Wall clock time and date at job start Tue Mar 31 2020 17:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46674 * 2 1 4 4 C 1.34956 * 126.03493 * 124.99946 * 3 2 1 5 5 C 1.35313 * 107.74640 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.04247 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46613 * 340.00386 * 6 5 4 8 8 C 1.53006 * 109.47239 * 99.99994 * 6 5 4 9 9 N 1.46496 * 109.47428 * 220.00098 * 6 5 4 10 10 C 1.34773 * 119.99909 * 154.99906 * 9 6 5 11 11 O 1.21607 * 120.00418 * 0.02562 * 10 9 6 12 12 C 1.47435 * 119.99821 * 180.02562 * 10 9 6 13 13 C 1.41288 * 126.41520 * 359.68462 * 12 10 9 14 14 N 1.30451 * 108.02177 * 179.85504 * 13 12 10 15 15 N 1.39935 * 108.89423 * 0.41101 * 14 13 12 16 16 C 1.46502 * 125.75179 * 179.73581 * 15 14 13 17 17 C 1.50699 * 109.47397 * 270.00007 * 16 15 14 18 18 H 1.08003 * 119.99453 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00408 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99802 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47487 * 59.99903 * 21 19 17 23 23 H 1.48504 * 109.47020 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47214 * 299.99856 * 21 19 17 25 25 C 1.34256 * 108.49406 * 359.73395 * 15 14 13 26 26 C 1.50703 * 126.28911 * 179.97438 * 25 15 14 27 27 C 1.39873 * 107.91992 * 0.26270 * 5 4 3 28 28 N 1.30836 * 108.20396 * 359.55653 * 27 5 4 29 29 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47405 * 300.00369 * 1 2 3 31 31 H 1.08999 * 109.46786 * 59.99944 * 1 2 3 32 32 H 1.09000 * 109.47063 * 240.00003 * 2 1 3 33 33 H 1.08999 * 109.46786 * 120.00056 * 2 1 3 34 34 H 1.08000 * 126.12294 * 0.04400 * 4 3 2 35 35 H 1.09001 * 109.47002 * 60.00070 * 8 6 5 36 36 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.47050 * 300.00336 * 8 6 5 38 38 H 0.97003 * 119.99825 * 335.00114 * 9 6 5 39 39 H 1.08002 * 125.98785 * 0.02562 * 13 12 10 40 40 H 1.09002 * 109.46983 * 29.99534 * 16 15 14 41 41 H 1.08998 * 109.47184 * 149.99996 * 16 15 14 42 42 H 0.97009 * 120.00123 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.47064 * 270.00219 * 26 25 15 44 44 H 1.08996 * 109.47111 * 30.00090 * 26 25 15 45 45 H 1.09001 * 109.46964 * 150.00343 * 26 25 15 46 46 H 1.08000 * 125.89944 * 179.73273 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9212 0.8940 5 6 3.0711 3.2138 0.5465 6 6 3.9546 4.2000 1.2661 7 1 4.1333 3.8525 2.2836 8 6 5.2888 4.3231 0.5274 9 7 3.2957 5.5079 1.3054 10 6 3.6047 6.3892 2.2770 11 8 4.4309 6.0990 3.1209 12 6 2.9412 7.7052 2.3169 13 6 1.9718 8.1836 1.4071 14 7 1.6267 9.3851 1.7799 15 7 2.3550 9.7315 2.9235 16 6 2.2603 11.0022 3.6464 17 6 3.2549 11.9801 3.0760 18 1 3.8935 11.6847 2.2566 19 6 3.3491 13.2521 3.5994 20 7 2.5705 13.6123 4.5962 21 14 4.5815 14.4644 2.8917 22 1 4.2854 14.6891 1.4540 23 1 4.4847 15.7529 3.6238 24 1 5.9539 13.9153 3.0345 25 6 3.1552 8.7030 3.2465 26 6 4.1117 8.6481 4.4098 27 6 2.3067 3.4744 -0.5956 28 7 1.6799 2.3750 -0.9275 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3192 1.4125 1.7357 35 1 5.1101 4.6706 -0.4901 36 1 5.9279 5.0361 1.0482 37 1 5.7791 3.3501 0.4982 38 1 2.6369 5.7395 0.6320 39 1 1.5825 7.6473 0.5543 40 1 1.2531 11.4056 3.5416 41 1 2.4775 10.8369 4.7017 42 1 2.6364 14.5074 4.9642 43 1 5.0851 9.0268 4.0980 44 1 3.7276 9.2610 5.2252 45 1 4.2143 7.6169 4.7475 46 1 2.2467 4.4192 -1.1154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771897607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:39 Heat of formation + Delta-G solvation = 101.255629 kcal Electronic energy + Delta-G solvation = -27436.919802 eV Core-core repulsion = 23557.605644 eV Total energy + Delta-G solvation = -3879.314158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56421 -40.70781 -38.80954 -35.76538 -34.32481 -33.85894 -32.15859 -31.47572 -30.86298 -30.35519 -28.55974 -27.24319 -26.56567 -24.38620 -23.71106 -23.08243 -21.86141 -21.15500 -20.17039 -19.49670 -18.94393 -17.54596 -16.89665 -16.68522 -15.81389 -15.58011 -15.19880 -14.83699 -14.67222 -14.50396 -14.33373 -14.05994 -13.83130 -13.62163 -13.17921 -13.17427 -12.93537 -12.57990 -12.50962 -12.43507 -12.33895 -12.05411 -11.96911 -11.84225 -11.72737 -11.48573 -11.42759 -11.10824 -10.84808 -10.62137 -10.34596 -10.12941 -9.92373 -9.69257 -9.34441 -8.94052 -8.68369 -8.61954 -8.54143 -7.85472 -6.31092 -4.38806 1.61135 2.18787 2.25784 2.51195 2.85398 3.21935 3.24994 3.25772 3.33156 3.67794 3.99735 4.08724 4.26518 4.48226 4.54917 4.65814 4.72617 4.93760 5.03081 5.14751 5.17442 5.22624 5.24671 5.31895 5.37691 5.49027 5.57911 5.65654 5.69321 5.79417 5.81764 5.94796 6.08720 6.17224 6.21425 6.38977 6.47351 6.61754 6.69406 6.77364 6.84899 6.94170 7.21080 7.43193 7.58917 7.80106 7.81861 7.86808 8.43094 8.65984 8.70885 9.27857 10.77045 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.002175 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.682951 B =12870.100784 C =13160.128824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 N -0.373 5.373 4 C 0.066 3.934 5 C -0.242 4.242 6 C 0.227 3.773 7 H 0.090 0.910 8 C -0.156 4.156 9 N -0.727 5.727 10 C 0.606 3.394 11 O -0.558 6.558 12 C -0.332 4.332 13 C 0.058 3.942 14 N -0.297 5.297 15 N -0.315 5.315 16 C 0.251 3.749 17 C -0.539 4.539 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.164 3.836 26 C -0.092 4.092 27 C 0.056 3.944 28 N -0.292 5.292 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.174 0.826 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.396 0.604 39 H 0.175 0.825 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -26.133 -6.928 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 N -0.156 5.156 4 C -0.081 4.081 5 C -0.254 4.254 6 C 0.121 3.879 7 H 0.108 0.892 8 C -0.214 4.214 9 N -0.378 5.378 10 C 0.396 3.604 11 O -0.437 6.437 12 C -0.347 4.347 13 C -0.129 4.129 14 N -0.117 5.117 15 N -0.091 5.091 16 C 0.134 3.866 17 C -0.578 4.578 18 H 0.083 0.917 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.735 3.265 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.027 3.973 26 C -0.150 4.150 27 C -0.130 4.130 28 N -0.113 5.113 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.191 0.809 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.230 0.770 39 H 0.192 0.808 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.163 -25.716 -7.205 26.731 hybrid contribution 1.246 0.575 -0.073 1.374 sum 0.083 -25.140 -7.278 26.173 Atomic orbital electron populations 1.22059 0.93696 1.02865 1.03765 1.21684 0.96179 0.77433 1.03709 1.48685 1.35411 1.10218 1.21241 1.22288 0.95131 0.94592 0.96060 1.20157 1.08401 0.95275 1.01535 1.18894 0.89587 0.80683 0.98736 0.89236 1.22155 0.96687 1.01965 1.00615 1.45786 1.45073 1.15613 1.31351 1.17281 0.80485 0.82726 0.79868 1.90679 1.34898 1.78579 1.39553 1.19689 1.12285 0.97980 1.04764 1.23712 0.96738 0.93323 0.99166 1.77137 1.18882 1.14803 1.00832 1.49353 1.26780 1.13672 1.19341 1.19835 1.00126 0.75489 0.91127 1.21210 1.20601 0.96927 1.19032 0.91713 1.24921 0.96167 0.97898 0.94700 1.69905 1.38100 1.20444 1.24298 0.86379 0.81160 0.79676 0.79290 1.19915 1.20903 1.19844 1.21475 0.92428 0.87229 0.96174 1.20562 0.96833 1.04178 0.93439 1.23699 0.95732 0.97514 0.96075 1.77333 1.23585 0.96818 1.13575 0.90721 0.91966 0.91032 0.89834 0.88651 0.80855 0.92543 0.91697 0.92192 0.76999 0.80846 0.92565 0.92592 0.92085 0.89885 0.90980 0.88809 0.80150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.10 37.16 0.38 -0.49 16 2 C 0.13 0.67 7.23 -4.04 -0.03 0.64 16 3 N -0.37 -3.20 3.68 -61.36 -0.23 -3.43 16 4 C 0.07 0.54 11.36 -17.22 -0.20 0.35 16 5 C -0.24 -2.31 5.09 -105.05 -0.53 -2.84 16 6 C 0.23 2.44 3.01 -69.08 -0.21 2.23 16 7 H 0.09 1.06 7.57 -51.93 -0.39 0.66 16 8 C -0.16 -1.60 9.47 37.16 0.35 -1.24 16 9 N -0.73 -8.98 5.05 -56.01 -0.28 -9.26 16 10 C 0.61 9.95 7.78 -12.52 -0.10 9.85 16 11 O -0.56 -10.37 14.50 5.27 0.08 -10.30 16 12 C -0.33 -6.08 6.13 -105.06 -0.64 -6.72 16 13 C 0.06 1.01 11.50 -16.98 -0.20 0.82 16 14 N -0.30 -6.44 12.50 30.86 0.39 -6.05 16 15 N -0.31 -7.17 3.56 -57.77 -0.21 -7.37 16 16 C 0.25 6.31 5.97 -5.19 -0.03 6.27 16 17 C -0.54 -14.61 9.39 -34.44 -0.32 -14.93 16 18 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 21 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.16 3.37 7.01 -81.60 -0.57 2.79 16 26 C -0.09 -1.68 9.57 36.01 0.34 -1.33 16 27 C 0.06 0.55 11.20 -17.36 -0.19 0.36 16 28 N -0.29 -3.15 12.42 30.62 0.38 -2.77 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.25 8.07 -51.93 -0.42 -0.17 16 34 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 4.12 6.57 -40.82 -0.27 3.85 16 39 H 0.17 2.20 7.50 -52.49 -0.39 1.81 16 40 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 42 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.07 1.28 7.05 -51.93 -0.37 0.91 16 45 H 0.09 1.62 6.50 -51.93 -0.34 1.29 16 46 H 0.18 1.39 7.71 -52.49 -0.40 0.98 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -33.08 391.54 -7.03 -40.10 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.72 Total: 3.80 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.05 Total: -2.54 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.79 Total: -52.86 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.08 -7.03 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771897607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.356 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds