Wall clock time and date at job start Tue Mar 31 2020 17:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47509 * 2 1 4 4 C 1.36734 * 127.14049 * 268.85335 * 3 2 1 5 5 C 1.50708 * 126.34780 * 359.95682 * 4 3 2 6 6 C 1.52995 * 109.47032 * 270.29397 * 5 4 3 7 7 C 1.50702 * 109.47293 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99458 * 359.97438 * 7 6 5 9 9 C 1.37868 * 120.00381 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00334 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00181 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47049 * 90.00316 * 11 9 7 13 13 H 1.48503 * 109.47322 * 210.00149 * 11 9 7 14 14 H 1.48499 * 109.47165 * 330.00283 * 11 9 7 15 15 N 1.30295 * 107.30740 * 180.22114 * 4 3 2 16 16 N 1.28528 * 110.05276 * 359.77606 * 15 4 3 17 17 C 1.31219 * 109.85856 * 359.97438 * 16 15 4 18 18 N 1.38588 * 126.47129 * 179.97438 * 17 16 15 19 19 C 1.46895 * 110.99743 * 60.71006 * 18 17 16 20 20 C 1.46902 * 110.99933 * 296.75437 * 18 17 16 21 21 C 1.50702 * 109.46832 * 190.00058 * 20 18 17 22 22 C 1.38091 * 119.58074 * 95.00144 * 21 20 18 23 23 C 1.38785 * 119.28304 * 180.02562 * 22 21 20 24 24 C 1.38423 * 118.48469 * 359.97438 * 23 22 21 25 25 C 1.38872 * 119.11690 * 0.02562 * 24 23 22 26 26 O 1.35675 * 119.68628 * 179.97438 * 25 24 23 27 27 N 1.31935 * 119.58082 * 275.29467 * 21 20 18 28 28 H 1.09006 * 109.47402 * 55.54618 * 1 2 3 29 29 H 1.08991 * 109.47444 * 175.54674 * 1 2 3 30 30 H 1.09002 * 109.46798 * 295.54771 * 1 2 3 31 31 H 1.09007 * 109.46895 * 240.00589 * 2 1 3 32 32 H 1.08995 * 109.47643 * 120.00261 * 2 1 3 33 33 H 1.09006 * 109.46771 * 30.28777 * 5 4 3 34 34 H 1.08991 * 109.47144 * 150.29117 * 5 4 3 35 35 H 1.09008 * 109.47025 * 299.99838 * 6 5 4 36 36 H 1.09000 * 109.47474 * 59.99552 * 6 5 4 37 37 H 0.96997 * 120.01055 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.47386 * 290.35539 * 19 18 17 39 39 H 1.08998 * 109.47657 * 50.36187 * 19 18 17 40 40 H 1.08999 * 109.46959 * 170.36292 * 19 18 17 41 41 H 1.09003 * 109.46801 * 69.99711 * 20 18 17 42 42 H 1.09001 * 109.46709 * 310.00062 * 20 18 17 43 43 H 1.07994 * 120.35777 * 0.04345 * 22 21 20 44 44 H 1.08001 * 120.75419 * 179.97438 * 23 22 21 45 45 H 1.08004 * 120.43685 * 180.02562 * 24 23 22 46 46 H 0.96694 * 114.00143 * 89.99545 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3142 2.1523 -1.0898 5 6 2.1995 1.7385 -2.5344 6 6 3.5182 1.1118 -2.9916 7 6 3.4034 0.6975 -4.4360 8 1 2.4818 0.8641 -4.9738 9 6 4.4747 0.1058 -5.0707 10 7 5.5969 -0.0976 -4.4156 11 14 4.3321 -0.4084 -6.8609 12 1 4.7544 0.7160 -7.7340 13 1 5.2057 -1.5833 -7.1096 14 1 2.9229 -0.7668 -7.1622 15 7 2.7190 3.3092 -0.6477 16 7 2.6948 3.3230 0.6373 17 6 2.2692 2.1663 1.0875 18 7 2.1107 1.8075 2.4167 19 6 1.1390 2.6826 3.0859 20 6 3.3996 1.8158 3.1216 21 6 3.2319 1.1907 4.4825 22 6 3.5167 -0.1493 4.6570 23 6 3.3595 -0.7187 5.9128 24 6 2.9204 0.0840 6.9515 25 6 2.6530 1.4240 6.7033 26 8 2.2216 2.2212 7.7128 27 7 2.8093 1.9291 5.4909 28 1 -0.3634 0.5814 -0.8474 29 1 -0.3634 -1.0245 -0.0798 30 1 -0.3633 0.4432 0.9272 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.3951 1.0106 -2.6410 34 1 1.9815 2.6134 -3.1467 35 1 4.3227 1.8397 -2.8849 36 1 3.7364 0.2369 -2.3792 37 1 6.3508 -0.5135 -4.8622 38 1 1.5631 3.6809 3.1938 39 1 0.2282 2.7371 2.4897 40 1 0.9048 2.2791 4.0710 41 1 3.7457 2.8433 3.2337 42 1 4.1311 1.2466 2.5478 43 1 3.8582 -0.7475 3.8252 44 1 3.5750 -1.7644 6.0759 45 1 2.7876 -0.3263 7.9416 46 1 2.9332 2.6557 8.2024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121843708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:27 Heat of formation + Delta-G solvation = 79.484721 kcal Electronic energy + Delta-G solvation = -28046.030887 eV Core-core repulsion = 24165.772671 eV Total energy + Delta-G solvation = -3880.258215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.175 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61022 -40.86096 -38.04062 -36.89509 -35.49248 -33.98693 -32.92642 -31.83400 -31.21953 -30.30369 -28.64412 -27.58419 -25.69371 -24.89502 -23.83143 -23.61571 -22.42174 -21.75004 -20.36703 -19.89420 -18.93992 -17.16353 -17.02994 -16.67992 -16.52003 -16.17821 -16.01109 -15.56730 -14.74638 -14.63540 -14.47281 -14.29118 -13.76468 -13.51780 -13.23329 -13.12823 -13.07846 -12.95174 -12.39648 -12.35295 -12.22941 -12.15407 -12.03429 -11.79216 -11.38520 -11.24299 -11.05512 -11.00053 -10.69312 -10.42328 -10.24061 -9.99332 -9.88600 -9.77593 -9.71992 -9.24809 -9.24343 -8.79679 -8.43229 -8.41598 -6.07182 -4.11316 0.60406 0.84455 2.08112 2.50674 3.10137 3.24367 3.28838 3.35476 3.36522 3.37860 3.91338 4.19047 4.36882 4.39741 4.69303 4.71467 4.78800 4.91230 4.99041 5.04181 5.10023 5.15505 5.27234 5.28945 5.33601 5.43355 5.50681 5.53296 5.64345 5.66688 5.72791 5.81517 5.83792 5.89398 6.04124 6.13182 6.33564 6.36847 6.46388 6.51105 6.67609 6.94406 7.11190 7.46244 7.53331 7.59743 7.67172 7.90213 8.27712 8.94773 9.16275 9.53456 11.03915 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.002459 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.354643 B =11382.342673 C =11807.392812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.461 5.461 4 C 0.219 3.781 5 C -0.033 4.033 6 C 0.032 3.968 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.894 3.106 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.273 1.273 15 N -0.298 5.298 16 N -0.309 5.309 17 C 0.317 3.683 18 N -0.456 5.456 19 C 0.043 3.957 20 C 0.113 3.887 21 C 0.163 3.837 22 C -0.159 4.159 23 C -0.060 4.060 24 C -0.187 4.187 25 C 0.310 3.690 26 O -0.483 6.483 27 N -0.493 5.493 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.026 0.974 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -3.433 23.312 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.154 5.154 4 C -0.048 4.048 5 C -0.072 4.072 6 C -0.006 4.006 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.722 3.278 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.198 1.198 15 N -0.138 5.138 16 N -0.154 5.154 17 C -0.039 4.039 18 N -0.181 5.181 19 C -0.104 4.104 20 C -0.015 4.015 21 C 0.025 3.975 22 C -0.179 4.179 23 C -0.085 4.085 24 C -0.208 4.208 25 C 0.130 3.870 26 O -0.290 6.290 27 N -0.213 5.213 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.396 -1.869 23.062 24.291 hybrid contribution 0.446 -1.661 -0.445 1.776 sum -6.950 -3.529 22.617 23.922 Atomic orbital electron populations 1.22096 0.94197 1.03078 1.02802 1.21837 0.95474 0.79062 1.05203 1.46398 1.49470 1.13654 1.05876 1.25643 0.98690 0.87927 0.92558 1.20469 1.02639 1.01530 0.82604 1.19071 0.89922 0.95541 0.96080 1.21135 0.99125 1.39883 0.96050 0.92281 1.25005 0.95272 0.95758 0.98205 1.69966 1.03130 1.43333 1.36678 0.86560 0.78011 0.78187 0.85051 1.20522 1.21247 1.19802 1.74066 1.19574 1.18129 1.02041 1.74506 1.18708 1.17655 1.04490 1.22028 1.05599 0.88696 0.87621 1.58542 1.10406 1.53049 0.96140 1.22377 0.94119 0.95177 0.98727 1.21048 0.90005 1.01805 0.88617 1.20681 0.93371 0.90370 0.93107 1.22015 1.01922 0.95513 0.98487 1.21532 0.94729 1.00343 0.91935 1.22118 1.02812 0.94508 1.01402 1.19118 0.93492 0.87937 0.86423 1.84788 1.36157 1.64338 1.43734 1.66956 1.13244 1.41081 1.00004 0.91876 0.90495 0.92102 0.87900 0.88702 0.91125 0.89259 0.95609 0.96760 0.92860 0.93224 0.91701 0.90235 0.90706 0.88560 0.84039 0.84095 0.84251 0.74238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 10.24 37.16 0.38 -1.39 16 2 C 0.11 1.39 6.62 -4.04 -0.03 1.36 16 3 N -0.46 -7.70 2.81 -114.08 -0.32 -8.02 16 4 C 0.22 4.32 7.32 -154.02 -1.13 3.19 16 5 C -0.03 -0.65 5.35 -27.88 -0.15 -0.80 16 6 C 0.03 0.80 4.95 -27.88 -0.14 0.66 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 11 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 N -0.30 -6.47 12.18 32.99 0.40 -6.07 16 16 N -0.31 -6.18 12.19 30.32 0.37 -5.81 16 17 C 0.32 5.32 6.36 -318.86 -2.03 3.29 16 18 N -0.46 -6.18 4.77 -183.76 -0.88 -7.06 16 19 C 0.04 0.56 9.06 60.06 0.54 1.10 16 20 C 0.11 1.40 5.20 -4.97 -0.03 1.37 16 21 C 0.16 1.76 5.70 -82.60 -0.47 1.29 16 22 C -0.16 -1.37 9.71 -39.43 -0.38 -1.76 16 23 C -0.06 -0.42 10.17 -39.31 -0.40 -0.82 16 24 C -0.19 -1.39 10.04 -39.28 -0.39 -1.79 16 25 C 0.31 2.97 7.74 -17.13 -0.13 2.83 16 26 O -0.48 -3.99 13.56 -18.73 -0.25 -4.25 16 27 N -0.49 -5.64 9.00 -9.55 -0.09 -5.73 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.40 7.82 -51.93 -0.41 1.00 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.27 7.90 -51.93 -0.41 0.86 16 34 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.05 0.68 8.07 -51.93 -0.42 0.27 16 39 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 40 H 0.08 0.98 6.69 -51.93 -0.35 0.63 16 41 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 42 H 0.10 1.17 7.95 -51.93 -0.41 0.76 16 43 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 46 H 0.40 1.32 9.06 45.56 0.41 1.74 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -34.53 392.51 -10.09 -44.61 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.19 Total: 0.20 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -4.76 Total: -4.32 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.22 Total: -58.12 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.25 Total: -4.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.53 -10.09 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121843708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.097 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds