Wall clock time and date at job start Tue Mar 31 2020 16:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99502 * 2 1 4 4 H 1.48505 * 109.46922 * 265.07504 * 3 2 1 5 5 H 1.48495 * 109.47391 * 25.08007 * 3 2 1 6 6 H 1.48502 * 109.46853 * 145.08011 * 3 2 1 7 7 C 1.38809 * 120.00076 * 180.27195 * 2 1 3 8 8 H 1.08005 * 120.00049 * 336.99487 * 7 2 1 9 9 N 1.36934 * 119.99818 * 156.99691 * 7 2 1 10 10 C 1.47541 * 125.65433 * 153.08918 * 9 7 2 11 11 C 1.55416 * 104.88052 * 155.98159 * 10 9 7 12 12 C 1.53853 * 101.30260 * 35.97477 * 11 10 9 13 13 C 1.52571 * 115.91599 * 95.36646 * 12 11 10 14 14 N 1.47854 * 85.65698 * 94.97849 * 13 12 11 15 15 C 1.34773 * 134.36268 * 203.66218 * 14 13 12 16 16 O 1.21286 * 119.99955 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00111 * 359.95747 * 15 14 13 18 18 H 1.08995 * 109.45578 * 60.00145 * 17 15 14 19 19 C 1.53114 * 109.45454 * 179.97438 * 17 15 14 20 20 C 1.53429 * 109.57233 * 190.10661 * 19 17 15 21 21 C 1.50598 * 108.32448 * 310.16444 * 20 19 17 22 22 N 1.32910 * 129.15893 * 196.62518 * 21 20 19 23 23 N 1.29020 * 108.63242 * 179.77581 * 22 21 20 24 24 N 1.29114 * 110.26114 * 0.02562 * 23 22 21 25 25 H 0.96994 * 126.00599 * 180.02562 * 24 23 22 26 26 C 1.34393 * 107.98236 * 0.06903 * 24 23 22 27 27 C 1.50537 * 129.25462 * 179.84944 * 26 24 23 28 28 C 1.47850 * 91.26957 * 23.63299 * 14 13 12 29 29 C 1.47358 * 125.66076 * 333.39059 * 9 7 2 30 30 H 0.97001 * 120.00393 * 359.72677 * 1 2 3 31 31 H 1.09001 * 110.33535 * 274.96937 * 10 9 7 32 32 H 1.08996 * 110.33881 * 37.20906 * 10 9 7 33 33 H 1.08991 * 111.25581 * 277.90371 * 11 10 9 34 34 H 1.09000 * 110.94767 * 153.91013 * 11 10 9 35 35 H 1.08993 * 113.84674 * 209.16311 * 13 12 11 36 36 H 1.09000 * 113.84311 * 340.80018 * 13 12 11 37 37 H 1.08997 * 109.45630 * 310.11929 * 19 17 15 38 38 H 1.08997 * 109.45412 * 70.06128 * 19 17 15 39 39 H 1.08997 * 109.68751 * 190.46046 * 20 19 17 40 40 H 1.09003 * 109.73635 * 69.89474 * 20 19 17 41 41 H 1.08997 * 109.69079 * 76.71768 * 27 26 24 42 42 H 1.08998 * 109.69339 * 316.13937 * 27 26 24 43 43 H 1.09003 * 113.83607 * 222.17622 * 28 14 13 44 44 H 1.09001 * 113.84231 * 90.55168 * 28 14 13 45 45 H 1.08996 * 109.98719 * 301.38011 * 29 9 7 46 46 H 1.09000 * 109.98180 * 62.64122 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6016 1.9864 -1.3950 5 1 1.3994 2.6805 0.5934 6 1 3.4918 1.4725 0.8015 7 6 2.0103 -1.2021 -0.0057 8 1 1.5347 -2.1020 0.3556 9 7 3.2980 -1.2470 -0.4694 10 6 4.3272 -2.2203 -0.0567 11 6 5.3319 -2.2653 -1.2416 12 6 5.3239 -0.7965 -1.6996 13 6 6.4312 0.0854 -1.1307 14 7 7.1665 -0.2291 -2.3743 15 6 8.4686 -0.2409 -2.7218 16 8 8.7926 -0.5502 -3.8489 17 6 9.5219 0.1306 -1.7101 18 1 9.4691 -0.5534 -0.8632 19 6 10.9064 0.0356 -2.3571 20 6 11.9884 0.1643 -1.2770 21 6 11.6782 1.3758 -0.4379 22 7 12.4677 2.0422 0.3982 23 7 11.7977 3.0209 0.9060 24 7 10.5940 3.0287 0.4390 25 1 9.8983 3.6651 0.6664 26 6 10.4744 1.9995 -0.4169 27 6 9.2799 1.5653 -1.2236 28 6 5.9041 -0.5263 -3.0843 29 6 3.8874 -0.3274 -1.4585 30 1 -0.4851 0.8400 0.0040 31 1 4.8246 -1.8829 0.8526 32 1 3.8799 -3.2022 0.0973 33 1 4.9785 -2.9243 -2.0345 34 1 6.3233 -2.5634 -0.9007 35 1 6.1538 1.1352 -1.0364 36 1 6.8960 -0.3167 -0.2304 37 1 11.0074 -0.9267 -2.8589 38 1 11.0227 0.8384 -3.0852 39 1 12.9644 0.2834 -1.7473 40 1 11.9895 -0.7268 -0.6491 41 1 9.1551 2.2273 -2.0805 42 1 8.3855 1.5965 -0.6014 43 1 5.9543 -1.4095 -3.7212 44 1 5.4662 0.3375 -3.5847 45 1 3.3211 -0.3682 -2.3889 46 1 3.8879 0.6899 -1.0673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073124708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:11 Heat of formation + Delta-G solvation = 121.836009 kcal Electronic energy + Delta-G solvation = -28923.163024 eV Core-core repulsion = 25044.741299 eV Total energy + Delta-G solvation = -3878.421726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.80016 -40.98382 -39.10111 -36.80809 -35.95470 -34.24514 -32.46255 -31.21044 -30.66044 -29.85763 -28.97495 -26.50265 -26.26968 -24.87678 -23.91667 -23.30283 -22.96069 -20.63753 -20.43195 -19.32427 -18.75917 -18.32169 -17.24837 -17.12703 -16.61079 -16.24927 -15.89789 -15.47236 -14.92087 -14.57597 -14.39630 -14.32494 -14.02397 -13.73169 -13.57782 -13.23255 -13.09810 -12.88585 -12.53678 -12.40489 -12.28510 -12.12675 -11.89210 -11.61186 -11.47111 -11.42656 -11.39869 -11.11384 -10.96063 -10.68796 -10.66728 -10.60262 -10.45752 -10.03902 -9.75160 -9.57076 -9.26225 -8.80989 -8.66239 -7.09202 -6.07581 -3.41512 1.16719 2.16651 2.21966 2.51511 2.62334 3.20375 3.32993 3.38518 3.75744 3.99474 4.20489 4.29771 4.33134 4.43004 4.47602 4.57333 4.66298 4.74823 4.80423 4.92803 5.01337 5.11906 5.12853 5.23087 5.25792 5.29239 5.34861 5.37418 5.38155 5.55988 5.60587 5.66997 5.70310 5.77231 5.81359 5.85979 5.95527 5.97710 6.14733 6.29503 6.45049 6.50294 6.51154 6.66435 7.54705 7.68160 7.97159 8.09394 8.22096 8.73309 9.56846 10.08715 11.09059 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003238 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.697747 B = 8644.556652 C = 9659.585129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.607 5.607 10 C 0.130 3.870 11 C -0.105 4.105 12 C -0.106 4.106 13 C 0.112 3.888 14 N -0.639 5.639 15 C 0.541 3.459 16 O -0.539 6.539 17 C -0.096 4.096 18 H 0.105 0.895 19 C -0.100 4.100 20 C -0.034 4.034 21 C -0.015 4.015 22 N -0.258 5.258 23 N -0.088 5.088 24 N -0.381 5.381 25 H 0.449 0.551 26 C -0.010 4.010 27 C -0.040 4.040 28 C 0.124 3.876 29 C 0.137 3.863 30 H 0.264 0.736 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.012 2.280 -3.027 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.334 5.334 10 C 0.005 3.995 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.010 4.010 14 N -0.374 5.374 15 C 0.330 3.670 16 O -0.416 6.416 17 C -0.118 4.118 18 H 0.123 0.877 19 C -0.138 4.138 20 C -0.073 4.073 21 C -0.155 4.155 22 N -0.124 5.124 23 N -0.067 5.067 24 N -0.100 5.100 25 H 0.295 0.705 26 C -0.146 4.146 27 C -0.079 4.079 28 C 0.002 3.998 29 C 0.012 3.988 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 21.281 2.826 -2.701 21.637 hybrid contribution -0.963 1.269 -0.263 1.614 sum 20.318 4.095 -2.964 20.938 Atomic orbital electron populations 1.69848 1.05704 1.26776 1.52184 1.25199 0.95156 0.97479 0.99373 0.86919 0.79412 0.84815 0.77546 1.21133 1.23039 1.20354 1.18613 0.84898 0.95018 1.38742 0.89325 1.44805 1.08939 1.34511 1.45185 1.21777 0.89433 0.94420 0.93849 1.22464 0.99444 0.92964 0.99408 1.22468 0.95555 0.97603 0.95081 1.23235 0.89515 0.99908 0.88391 1.50208 1.04109 1.67478 1.15609 1.20023 0.81508 0.77198 0.88285 1.90715 1.80621 1.48920 1.21369 1.21284 0.95037 0.96714 0.98786 0.87682 1.21491 0.90586 1.04660 0.97086 1.20026 0.99896 0.92482 0.94891 1.21784 0.90439 1.01456 1.01801 1.74838 1.25874 1.02363 1.09296 1.78593 0.89668 1.18130 1.20328 1.44713 1.12692 1.22724 1.29856 0.70494 1.21756 0.99937 0.93362 0.99538 1.20149 0.93328 0.95966 0.98492 1.23053 0.79947 1.01275 0.95558 1.21361 0.89479 0.93896 0.94047 0.92569 0.95747 0.93115 0.90493 0.91416 0.89439 0.89567 0.89166 0.90677 0.89127 0.89512 0.88908 0.89115 0.89538 0.89426 0.93375 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.97 55.49 0.78 -25.92 16 2 C 0.03 0.77 5.42 -17.43 -0.09 0.67 16 3 Si 0.88 20.93 24.64 -169.99 -4.19 16.74 16 4 H -0.28 -6.41 6.74 56.52 0.38 -6.03 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.33 7.10 56.52 0.40 -5.92 16 7 C -0.25 -6.56 10.52 -15.06 -0.16 -6.71 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 9 N -0.61 -13.35 3.09 -170.19 -0.53 -13.87 16 10 C 0.13 2.27 7.26 -2.19 -0.02 2.25 16 11 C -0.10 -1.43 6.43 -25.00 -0.16 -1.59 16 12 C -0.11 -1.46 0.97 -154.71 -0.15 -1.61 16 13 C 0.11 1.25 6.24 -3.52 -0.02 1.23 16 14 N -0.64 -7.30 3.58 -185.67 -0.66 -7.96 16 15 C 0.54 6.26 7.36 -10.99 -0.08 6.18 16 16 O -0.54 -8.11 16.54 5.55 0.09 -8.02 16 17 C -0.10 -0.81 2.32 -91.50 -0.21 -1.02 16 18 H 0.11 0.79 8.12 -51.93 -0.42 0.37 16 19 C -0.10 -0.81 4.64 -26.45 -0.12 -0.93 16 20 C -0.03 -0.26 6.30 -27.71 -0.17 -0.44 16 21 C -0.01 -0.15 7.11 -83.12 -0.59 -0.74 16 22 N -0.26 -3.22 12.40 33.16 0.41 -2.81 16 23 N -0.09 -1.02 13.40 60.35 0.81 -0.21 16 24 N -0.38 -3.15 6.97 33.39 0.23 -2.91 16 25 H 0.45 2.07 8.96 -190.07 -1.70 0.36 16 26 C -0.01 -0.09 7.15 -82.50 -0.59 -0.68 16 27 C -0.04 -0.29 5.32 -27.75 -0.15 -0.44 16 28 C 0.12 1.53 8.16 -3.53 -0.03 1.50 16 29 C 0.14 2.59 5.18 -3.56 -0.02 2.57 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.09 0.93 7.95 -51.93 -0.41 0.52 16 36 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 37 H 0.09 0.75 7.76 -51.93 -0.40 0.35 16 38 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.09 0.57 6.61 -51.93 -0.34 0.23 16 43 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 46 H 0.03 0.56 3.31 -51.93 -0.17 0.38 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -34.04 362.46 -8.26 -42.30 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -8.10 Total: -3.04 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.57 Total: 0.25 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 1.04 Total: -53.69 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.19 Total: 16.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.04 -8.26 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073124708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.134 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds