Wall clock time and date at job start Tue Mar 31 2020 16:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99502 * 2 1 4 4 H 1.48505 * 109.46922 * 265.07504 * 3 2 1 5 5 H 1.48495 * 109.47391 * 25.08007 * 3 2 1 6 6 H 1.48502 * 109.46853 * 145.08011 * 3 2 1 7 7 C 1.38809 * 120.00076 * 180.27195 * 2 1 3 8 8 H 1.08005 * 120.00049 * 336.99487 * 7 2 1 9 9 N 1.36934 * 119.99818 * 156.99691 * 7 2 1 10 10 C 1.47541 * 125.65433 * 153.08918 * 9 7 2 11 11 C 1.55416 * 104.88052 * 155.98159 * 10 9 7 12 12 C 1.53853 * 101.30260 * 35.97477 * 11 10 9 13 13 C 1.52571 * 115.91599 * 95.36646 * 12 11 10 14 14 N 1.47854 * 85.65698 * 94.97849 * 13 12 11 15 15 C 1.34773 * 134.36268 * 203.66218 * 14 13 12 16 16 O 1.21286 * 119.99955 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00111 * 359.95747 * 15 14 13 18 18 H 1.08995 * 109.45578 * 60.00145 * 17 15 14 19 19 C 1.53114 * 109.45454 * 179.97438 * 17 15 14 20 20 C 1.53429 * 109.57233 * 190.10661 * 19 17 15 21 21 C 1.50598 * 108.32448 * 310.16444 * 20 19 17 22 22 N 1.32910 * 129.15893 * 196.62518 * 21 20 19 23 23 N 1.29020 * 108.63242 * 179.77581 * 22 21 20 24 24 N 1.29114 * 110.26114 * 0.02562 * 23 22 21 25 25 H 0.96994 * 126.00599 * 180.02562 * 24 23 22 26 26 C 1.34393 * 107.98236 * 0.06903 * 24 23 22 27 27 C 1.50537 * 129.25462 * 179.84944 * 26 24 23 28 28 C 1.47850 * 91.26957 * 23.63299 * 14 13 12 29 29 C 1.47358 * 125.66076 * 333.39059 * 9 7 2 30 30 H 0.97001 * 120.00393 * 359.72677 * 1 2 3 31 31 H 1.09001 * 110.33535 * 274.96937 * 10 9 7 32 32 H 1.08996 * 110.33881 * 37.20906 * 10 9 7 33 33 H 1.08991 * 111.25581 * 277.90371 * 11 10 9 34 34 H 1.09000 * 110.94767 * 153.91013 * 11 10 9 35 35 H 1.08993 * 113.84674 * 209.16311 * 13 12 11 36 36 H 1.09000 * 113.84311 * 340.80018 * 13 12 11 37 37 H 1.08997 * 109.45630 * 310.11929 * 19 17 15 38 38 H 1.08997 * 109.45412 * 70.06128 * 19 17 15 39 39 H 1.08997 * 109.68751 * 190.46046 * 20 19 17 40 40 H 1.09003 * 109.73635 * 69.89474 * 20 19 17 41 41 H 1.08997 * 109.69079 * 76.71768 * 27 26 24 42 42 H 1.08998 * 109.69339 * 316.13937 * 27 26 24 43 43 H 1.09003 * 113.83607 * 222.17622 * 28 14 13 44 44 H 1.09001 * 113.84231 * 90.55168 * 28 14 13 45 45 H 1.08996 * 109.98719 * 301.38011 * 29 9 7 46 46 H 1.09000 * 109.98180 * 62.64122 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6016 1.9864 -1.3950 5 1 1.3994 2.6805 0.5934 6 1 3.4918 1.4725 0.8015 7 6 2.0103 -1.2021 -0.0057 8 1 1.5347 -2.1020 0.3556 9 7 3.2980 -1.2470 -0.4694 10 6 4.3272 -2.2203 -0.0567 11 6 5.3319 -2.2653 -1.2416 12 6 5.3239 -0.7965 -1.6996 13 6 6.4312 0.0854 -1.1307 14 7 7.1665 -0.2291 -2.3743 15 6 8.4686 -0.2409 -2.7218 16 8 8.7926 -0.5502 -3.8489 17 6 9.5219 0.1306 -1.7101 18 1 9.4691 -0.5534 -0.8632 19 6 10.9064 0.0356 -2.3571 20 6 11.9884 0.1643 -1.2770 21 6 11.6782 1.3758 -0.4379 22 7 12.4677 2.0422 0.3982 23 7 11.7977 3.0209 0.9060 24 7 10.5940 3.0287 0.4390 25 1 9.8983 3.6651 0.6664 26 6 10.4744 1.9995 -0.4169 27 6 9.2799 1.5653 -1.2236 28 6 5.9041 -0.5263 -3.0843 29 6 3.8874 -0.3274 -1.4585 30 1 -0.4851 0.8400 0.0040 31 1 4.8246 -1.8829 0.8526 32 1 3.8799 -3.2022 0.0973 33 1 4.9785 -2.9243 -2.0345 34 1 6.3233 -2.5634 -0.9007 35 1 6.1538 1.1352 -1.0364 36 1 6.8960 -0.3167 -0.2304 37 1 11.0074 -0.9267 -2.8589 38 1 11.0227 0.8384 -3.0852 39 1 12.9644 0.2834 -1.7473 40 1 11.9895 -0.7268 -0.6491 41 1 9.1551 2.2273 -2.0805 42 1 8.3855 1.5965 -0.6014 43 1 5.9543 -1.4095 -3.7212 44 1 5.4662 0.3375 -3.5847 45 1 3.3211 -0.3682 -2.3889 46 1 3.8879 0.6899 -1.0673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073124708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:10 Heat of formation + Delta-G solvation = 97.222710 kcal Electronic energy + Delta-G solvation = -28924.230337 eV Core-core repulsion = 25044.741299 eV Total energy + Delta-G solvation = -3879.489038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.50272 -41.96578 -40.07248 -37.65877 -37.24622 -34.95262 -34.30981 -32.18101 -31.33064 -31.14016 -30.18475 -27.59784 -27.37485 -25.85953 -25.20517 -24.02070 -23.71109 -22.20681 -21.21546 -20.20324 -19.69956 -19.06701 -18.97387 -18.09312 -17.55144 -17.23474 -16.77403 -16.73174 -16.16450 -15.63587 -15.34327 -15.07440 -14.95854 -14.83251 -14.69078 -14.38730 -14.22754 -14.19312 -13.69873 -13.53459 -13.19067 -13.09035 -12.97644 -12.76639 -12.62352 -12.58265 -12.30677 -12.22385 -12.07798 -11.91398 -11.80345 -11.63208 -11.53911 -11.34875 -11.23335 -10.74110 -10.65124 -9.94216 -9.73015 -8.92987 -8.17671 -5.47793 0.49310 1.31607 1.41562 1.42626 1.48512 1.53153 1.74812 1.83988 2.44759 3.02652 3.08745 3.23263 3.32744 3.45424 3.57889 3.62454 3.69403 3.85541 3.92836 3.99022 4.05819 4.18396 4.33931 4.38298 4.45743 4.48851 4.50833 4.55862 4.63302 4.69256 4.71873 4.75094 4.78224 4.89335 4.91836 4.98693 5.06530 5.08360 5.12399 5.20252 5.22001 5.34995 5.38703 5.78176 5.93200 6.14060 6.67911 6.81525 7.10168 7.36618 7.55889 8.15860 9.03189 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003238 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.697747 B = 8644.556652 C = 9659.585129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.036 4.036 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.315 1.315 6 H -0.255 1.255 7 C -0.239 4.239 8 H 0.049 0.951 9 N -0.627 5.627 10 C 0.124 3.876 11 C -0.089 4.089 12 C -0.103 4.103 13 C 0.118 3.882 14 N -0.634 5.634 15 C 0.544 3.456 16 O -0.577 6.577 17 C -0.090 4.090 18 H 0.123 0.877 19 C -0.094 4.094 20 C -0.029 4.029 21 C -0.029 4.029 22 N -0.292 5.292 23 N -0.116 5.116 24 N -0.365 5.365 25 H 0.464 0.536 26 C 0.001 3.999 27 C -0.034 4.034 28 C 0.123 3.877 29 C 0.134 3.866 30 H 0.262 0.738 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.031 0.969 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.562 3.088 -3.062 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.244 1.244 6 H -0.180 1.180 7 C -0.368 4.368 8 H 0.067 0.933 9 N -0.354 5.354 10 C 0.000 4.000 11 C -0.127 4.127 12 C -0.104 4.104 13 C -0.004 4.004 14 N -0.368 5.368 15 C 0.335 3.665 16 O -0.456 6.456 17 C -0.111 4.111 18 H 0.141 0.859 19 C -0.132 4.132 20 C -0.068 4.068 21 C -0.169 4.169 22 N -0.158 5.158 23 N -0.095 5.095 24 N -0.087 5.087 25 H 0.313 0.687 26 C -0.136 4.136 27 C -0.073 4.073 28 C 0.001 3.999 29 C 0.009 3.991 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.049 0.951 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 23.883 3.638 -2.718 24.311 hybrid contribution -1.833 0.875 -0.295 2.053 sum 22.050 4.513 -3.013 22.708 Atomic orbital electron populations 1.70003 1.07695 1.27453 1.55138 1.25908 0.95806 1.01356 1.00081 0.85837 0.78346 0.79379 0.78633 1.19160 1.24380 1.17953 1.18508 0.87078 0.93709 1.37466 0.93323 1.44904 1.08359 1.35996 1.46125 1.21970 0.89202 0.92744 0.96082 1.22377 0.99706 0.93066 0.97588 1.22391 0.93162 0.97889 0.96986 1.23340 0.87908 1.00241 0.88906 1.50122 1.03897 1.67199 1.15565 1.20461 0.81642 0.76188 0.88203 1.90712 1.81086 1.50634 1.23205 1.21272 0.93751 0.97783 0.98314 0.85896 1.21414 0.90683 1.04196 0.96919 1.20052 0.99927 0.92144 0.94629 1.22207 0.90800 1.02153 1.01783 1.74799 1.27135 1.03256 1.10578 1.78531 0.90890 1.18609 1.21468 1.44730 1.12270 1.22686 1.28966 0.68670 1.21911 0.99873 0.92851 0.99004 1.20181 0.93263 0.95174 0.98722 1.23027 0.80448 1.01689 0.94782 1.21422 0.92342 0.93103 0.92267 0.92900 0.94342 0.94131 0.90737 0.88204 0.88032 0.87054 0.89462 0.91500 0.88774 0.88289 0.88363 0.87191 0.89552 0.88834 0.95129 0.95868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.67 13.97 21.65 0.30 -58.37 16 2 C -0.04 -2.05 5.42 84.86 0.46 -1.59 16 3 Si 0.95 42.81 24.64 68.60 1.69 44.50 16 4 H -0.27 -11.03 6.74 99.48 0.67 -10.36 16 5 H -0.31 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.25 -10.43 7.10 99.48 0.71 -9.73 16 7 C -0.24 -13.04 10.52 84.03 0.88 -12.15 16 8 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 9 N -0.63 -26.97 3.09 -692.36 -2.14 -29.11 16 10 C 0.12 4.07 7.26 87.01 0.63 4.70 16 11 C -0.09 -2.13 6.43 31.71 0.20 -1.92 16 12 C -0.10 -2.47 0.97 -52.10 -0.05 -2.52 16 13 C 0.12 2.00 6.24 85.98 0.54 2.53 16 14 N -0.63 -11.67 3.58 -859.71 -3.07 -14.75 16 15 C 0.54 10.53 7.36 87.66 0.65 11.17 16 16 O -0.58 -15.84 16.54 -3.05 -0.05 -15.89 16 17 C -0.09 -1.13 2.32 -11.36 -0.03 -1.16 16 18 H 0.12 1.20 8.12 -2.39 -0.02 1.18 16 19 C -0.09 -1.25 4.64 30.78 0.14 -1.10 16 20 C -0.03 -0.37 6.30 29.96 0.19 -0.18 16 21 C -0.03 -0.51 7.11 41.75 0.30 -0.21 16 22 N -0.29 -6.90 12.40 -48.99 -0.61 -7.51 16 23 N -0.12 -2.51 13.40 37.02 0.50 -2.01 16 24 N -0.36 -5.03 6.97 -48.27 -0.34 -5.36 16 25 H 0.46 2.83 8.96 -219.68 -1.97 0.86 16 26 C 0.00 0.01 7.15 41.50 0.30 0.30 16 27 C -0.03 -0.34 5.32 29.94 0.16 -0.18 16 28 C 0.12 2.62 8.16 85.97 0.70 3.32 16 29 C 0.13 4.73 5.18 86.22 0.45 5.18 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.80 8.06 -2.39 -0.02 1.78 16 35 H 0.10 1.53 7.95 -2.39 -0.02 1.51 16 36 H 0.11 1.42 8.12 -2.39 -0.02 1.40 16 37 H 0.09 1.24 7.76 -2.39 -0.02 1.23 16 38 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 0.97 8.12 -2.39 -0.02 0.95 16 42 H 0.11 0.75 6.61 -2.39 -0.02 0.73 16 43 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 46 H 0.02 0.87 3.31 -2.39 -0.01 0.86 16 Total: -1.00 -76.96 362.46 0.80 -76.16 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -0.99 Total: 6.14 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.52 Total: 6.19 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -5.36 Total: -117.11 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.05 Total: -15.89 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.69 Total: 44.50 kcal Total: -76.96 0.80 -76.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073124708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.386 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds