41 -1.66 16 9 C -0.04 -0.52 8.20 -38.61 -0.32 -0.84 16 10 O -0.17 -2.03 10.68 3.22 0.03 -2.00 16 11 C 0.01 0.06 12.02 29.40 0.35 0.41 16 12 C -0.20 -1.80 10.89 -39.70 -0.43 -2.23 16 13 C 0.00 -0.04 8.11 -83.95 -0.68 -0.72 16 14 N -0.54 -6.42 4.29 -7.04 -0.03 -6.45 16 15 H 0.43 4.09 2.58 -40.82 -0.11 3.98 16 16 C 0.14 2.40 3.44 -66.10 -0.23 2.18 16 17 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 18 C -0.16 -3.28 6.39 -24.58 -0.16 -3.44 16 19 C 0.16 4.01 5.89 -2.53 -0.01 4.00 16 20 N -0.60 -16.06 3.39 -170.07 -0.58 -16.63 16 21 C -0.21 -6.29 10.27 -15.06 -0.15 -6.45 16 22 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 24 N -0.92 -27.86 10.09 55.49 0.56 -27.30 16 25 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 C 0.13 2.98 6.52 -3.06 -0.02 2.96 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.26 7.51 -51.93 -0.39 -0.13 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 35 H 0.08 0.72 5.21 -51.93 -0.27 0.45 16 36 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 37 H 0.16 2.29 8.06 -52.48 -0.42 1.87 16 38 H 0.21 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.09 2.02 5.60 -51.93 -0.29 1.73 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.11 3.11 5.87 -51.93 -0.31 2.81 16 43 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.03 0.77 6.46 -51.93 -0.34 0.44 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -35.41 360.75 -8.74 -44.15 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.20 Total: 2.62 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.58 Total: 1.93 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.47 Total: -59.73 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.10 Total: -12.35 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.41 -8.74 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.666 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds