Wall clock time and date at job start Tue Mar 31 2020 16:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 N 1.46504 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.34769 * 120.00116 * 271.01832 * 4 3 2 6 6 O 1.21728 * 120.00358 * 186.01808 * 5 4 3 7 7 C 1.46493 * 120.00169 * 6.01643 * 5 4 3 8 8 C 1.37780 * 125.86202 * 187.75066 * 7 5 4 9 9 C 1.39934 * 107.69069 * 179.90479 * 8 7 5 10 10 O 1.35113 * 145.14392 * 179.97438 * 9 8 7 11 11 C 1.34378 * 109.62756 * 180.36538 * 10 9 8 12 12 C 1.34462 * 109.44574 * 0.02562 * 11 10 9 13 13 C 1.39138 * 107.40076 * 0.35904 * 9 8 7 14 14 N 1.37104 * 108.11250 * 359.78167 * 13 9 8 15 15 H 0.96998 * 125.74834 * 180.02562 * 14 13 9 16 16 C 1.46498 * 119.99545 * 91.02164 * 4 3 2 17 17 H 1.08994 * 110.78261 * 1.78148 * 16 4 3 18 18 C 1.55154 * 110.71867 * 125.02491 * 16 4 3 19 19 C 1.54913 * 101.58530 * 153.86038 * 18 16 4 20 20 N 1.47420 * 104.83171 * 322.99256 * 19 18 16 21 21 C 1.36936 * 125.65145 * 204.09177 * 20 19 18 22 22 H 1.07998 * 120.00663 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99485 * 0.03982 * 21 20 19 24 24 N 1.31620 * 120.00417 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99772 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46937 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47287 * 119.99773 * 25 23 21 28 28 H 1.48496 * 109.47161 * 239.99746 * 25 23 21 29 29 C 1.47029 * 108.70437 * 24.12145 * 20 19 18 30 30 H 1.09006 * 109.46700 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46942 * 299.99794 * 1 2 3 32 32 H 1.09001 * 109.47021 * 60.00569 * 1 2 3 33 33 H 1.09009 * 109.47171 * 240.00086 * 2 1 3 34 34 H 1.09001 * 109.47075 * 120.00217 * 2 1 3 35 35 H 1.08997 * 109.46687 * 60.00060 * 3 2 1 36 36 H 1.09001 * 109.47374 * 300.00034 * 3 2 1 37 37 H 1.08005 * 126.15350 * 0.02562 * 8 7 5 38 38 H 1.08000 * 125.27288 * 180.02562 * 11 10 9 39 39 H 1.08001 * 126.41464 * 180.02562 * 12 11 10 40 40 H 1.08997 * 111.00922 * 35.78559 * 18 16 4 41 41 H 1.09000 * 111.00267 * 271.93390 * 18 16 4 42 42 H 1.08993 * 110.36829 * 204.15036 * 19 18 16 43 43 H 1.09009 * 110.45695 * 81.87311 * 19 18 16 44 44 H 0.96993 * 120.00251 * 180.02562 * 24 23 21 45 45 H 1.08999 * 109.87758 * 118.35888 * 29 20 19 46 46 H 1.09001 * 109.88485 * 239.52780 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4219 1.1678 6 8 5.3907 1.5324 1.1733 7 6 3.4515 1.2667 2.4302 8 6 3.9927 1.3789 3.6923 9 6 2.9645 1.1629 4.6166 10 8 2.6492 1.0955 5.9287 11 6 1.3424 0.8139 6.0650 12 6 0.7815 0.6919 4.8490 13 6 1.8019 0.9116 3.8946 14 7 2.1069 0.9766 2.5595 15 1 1.4836 0.8419 1.8286 16 6 4.2380 1.4649 -1.2676 17 1 3.5495 1.5115 -2.1114 18 6 5.2337 2.6542 -1.3052 19 6 6.3055 2.1314 -2.2941 20 7 6.4180 0.6909 -2.0019 21 6 7.5098 -0.0934 -2.2623 22 1 7.4933 -1.1433 -2.0097 23 6 8.6382 0.4611 -2.8507 24 7 8.6584 1.7406 -3.1589 25 14 10.1274 -0.6089 -3.2066 26 1 9.8526 -2.0011 -2.7690 27 1 10.4104 -0.5945 -4.6644 28 1 11.3034 -0.0817 -2.4689 29 6 5.1633 0.2355 -1.3852 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 5.0244 1.5966 3.9261 38 1 0.8231 0.7027 7.0055 39 1 -0.2544 0.4689 4.6403 40 1 5.6653 2.8337 -0.3205 41 1 4.7533 3.5540 -1.6895 42 1 7.2588 2.6297 -2.1186 43 1 5.9815 2.2855 -3.3235 44 1 9.4466 2.1279 -3.5704 45 1 4.6951 -0.5221 -2.0136 46 1 5.3641 -0.1735 -0.3950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753317667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:45 Heat of formation + Delta-G solvation = 71.724929 kcal Electronic energy + Delta-G solvation = -29292.250211 eV Core-core repulsion = 25379.362755 eV Total energy + Delta-G solvation = -3912.887456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.99257 -41.91003 -40.05748 -38.41614 -37.51118 -34.77078 -33.56693 -33.24105 -31.64606 -31.10661 -29.73416 -28.75117 -27.21934 -26.54666 -24.56347 -22.82375 -22.62835 -22.28583 -22.04593 -21.69355 -20.29373 -19.03694 -18.83400 -18.23313 -17.48305 -17.27454 -16.78767 -16.37849 -16.34680 -16.10939 -15.70529 -15.58030 -15.04171 -14.67873 -14.53221 -14.46380 -14.39475 -14.03073 -13.68091 -13.65727 -13.43293 -13.23868 -13.11329 -12.86806 -12.78018 -12.69915 -12.61251 -12.32226 -12.14750 -11.99507 -11.88907 -11.82943 -11.46668 -11.07513 -10.83831 -10.70996 -9.82018 -9.63524 -8.91111 -8.85223 -7.77082 -5.20965 -0.07230 1.19137 1.43225 1.46160 1.51752 1.55479 1.59352 1.69320 2.14720 2.19761 2.49656 3.30014 3.35094 3.59286 3.66065 3.71538 3.75800 3.93372 3.95421 4.05028 4.13482 4.21744 4.28532 4.33904 4.42136 4.48893 4.64336 4.67832 4.72948 4.75356 4.77529 4.89092 4.96369 5.01163 5.02296 5.06756 5.13114 5.33535 5.41713 5.44454 5.52525 5.60576 5.71486 5.80459 6.12895 6.22566 6.31432 6.35495 7.00893 7.10742 7.77982 8.41565 9.24830 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017128 B = 0.003184 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.317585 B = 8792.992393 C = 9655.045365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.166 4.166 3 C 0.081 3.919 4 N -0.595 5.595 5 C 0.578 3.422 6 O -0.543 6.543 7 C -0.006 4.006 8 C -0.098 4.098 9 C -0.076 4.076 10 O -0.187 6.187 11 C 0.028 3.972 12 C -0.212 4.212 13 C 0.008 3.992 14 N -0.527 5.527 15 H 0.438 0.562 16 C 0.154 3.846 17 H 0.130 0.870 18 C -0.148 4.148 19 C 0.161 3.839 20 N -0.618 5.618 21 C -0.237 4.237 22 H 0.074 0.926 23 C -0.068 4.068 24 N -0.948 5.948 25 Si 0.981 3.019 26 H -0.269 1.269 27 H -0.286 1.286 28 H -0.293 1.293 29 C 0.133 3.867 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.261 0.739 39 H 0.189 0.811 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.000 1.000 44 H 0.247 0.753 45 H 0.029 0.971 46 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.667 -0.665 14.058 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.205 4.205 3 C -0.041 4.041 4 N -0.326 5.326 5 C 0.367 3.633 6 O -0.420 6.420 7 C -0.118 4.118 8 C -0.126 4.126 9 C -0.127 4.127 10 O -0.086 6.086 11 C -0.039 4.039 12 C -0.233 4.233 13 C -0.106 4.106 14 N -0.143 5.143 15 H 0.291 0.709 16 C 0.051 3.949 17 H 0.148 0.852 18 C -0.187 4.187 19 C 0.036 3.964 20 N -0.344 5.344 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.810 3.190 26 H -0.194 1.194 27 H -0.212 1.212 28 H -0.220 1.220 29 C 0.006 3.994 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.277 0.723 39 H 0.206 0.794 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.017 0.983 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -25.738 -0.583 13.995 29.303 hybrid contribution 1.152 -0.582 -0.692 1.464 sum -24.587 -1.165 13.303 27.979 Atomic orbital electron populations 1.21786 0.91875 1.03623 1.03519 1.22300 0.98725 0.96076 1.03360 1.22452 0.77567 0.98220 1.05855 1.47825 1.07468 1.72748 1.04567 1.17236 0.86322 0.77052 0.82647 1.90950 1.14575 1.49876 1.86589 1.20000 0.83711 1.14424 0.93679 1.19984 0.98328 1.07053 0.87283 1.19333 0.96634 1.14339 0.82375 1.84024 1.28081 1.73685 1.22787 1.25168 0.79223 0.98123 1.01351 1.21022 1.00289 1.13022 0.88928 1.19720 0.97339 1.08434 0.85089 1.42714 1.07966 1.57592 1.06029 0.70911 1.22042 0.93172 0.94697 0.85017 0.85233 1.23309 0.97070 0.97400 1.00898 1.21605 0.97648 0.84060 0.93082 1.44591 1.12161 1.06646 1.71045 1.19428 0.92276 0.92086 1.32820 0.90839 1.25642 1.01003 0.97728 1.01660 1.70067 1.29077 1.11835 1.48784 0.84965 0.78898 0.78000 0.77186 1.19378 1.21218 1.21983 1.21591 0.87148 0.95533 0.95090 0.91120 0.91662 0.90201 0.90262 0.92778 0.89295 0.85831 0.83421 0.72297 0.79416 0.91644 0.89517 0.91639 0.98252 0.94325 0.95296 0.97282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.76 71.98 0.70 -0.53 16 2 C -0.17 -2.50 5.26 30.59 0.16 -2.34 16 3 C 0.08 1.40 4.88 86.38 0.42 1.82 16 4 N -0.60 -17.25 2.54 -796.11 -2.02 -19.27 16 5 C 0.58 20.60 6.69 86.40 0.58 21.18 16 6 O -0.54 -25.20 13.27 -4.44 -0.06 -25.26 16 7 C -0.01 -0.17 6.57 40.19 0.26 0.09 16 8 C -0.10 -3.08 10.59 22.57 0.24 -2.84 16 9 C -0.08 -2.06 8.20 22.90 0.19 -1.88 16 10 O -0.19 -4.23 10.68 -11.38 -0.12 -4.35 16 11 C 0.03 0.34 12.02 66.96 0.80 1.15 16 12 C -0.21 -2.87 10.89 22.20 0.24 -2.63 16 13 C 0.01 0.19 8.11 39.32 0.32 0.51 16 14 N -0.53 -11.70 4.29 -176.19 -0.76 -12.46 16 15 H 0.44 7.30 2.58 -92.71 -0.24 7.06 16 16 C 0.15 5.37 3.44 46.18 0.16 5.53 16 17 H 0.13 3.58 7.85 -2.39 -0.02 3.56 16 18 C -0.15 -6.13 6.39 31.99 0.20 -5.92 16 19 C 0.16 8.55 5.89 86.86 0.51 9.06 16 20 N -0.62 -34.65 3.39 -691.97 -2.35 -37.00 16 21 C -0.24 -14.40 10.27 84.03 0.86 -13.54 16 22 H 0.07 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 24 N -0.95 -59.58 10.09 21.65 0.22 -59.36 16 25 Si 0.98 48.53 29.55 68.60 2.03 50.56 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 29 C 0.13 6.02 6.52 86.73 0.57 6.58 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.37 7.51 -2.39 -0.02 0.36 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.05 1.00 6.47 -2.39 -0.02 0.99 16 35 H 0.09 1.39 5.21 -2.39 -0.01 1.38 16 36 H 0.12 1.49 7.92 -2.39 -0.02 1.47 16 37 H 0.15 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.26 0.17 8.06 -2.91 -0.02 0.14 16 39 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.06 3.09 5.60 -2.39 -0.01 3.08 16 41 H 0.09 2.98 8.14 -2.39 -0.02 2.97 16 42 H 0.07 4.03 5.87 -2.39 -0.01 4.01 16 43 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.01 0.46 6.46 -2.39 -0.02 0.44 16 Total: -1.00 -84.42 360.75 4.40 -80.01 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.78 Total: 14.53 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.69 Total: 12.59 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -4.91 Total: -128.08 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.18 Total: -29.61 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -84.42 4.40 -80.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753317667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.740 kcal (2) G-P(sol) polarization free energy of solvation -84.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds