Wall clock time and date at job start Tue Mar 31 2020 16:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47383 * 2 1 4 4 C 1.53002 * 109.46845 * 239.99833 * 2 1 3 5 5 C 1.50695 * 109.47139 * 120.00402 * 2 1 3 6 6 C 1.38630 * 120.32793 * 59.98984 * 5 2 1 7 7 C 1.38586 * 118.49105 * 180.02562 * 6 5 2 8 8 C 1.39312 * 119.05940 * 0.02562 * 7 6 5 9 9 C 1.48166 * 119.72223 * 179.97438 * 8 7 6 10 10 O 1.21510 * 120.00466 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99714 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47017 * 294.99808 * 13 12 11 15 15 N 1.46500 * 109.47295 * 54.99786 * 13 12 11 16 16 C 1.36935 * 119.99902 * 204.99988 * 15 13 12 17 17 H 1.08001 * 120.00292 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99890 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99688 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00063 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47025 * 90.00429 * 20 18 16 22 22 H 1.48495 * 109.47428 * 210.00108 * 20 18 16 23 23 H 1.48501 * 109.47450 * 330.00828 * 20 18 16 24 24 C 1.53001 * 109.47049 * 174.99938 * 13 12 11 25 25 C 1.52990 * 117.49847 * 248.74417 * 24 13 12 26 26 C 1.52997 * 117.49598 * 180.08504 * 24 13 12 27 27 N 1.32713 * 120.55197 * 0.25578 * 8 7 6 28 28 C 1.31524 * 121.64454 * 359.47394 * 27 8 7 29 29 H 1.09002 * 109.46712 * 300.00537 * 1 2 3 30 30 H 1.09002 * 109.46911 * 59.99625 * 1 2 3 31 31 H 1.09002 * 109.47547 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47105 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47403 * 300.00074 * 3 2 1 34 34 H 1.09002 * 109.47635 * 60.00029 * 3 2 1 35 35 H 1.08999 * 109.47299 * 300.00761 * 4 2 1 36 36 H 1.09002 * 109.46656 * 60.00069 * 4 2 1 37 37 H 1.08995 * 109.47287 * 180.02562 * 4 2 1 38 38 H 1.07997 * 120.75171 * 0.02562 * 6 5 2 39 39 H 1.08000 * 120.47014 * 180.02562 * 7 6 5 40 40 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 42 42 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 43 43 H 0.96994 * 119.99416 * 25.00262 * 15 13 12 44 44 H 0.97006 * 119.99824 * 179.97438 * 19 18 16 45 45 H 1.09003 * 115.54519 * 34.41810 * 24 13 12 46 46 H 1.09005 * 117.50277 * 0.02562 * 25 24 13 47 47 H 1.09004 * 117.49857 * 145.02215 * 25 24 13 48 48 H 1.09008 * 117.49818 * 214.97963 * 26 24 13 49 49 H 1.09003 * 117.50244 * 359.97438 * 26 24 13 50 50 H 1.08000 * 119.55364 * 180.27368 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.7014 -2.0376 1.4565 7 6 2.1837 -2.6534 2.6005 8 6 2.9794 -1.9213 3.4790 9 6 3.5023 -2.5650 4.7068 10 8 3.2371 -3.7269 4.9439 11 7 4.2722 -1.8618 5.5607 12 6 4.7889 -2.4980 6.7750 13 6 5.6260 -1.4886 7.5631 14 1 6.5076 -1.2161 6.9829 15 7 4.8254 -0.2903 7.8268 16 6 5.4435 0.9130 8.0392 17 1 6.5211 0.9788 8.0120 18 6 4.6849 2.0485 8.2886 19 7 3.3715 1.9683 8.3212 20 14 5.5280 3.6897 8.5791 21 1 5.7019 4.3932 7.2828 22 1 4.6951 4.5206 9.4852 23 1 6.8573 3.4604 9.1999 24 6 6.0617 -2.1130 8.8902 25 6 5.4492 -1.5462 10.1724 26 6 6.9122 -1.2550 9.8290 27 7 3.2683 -0.6506 3.2280 28 6 2.8282 -0.0432 2.1476 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4423 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 1.0819 -2.5791 0.7570 39 1 1.9460 -3.6863 2.8081 40 1 4.4843 -0.9344 5.3713 41 1 3.9554 -2.8373 7.3902 42 1 5.4099 -3.3513 6.5021 43 1 3.8575 -0.3494 7.8509 44 1 2.8414 2.7617 8.4958 45 1 6.2679 -3.1830 8.8610 46 1 4.7354 -0.7287 10.0707 47 1 5.2527 -2.2432 10.9871 48 1 7.6776 -1.7606 10.4179 49 1 7.1616 -0.2459 9.5011 50 1 3.0877 0.9908 1.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480020249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:10 Heat of formation + Delta-G solvation = 8.083667 kcal Electronic energy + Delta-G solvation = -28391.547790 eV Core-core repulsion = 24611.733736 eV Total energy + Delta-G solvation = -3779.814054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.84327 -40.42051 -39.12978 -37.74707 -35.97026 -35.07612 -33.38294 -32.67888 -31.63979 -29.72261 -28.46085 -28.08697 -26.19203 -25.29915 -24.24533 -23.88787 -22.97169 -21.77587 -20.72287 -20.31995 -19.46934 -18.87186 -17.86161 -16.99845 -16.76022 -16.56294 -16.31410 -16.22394 -15.90506 -15.50154 -15.41429 -15.17818 -14.80854 -14.62507 -14.56995 -14.28532 -14.11478 -13.67398 -13.65845 -13.13289 -12.93554 -12.88776 -12.85958 -12.66286 -12.59059 -12.53396 -12.12181 -12.07013 -11.95078 -11.92074 -11.71238 -11.59313 -11.37011 -11.02504 -10.86341 -10.84601 -10.62587 -10.41581 -10.19679 -9.89167 -8.98435 -7.86977 -5.14716 -0.38667 0.24161 1.49070 1.49722 1.56884 1.68132 2.14679 2.59105 2.83570 3.11698 3.15891 3.47949 3.55396 3.69215 3.84651 3.87598 3.93778 3.99164 4.08722 4.09961 4.26826 4.27994 4.33257 4.48120 4.49059 4.58373 4.63423 4.72616 4.78153 4.81321 4.89810 4.91737 4.96009 4.97549 4.98644 5.04937 5.12041 5.17623 5.17730 5.23977 5.32178 5.40871 5.44967 5.47164 5.50753 5.61197 5.66948 5.69892 6.32275 6.43960 6.81894 7.13518 7.40542 8.11057 8.36656 9.35613 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.003182 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.598370 B = 8797.452706 C =10670.380734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.152 4.152 4 C -0.137 4.137 5 C -0.091 4.091 6 C -0.074 4.074 7 C -0.111 4.111 8 C 0.046 3.954 9 C 0.562 3.438 10 O -0.574 6.574 11 N -0.693 5.693 12 C 0.124 3.876 13 C 0.192 3.808 14 H 0.057 0.943 15 N -0.720 5.720 16 C -0.219 4.219 17 H 0.076 0.924 18 C -0.066 4.066 19 N -0.965 5.965 20 Si 0.958 3.042 21 H -0.291 1.291 22 H -0.303 1.303 23 H -0.272 1.272 24 C -0.168 4.168 25 C -0.172 4.172 26 C -0.169 4.169 27 N -0.475 5.475 28 C 0.083 3.917 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.174 0.826 39 H 0.152 0.848 40 H 0.415 0.585 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.373 0.627 44 H 0.246 0.754 45 H 0.118 0.882 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -7.167 -19.013 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.209 4.209 4 C -0.194 4.194 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.132 4.132 8 C -0.091 4.091 9 C 0.348 3.652 10 O -0.454 6.454 11 N -0.343 5.343 12 C 0.000 4.000 13 C 0.083 3.917 14 H 0.075 0.925 15 N -0.360 5.360 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.259 4.259 19 N -0.615 5.615 20 Si 0.789 3.211 21 H -0.219 1.219 22 H -0.230 1.230 23 H -0.197 1.197 24 C -0.189 4.189 25 C -0.209 4.209 26 C -0.206 4.206 27 N -0.186 5.186 28 C -0.076 4.076 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.192 0.808 39 H 0.169 0.831 40 H 0.252 0.748 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.205 0.795 44 H 0.055 0.945 45 H 0.136 0.864 46 H 0.094 0.906 47 H 0.111 0.889 48 H 0.121 0.879 49 H 0.096 0.904 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.080 -7.412 -18.157 19.722 hybrid contribution -0.460 1.182 0.185 1.281 sum -2.540 -6.231 -17.972 19.190 Atomic orbital electron populations 1.21924 0.92342 1.02860 1.02528 1.19579 0.96546 0.95254 0.91104 1.22031 1.01488 0.94471 1.02932 1.21903 1.01024 1.00680 0.95797 1.21408 0.95766 0.94816 0.97312 1.21754 0.97861 0.94158 0.96143 1.22228 0.95227 1.01905 0.93809 1.21060 1.00323 0.91369 0.96339 1.18264 0.78430 0.85416 0.83110 1.90697 1.60780 1.17325 1.76630 1.45903 1.49694 1.16621 1.22057 1.21600 0.97857 0.95741 0.84798 1.20121 0.93185 0.85906 0.92476 0.92463 1.42502 1.05111 1.03639 1.84717 1.19415 0.91435 0.86195 1.38001 0.90645 1.25320 0.95788 1.00632 1.04138 1.69816 1.04692 1.28617 1.58420 0.85364 0.77638 0.81121 0.76998 1.21852 1.23029 1.19663 1.23031 1.04977 0.98603 0.92286 1.22767 0.96876 1.03194 0.98092 1.22842 0.93737 1.00667 1.03377 1.67561 1.21303 1.09183 1.20588 1.23217 0.94697 1.01019 0.88713 0.93542 0.90300 0.91516 0.92094 0.90290 0.92712 0.91544 0.90388 0.92995 0.80834 0.83077 0.74775 0.92569 0.89652 0.79522 0.94499 0.86419 0.90555 0.88945 0.87879 0.90439 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.29 71.98 0.60 -1.02 16 2 C -0.02 -0.32 0.86 -52.93 -0.05 -0.37 16 3 C -0.15 -2.00 7.14 71.98 0.51 -1.48 16 4 C -0.14 -1.39 8.29 71.98 0.60 -0.80 16 5 C -0.09 -1.79 4.77 -19.69 -0.09 -1.88 16 6 C -0.07 -1.41 8.84 22.45 0.20 -1.21 16 7 C -0.11 -2.87 9.63 22.61 0.22 -2.66 16 8 C 0.05 1.53 6.75 41.91 0.28 1.82 16 9 C 0.56 21.19 7.81 86.88 0.68 21.87 16 10 O -0.57 -23.29 16.32 -3.75 -0.06 -23.35 16 11 N -0.69 -26.25 5.38 -465.65 -2.50 -28.75 16 12 C 0.12 4.42 5.21 86.38 0.45 4.87 16 13 C 0.19 7.29 2.86 44.99 0.13 7.42 16 14 H 0.06 2.20 8.08 -2.38 -0.02 2.18 16 15 N -0.72 -33.91 3.08 -322.93 -0.99 -34.90 16 16 C -0.22 -11.35 8.15 84.03 0.69 -10.66 16 17 H 0.08 3.81 6.91 -2.91 -0.02 3.79 16 18 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 19 N -0.96 -57.81 13.06 21.65 0.28 -57.53 16 20 Si 0.96 45.56 29.55 68.60 2.03 47.59 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.17 -5.70 5.70 -10.80 -0.06 -5.76 16 25 C -0.17 -6.43 9.74 30.61 0.30 -6.13 16 26 C -0.17 -5.86 9.87 30.62 0.30 -5.56 16 27 N -0.48 -15.78 9.54 -184.91 -1.76 -17.55 16 28 C 0.08 2.16 10.15 84.82 0.86 3.02 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.66 7.45 -2.39 -0.02 0.64 16 32 H 0.06 0.82 7.53 -2.39 -0.02 0.80 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.83 7.52 -2.39 -0.02 0.81 16 35 H 0.07 0.58 7.45 -2.39 -0.02 0.56 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.17 2.00 7.24 -2.91 -0.02 1.98 16 39 H 0.15 3.67 7.64 -2.91 -0.02 3.65 16 40 H 0.41 16.86 7.47 -92.71 -0.69 16.17 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 43 H 0.37 19.71 7.80 -92.71 -0.72 18.99 16 44 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 45 H 0.12 3.32 8.11 -2.39 -0.02 3.30 16 46 H 0.08 3.57 6.68 -2.38 -0.02 3.55 16 47 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 48 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 49 H 0.08 3.09 6.22 -2.39 -0.01 3.08 16 50 H 0.17 3.92 5.90 -2.91 -0.02 3.90 16 Total: -1.00 -66.40 401.43 2.60 -63.79 By element: Atomic # 1 Polarization: 52.89 SS G_CDS: -0.46 Total: 52.42 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.08 Total: -1.73 kcal Atomic # 7 Polarization: -133.75 SS G_CDS: -4.98 Total: -138.73 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -66.40 2.60 -63.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480020249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.878 kcal (2) G-P(sol) polarization free energy of solvation -66.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds