Wall clock time and date at job start Tue Mar 31 2020 16:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47456 * 2 1 4 4 N 1.46500 * 109.47021 * 120.00510 * 2 1 3 5 5 C 1.36935 * 120.00015 * 302.23492 * 4 2 1 6 6 H 1.08005 * 120.00004 * 321.91875 * 5 4 2 7 7 C 1.38807 * 120.00034 * 141.91408 * 5 4 2 8 8 N 1.31616 * 120.00420 * 338.45332 * 7 5 4 9 9 Si 1.86800 * 120.00072 * 158.45617 * 7 5 4 10 10 H 1.48499 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47595 * 119.99680 * 9 7 5 12 12 H 1.48503 * 109.47114 * 240.00327 * 9 7 5 13 13 C 1.46501 * 119.99906 * 122.23954 * 4 2 1 14 14 C 1.52998 * 109.47529 * 90.00079 * 13 4 2 15 15 C 1.52996 * 109.47354 * 179.97438 * 14 13 4 16 16 N 1.46504 * 109.47002 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99520 * 179.97438 * 16 15 14 18 18 O 1.21587 * 120.00576 * 359.97438 * 17 16 15 19 19 C 1.47604 * 119.99634 * 179.97438 * 17 16 15 20 20 C 1.41820 * 119.98225 * 0.14861 * 19 17 16 21 21 C 1.35633 * 119.59973 * 180.20224 * 20 19 17 22 22 C 1.41053 * 119.40335 * 359.84944 * 21 20 19 23 23 N 1.32195 * 133.25458 * 179.97438 * 22 21 20 24 24 N 1.28648 * 109.56084 * 180.02562 * 23 22 21 25 25 C 1.30723 * 110.34637 * 359.97438 * 24 23 22 26 26 N 1.36257 * 107.45154 * 0.02562 * 25 24 23 27 27 C 1.35844 * 133.52815 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47066 * 305.40231 * 1 2 3 29 29 H 1.09002 * 109.46659 * 65.39947 * 1 2 3 30 30 H 1.08997 * 109.47456 * 185.39844 * 1 2 3 31 31 H 1.09009 * 109.47057 * 240.00221 * 2 1 3 32 32 H 1.08991 * 109.47342 * 180.44046 * 3 2 1 33 33 H 1.08999 * 109.47244 * 300.44811 * 3 2 1 34 34 H 1.09002 * 109.46569 * 60.44449 * 3 2 1 35 35 H 0.96995 * 120.00797 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46956 * 329.99419 * 13 4 2 37 37 H 1.09010 * 109.46689 * 209.99645 * 13 4 2 38 38 H 1.09004 * 109.47377 * 59.99143 * 14 13 4 39 39 H 1.09000 * 109.46866 * 300.00065 * 14 13 4 40 40 H 1.08999 * 109.47319 * 59.99759 * 15 14 13 41 41 H 1.09004 * 109.46697 * 299.99174 * 15 14 13 42 42 H 0.97002 * 120.00164 * 359.97438 * 16 15 14 43 43 H 1.08000 * 120.20074 * 0.05184 * 20 19 17 44 44 H 1.08006 * 120.29939 * 179.83508 * 21 20 19 45 45 H 1.07998 * 126.27720 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.80863 * 359.93388 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6501 -0.2503 2.4393 6 1 1.5674 0.8088 2.6345 7 6 1.3832 -1.1649 3.4488 8 7 1.0658 -2.4058 3.1456 9 14 1.4743 -0.6347 5.2376 10 1 1.8494 0.8003 5.3101 11 1 0.1509 -0.8340 5.8811 12 1 2.4958 -1.4490 5.9438 13 6 2.9006 -1.8526 1.0621 14 6 4.3580 -1.3874 1.0482 15 6 5.2794 -2.6008 0.9089 16 7 6.6750 -2.1554 0.8961 17 6 7.6693 -3.0579 0.7817 18 8 7.4082 -4.2419 0.6895 19 6 9.0754 -2.6091 0.7682 20 6 9.3797 -1.2284 0.8789 21 6 10.6743 -0.8242 0.8616 22 6 11.6985 -1.7860 0.7367 23 7 13.0171 -1.7043 0.6899 24 7 13.5176 -2.8830 0.5671 25 6 12.5664 -3.7790 0.5286 26 7 11.3790 -3.1190 0.6342 27 6 10.0823 -3.5235 0.6528 28 1 -0.3633 0.5954 0.8377 29 1 -0.3633 0.4278 -0.9344 30 1 -0.3634 -1.0231 0.0967 31 1 1.8933 -0.5138 -0.8901 32 1 3.1299 1.4425 -0.0079 33 1 1.6702 1.9587 -0.8859 34 1 1.6832 1.9540 0.8940 35 1 0.8790 -3.0448 3.8509 36 1 2.6764 -2.3735 0.1314 37 1 2.7427 -2.5275 1.9035 38 1 4.5821 -0.8663 1.9790 39 1 4.5159 -0.7124 0.2070 40 1 5.0555 -3.1222 -0.0218 41 1 5.1215 -3.2754 1.7504 42 1 6.8834 -1.2109 0.9700 43 1 8.5853 -0.5029 0.9740 44 1 10.9188 0.2248 0.9424 45 1 12.6976 -4.8464 0.4303 46 1 9.8464 -4.5743 0.5711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691754301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:34 Heat of formation + Delta-G solvation = 89.059290 kcal Electronic energy + Delta-G solvation = -27395.613417 eV Core-core repulsion = 23515.770386 eV Total energy + Delta-G solvation = -3879.843031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.175 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.98978 -40.24703 -38.09020 -36.85462 -35.33467 -34.51019 -32.62368 -32.11864 -31.30146 -29.86574 -28.89662 -26.23859 -26.06095 -24.71132 -24.18488 -23.09508 -22.93725 -21.22041 -20.81595 -19.58019 -18.88731 -17.75423 -17.43536 -16.97901 -16.46036 -16.03174 -15.63008 -15.42391 -15.21788 -14.99379 -14.44043 -14.19752 -13.99111 -13.71381 -13.50786 -12.91361 -12.85581 -12.53829 -12.50386 -12.08721 -11.84680 -11.75028 -11.58585 -11.52542 -11.36329 -11.05230 -11.03779 -10.82454 -10.73116 -10.49825 -10.33820 -10.17702 -10.08481 -9.97139 -9.66860 -9.55612 -9.10998 -8.63986 -8.52309 -6.60109 -5.83275 -3.41185 -0.03784 0.41776 1.72030 2.06382 2.55342 2.96662 3.13388 3.30095 3.40318 3.41309 3.56446 4.01153 4.03931 4.24396 4.26767 4.40921 4.42905 4.78417 5.13257 5.14001 5.30105 5.32313 5.45839 5.49664 5.52497 5.67695 5.74199 5.88775 5.91018 6.09346 6.19907 6.26703 6.28669 6.30980 6.39186 6.55615 6.62026 6.66884 6.74308 6.76317 7.02544 7.15418 7.30247 7.33047 7.59800 7.80453 7.95936 8.05474 8.49093 9.15738 9.78056 10.37216 11.16877 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.002270 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.088011 B =12329.141971 C =12736.315129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.162 3.838 3 C -0.153 4.153 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.060 0.940 7 C 0.013 3.987 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.289 1.289 13 C 0.152 3.848 14 C -0.147 4.147 15 C 0.120 3.880 16 N -0.712 5.712 17 C 0.564 3.436 18 O -0.536 6.536 19 C -0.149 4.149 20 C -0.067 4.067 21 C -0.079 4.079 22 C 0.201 3.799 23 N -0.289 5.289 24 N -0.251 5.251 25 C 0.127 3.873 26 N -0.398 5.398 27 C 0.139 3.861 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.254 0.746 36 H 0.025 0.975 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.400 0.600 43 H 0.153 0.847 44 H 0.165 0.835 45 H 0.231 0.769 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.414 0.174 -6.655 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.299 5.299 5 C -0.383 4.383 6 H 0.078 0.922 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.025 3.975 14 C -0.188 4.188 15 C -0.003 4.003 16 N -0.362 5.362 17 C 0.349 3.651 18 O -0.415 6.415 19 C -0.156 4.156 20 C -0.092 4.092 21 C -0.101 4.101 22 C -0.049 4.049 23 N -0.134 5.134 24 N -0.089 5.089 25 C -0.156 4.156 26 N -0.078 5.078 27 C 0.013 3.987 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.171 0.829 44 H 0.182 0.818 45 H 0.247 0.753 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 16.731 -0.270 -6.640 18.003 hybrid contribution -1.121 0.034 1.087 1.562 sum 15.610 -0.236 -5.552 16.570 Atomic orbital electron populations 1.22060 0.97855 1.01589 0.98973 1.20419 0.92491 0.91783 0.89788 1.22178 1.00022 0.98987 1.00075 1.43848 1.51708 1.33246 1.01107 1.18926 1.41474 0.91298 0.86578 0.92249 1.25174 0.98497 0.96427 0.98631 1.70003 1.46967 1.04211 1.31573 0.86430 0.77413 0.78303 0.85834 1.20148 1.21713 1.21514 1.20776 0.84846 0.90896 1.01000 1.22535 0.98822 0.95793 1.01615 1.21602 0.77671 0.98724 1.02317 1.46070 1.07146 1.10057 1.72942 1.17617 0.83952 0.86091 0.77467 1.90828 1.84215 1.16285 1.50150 1.19635 0.94259 0.93679 1.08020 1.21276 0.97001 0.94531 0.96344 1.20201 0.88993 0.99189 1.01672 1.22609 0.94541 0.83514 1.04201 1.74961 1.02347 1.14723 1.21363 1.74197 1.25778 0.95336 1.13592 1.26697 0.78270 1.01681 1.08910 1.43903 1.07283 1.09535 1.47060 1.21766 0.79542 1.01776 0.95577 0.92768 0.95271 0.92998 0.93719 0.93916 0.94582 0.92764 0.93637 0.95637 0.88766 0.91513 0.93088 0.91506 0.91021 0.76470 0.82912 0.81791 0.75261 0.79509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.03 37.16 0.34 -2.48 16 2 C 0.16 3.13 3.36 -67.93 -0.23 2.90 16 3 C -0.15 -2.62 9.20 37.16 0.34 -2.27 16 4 N -0.58 -12.86 2.36 -165.66 -0.39 -13.26 16 5 C -0.25 -6.28 8.23 -15.06 -0.12 -6.40 16 6 H 0.06 1.50 6.95 -52.48 -0.36 1.14 16 7 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 8 N -0.89 -23.98 11.52 55.49 0.64 -23.34 16 9 Si 0.89 20.44 29.61 -169.99 -5.03 15.41 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.15 3.13 5.27 -4.04 -0.02 3.11 16 14 C -0.15 -2.37 5.65 -26.73 -0.15 -2.52 16 15 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 16 N -0.71 -8.01 5.51 -61.32 -0.34 -8.34 16 17 C 0.56 6.65 7.76 -12.44 -0.10 6.55 16 18 O -0.54 -8.15 16.27 5.29 0.09 -8.07 16 19 C -0.15 -1.34 5.84 -105.33 -0.61 -1.95 16 20 C -0.07 -0.47 9.53 -39.14 -0.37 -0.84 16 21 C -0.08 -0.61 10.09 -39.45 -0.40 -1.01 16 22 C 0.20 2.12 7.92 -155.94 -1.23 0.88 16 23 N -0.29 -3.72 12.30 31.19 0.38 -3.34 16 24 N -0.25 -3.03 12.18 29.87 0.36 -2.66 16 25 C 0.13 1.08 12.97 -89.07 -1.16 -0.08 16 26 N -0.40 -3.64 2.94 -63.62 -0.19 -3.83 16 27 C 0.14 1.16 10.53 -16.40 -0.17 0.99 16 28 H 0.05 1.11 7.80 -51.93 -0.40 0.71 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.81 7.78 -51.92 -0.40 0.41 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 1.00 7.06 -51.93 -0.37 0.63 16 35 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 37 H 0.09 2.26 5.56 -51.92 -0.29 1.97 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.40 3.41 6.50 -40.82 -0.27 3.15 16 43 H 0.15 0.68 6.44 -52.49 -0.34 0.34 16 44 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.23 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.19 1.27 7.56 -52.49 -0.40 0.87 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -32.10 383.12 -9.31 -41.40 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.60 Total: 1.45 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -4.00 Total: -1.19 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.47 Total: -54.78 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.10 -9.31 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691754301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.461 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds