Wall clock time and date at job start Tue Mar 31 2020 16:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00216 * 2 1 4 4 C 1.46898 * 110.99756 * 123.95923 * 2 1 3 5 5 C 1.52995 * 109.47175 * 169.99591 * 4 2 1 6 6 C 1.53119 * 109.52454 * 174.99743 * 5 4 2 7 7 C 1.53039 * 109.28203 * 177.56005 * 6 5 4 8 8 N 1.46839 * 109.52313 * 300.82465 * 7 6 5 9 9 C 1.39546 * 111.00074 * 185.84021 * 8 7 6 10 10 C 1.39118 * 119.99260 * 359.71749 * 9 8 7 11 11 C 1.37871 * 120.01124 * 179.77000 * 10 9 8 12 12 C 1.39193 * 119.98974 * 0.53079 * 11 10 9 13 13 N 1.39405 * 120.01174 * 179.69821 * 12 11 10 14 14 C 1.34778 * 120.00337 * 213.29236 * 13 12 11 15 15 O 1.21789 * 119.99992 * 5.12681 * 14 13 12 16 16 C 1.41642 * 119.99845 * 185.13323 * 14 13 12 17 17 H 1.08004 * 120.00323 * 6.24980 * 16 14 13 18 18 C 1.40143 * 119.99778 * 186.25676 * 16 14 13 19 19 N 1.30625 * 120.00148 * 353.71365 * 18 16 14 20 20 Si 1.86806 * 119.99805 * 173.71757 * 18 16 14 21 21 H 1.48500 * 109.46923 * 94.98281 * 20 18 16 22 22 H 1.48504 * 109.46876 * 214.98019 * 20 18 16 23 23 H 1.48492 * 109.47136 * 334.98376 * 20 18 16 24 24 C 1.39193 * 119.98452 * 359.72859 * 12 11 10 25 25 C 1.37875 * 119.98993 * 359.97438 * 24 12 11 26 26 C 1.46849 * 111.20016 * 61.73619 * 8 7 6 27 27 C 1.53033 * 109.52436 * 298.26009 * 26 8 7 28 28 H 1.08996 * 109.47261 * 296.04516 * 1 2 3 29 29 H 1.09007 * 109.46956 * 56.04081 * 1 2 3 30 30 H 1.08993 * 109.47588 * 176.04104 * 1 2 3 31 31 H 1.09003 * 109.46824 * 183.95091 * 3 2 1 32 32 H 1.08998 * 109.47338 * 303.95615 * 3 2 1 33 33 H 1.09004 * 109.47013 * 63.95502 * 3 2 1 34 34 H 1.08997 * 109.47365 * 49.99231 * 4 2 1 35 35 H 1.09000 * 109.46989 * 289.99755 * 4 2 1 36 36 H 1.09004 * 109.52319 * 54.87199 * 5 4 2 37 37 H 1.08999 * 109.50556 * 57.61721 * 6 5 4 38 38 H 1.09005 * 109.53969 * 297.52093 * 6 5 4 39 39 H 1.09000 * 109.46385 * 180.80170 * 7 6 5 40 40 H 1.08998 * 109.45113 * 60.83002 * 7 6 5 41 41 H 1.08001 * 119.99336 * 0.02562 * 10 9 8 42 42 H 1.08004 * 120.00894 * 180.25279 * 11 10 9 43 43 H 0.97002 * 119.99940 * 33.29095 * 13 12 11 44 44 H 0.96997 * 119.99746 * 180.02562 * 19 18 16 45 45 H 1.07995 * 120.00572 * 179.97438 * 24 12 11 46 46 H 1.07997 * 120.00039 * 180.02562 * 25 24 12 47 47 H 1.08998 * 109.45663 * 58.27972 * 26 8 7 48 48 H 1.09005 * 109.45934 * 178.24032 * 26 8 7 49 49 H 1.09006 * 109.50539 * 299.23411 * 27 26 8 50 50 H 1.08996 * 109.53459 * 179.13864 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5043 -0.9556 0.9703 6 6 4.0745 -1.6440 2.2134 7 6 5.5726 -1.8857 2.0149 8 7 5.7812 -2.7260 0.8289 9 6 7.1255 -3.0750 0.6934 10 6 8.0586 -2.6211 1.6201 11 6 9.3862 -2.9696 1.4892 12 6 9.7945 -3.7665 0.4236 13 7 11.1377 -4.1139 0.2873 14 6 11.6744 -4.2619 -0.9401 15 8 11.0132 -4.0019 -1.9292 16 6 13.0074 -4.7200 -1.0796 17 1 13.5600 -5.0466 -0.2110 18 6 13.6094 -4.7495 -2.3448 19 7 12.9054 -4.4723 -3.4097 20 14 15.4186 -5.1852 -2.5084 21 1 15.5541 -6.6347 -2.8010 22 1 16.0190 -4.3984 -3.6156 23 1 16.1207 -4.8687 -1.2388 24 6 8.8615 -4.2160 -0.5064 25 6 7.5332 -3.8722 -0.3715 26 6 5.2841 -2.0649 -0.3845 27 6 3.7775 -1.8287 -0.2575 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3634 -1.0251 -0.0709 31 1 3.0828 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5088 -1.7407 1.1756 35 1 1.7975 -0.2249 2.0627 36 1 3.9813 0.0160 0.8409 37 1 3.5691 -2.5977 2.3653 38 1 3.9210 -1.0079 3.0852 39 1 5.9788 -2.3886 2.8925 40 1 6.0792 -0.9305 1.8768 41 1 7.7424 -1.9991 2.4444 42 1 10.1099 -2.6205 2.2109 43 1 11.6861 -4.2491 1.0759 44 1 13.3221 -4.4931 -4.2854 45 1 9.1781 -4.8340 -1.3336 46 1 6.8091 -4.2212 -1.0927 47 1 5.7923 -1.1090 -0.5112 48 1 5.4809 -2.6982 -1.2496 49 1 3.2673 -2.7853 -0.1446 50 1 3.4111 -1.3242 -1.1515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153864310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:26 Heat of formation + Delta-G solvation = -0.466040 kcal Electronic energy + Delta-G solvation = -27996.983456 eV Core-core repulsion = 24216.798659 eV Total energy + Delta-G solvation = -3780.184797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.18928 -38.82478 -37.79258 -36.39441 -34.10733 -32.75665 -32.13309 -31.37560 -29.97146 -28.74160 -27.92642 -27.19349 -25.75981 -24.04403 -23.41185 -21.95056 -21.22993 -20.94312 -19.91757 -19.35022 -17.50235 -17.12001 -16.08822 -15.74975 -15.63192 -15.52405 -15.27542 -15.04637 -14.44127 -14.25597 -14.15649 -13.83855 -13.61020 -13.20993 -13.04352 -12.88835 -12.71849 -12.58948 -12.54537 -12.34308 -12.08828 -12.00857 -11.82272 -11.62358 -11.59921 -11.27074 -11.18281 -11.09350 -10.82319 -10.64562 -10.56415 -10.40144 -10.34200 -10.26017 -9.47220 -8.96121 -8.66633 -8.38989 -8.27266 -7.65887 -6.62872 -6.36258 -4.87162 2.03825 2.08422 3.05626 3.13482 3.17416 3.61582 3.93156 4.00225 4.31026 4.49566 4.60597 4.64871 4.72993 4.78452 4.84818 4.99842 5.11915 5.13289 5.16388 5.26284 5.32734 5.34918 5.41170 5.46982 5.49992 5.52221 5.52630 5.60320 5.72497 5.73209 5.76204 5.84569 5.88264 6.01708 6.04774 6.10433 6.16468 6.32802 6.35143 6.66647 6.68839 6.69984 6.71908 6.79481 7.20531 7.24966 7.27625 7.46510 7.71418 7.92806 8.08577 8.30367 8.82492 9.34507 10.40704 10.62512 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.002005 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.319972 B =13959.465286 C =14502.284112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.021 3.979 4 C 0.061 3.939 5 C -0.087 4.087 6 C -0.112 4.112 7 C 0.055 3.945 8 N -0.483 5.483 9 C 0.057 3.943 10 C -0.148 4.148 11 C -0.157 4.157 12 C 0.175 3.825 13 N -0.703 5.703 14 C 0.545 3.455 15 O -0.568 6.568 16 C -0.541 4.541 17 H 0.070 0.930 18 C 0.088 3.912 19 N -0.747 5.747 20 Si 0.911 3.089 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.106 4.106 25 C -0.115 4.115 26 C 0.055 3.945 27 C -0.101 4.101 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.390 0.610 44 H 0.272 0.728 45 H 0.139 0.861 46 H 0.117 0.883 47 H 0.037 0.963 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.844 8.075 10.171 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.067 4.067 5 C -0.106 4.106 6 C -0.150 4.150 7 C -0.072 4.072 8 N -0.200 5.200 9 C -0.040 4.040 10 C -0.169 4.169 11 C -0.180 4.180 12 C 0.076 3.924 13 N -0.346 5.346 14 C 0.354 3.646 15 O -0.452 6.452 16 C -0.576 4.576 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.375 5.375 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.070 4.070 27 C -0.139 4.139 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.223 0.777 44 H 0.083 0.917 45 H 0.157 0.843 46 H 0.135 0.865 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.412 7.609 8.815 23.500 hybrid contribution 1.383 0.871 1.057 1.946 sum -19.029 8.480 9.872 23.054 Atomic orbital electron populations 1.22373 0.87432 1.02263 1.00295 1.61946 1.07617 1.13866 1.43398 1.22444 1.01318 0.88730 1.00239 1.22198 0.95532 0.98138 0.90820 1.21256 0.94153 0.99303 0.95839 1.21640 0.95362 1.00992 0.97010 1.22153 0.96005 0.95475 0.93593 1.59138 1.15613 1.41548 1.03711 1.18695 0.87144 1.00773 0.97425 1.20870 0.92596 1.02507 1.00927 1.20730 0.95847 1.00770 1.00629 1.17967 0.85715 0.93985 0.94728 1.44119 1.07304 1.72536 1.10672 1.17003 0.88136 0.79203 0.80289 1.90653 1.63046 1.55241 1.36245 1.20032 0.98188 1.44888 0.94500 0.91207 1.25759 0.99613 0.92872 0.95208 1.70014 1.36359 1.32379 0.98730 0.86295 0.82297 0.79019 0.78865 1.19585 1.20208 1.18663 1.21237 0.90992 1.00451 1.00102 1.20611 0.95666 0.99580 0.97669 1.22273 0.95342 0.97430 0.91996 1.21545 0.94559 0.99809 0.97956 0.95906 0.91425 0.91331 0.90952 0.91492 0.95855 0.90626 0.95006 0.91322 0.90940 0.91721 0.90179 0.94261 0.86565 0.86767 0.77672 0.91693 0.84289 0.86533 0.94512 0.90105 0.91386 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.07 0.57 0.74 16 2 N -0.54 -4.44 4.54 -251.27 -1.14 -5.58 16 3 C 0.02 0.15 9.33 60.06 0.56 0.71 16 4 C 0.06 0.48 4.35 -3.83 -0.02 0.47 16 5 C -0.09 -0.77 2.17 -90.50 -0.20 -0.97 16 6 C -0.11 -1.00 5.38 -26.65 -0.14 -1.15 16 7 C 0.06 0.62 4.14 -3.84 -0.02 0.61 16 8 N -0.48 -6.68 4.70 -171.06 -0.80 -7.48 16 9 C 0.06 0.95 5.65 -83.69 -0.47 0.47 16 10 C -0.15 -2.40 8.81 -39.39 -0.35 -2.75 16 11 C -0.16 -2.84 9.96 -39.36 -0.39 -3.23 16 12 C 0.18 3.78 6.28 -83.71 -0.53 3.25 16 13 N -0.70 -16.18 5.31 -12.42 -0.07 -16.24 16 14 C 0.54 15.27 7.29 -14.96 -0.11 15.16 16 15 O -0.57 -17.87 12.56 5.11 0.06 -17.81 16 16 C -0.54 -14.84 9.30 -37.57 -0.35 -15.19 16 17 H 0.07 1.74 7.86 -52.48 -0.41 1.33 16 18 C 0.09 2.39 5.49 -17.35 -0.10 2.29 16 19 N -0.75 -21.67 11.75 55.56 0.65 -21.01 16 20 Si 0.91 19.44 29.56 -169.99 -5.03 14.41 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 24 C -0.11 -2.34 8.64 -39.36 -0.34 -2.68 16 25 C -0.11 -2.13 9.15 -39.38 -0.36 -2.49 16 26 C 0.06 0.71 5.26 -3.83 -0.02 0.69 16 27 C -0.10 -1.04 5.24 -26.66 -0.14 -1.18 16 28 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.07 0.56 6.37 -51.93 -0.33 0.23 16 32 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 33 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 36 H 0.07 0.65 6.33 -51.93 -0.33 0.32 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.89 6.99 -51.93 -0.36 0.53 16 40 H 0.04 0.45 7.72 -51.93 -0.40 0.05 16 41 H 0.12 1.58 5.80 -52.49 -0.30 1.27 16 42 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 43 H 0.39 7.72 8.77 -40.82 -0.36 7.36 16 44 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 45 H 0.14 3.47 6.39 -52.49 -0.34 3.13 16 46 H 0.12 1.99 7.15 -52.49 -0.38 1.61 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 1.09 6.70 -51.93 -0.35 0.74 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 0.81 7.84 -51.93 -0.41 0.40 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -32.45 389.41 -11.00 -43.45 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.16 Total: 9.65 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.39 Total: -5.25 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -1.36 Total: -50.32 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.06 Total: -17.81 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.45 -11.00 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153864310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.981 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds