Wall clock time and date at job start Tue Mar 31 2020 16:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00446 * 2 1 4 4 H 1.48498 * 109.47410 * 240.00051 * 3 2 1 5 5 H 1.48504 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47189 * 119.99767 * 3 2 1 7 7 C 1.38957 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99972 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99709 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00287 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99419 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.46643 * 179.97438 * 12 10 9 14 14 C 1.39795 * 119.99898 * 179.97438 * 13 12 10 15 15 C 1.38874 * 120.06880 * 359.72662 * 14 13 12 16 16 C 1.38117 * 119.94856 * 180.25476 * 15 14 13 17 17 C 1.38362 * 120.08710 * 0.04488 * 16 15 14 18 18 Br 1.89105 * 119.93526 * 179.97438 * 17 16 15 19 19 C 1.38352 * 120.13568 * 359.95178 * 17 16 15 20 20 C 1.38207 * 120.05004 * 0.02943 * 19 17 16 21 21 Cl 1.73597 * 120.04375 * 179.97438 * 20 19 17 22 22 H 0.97003 * 119.99372 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00114 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.47272 * 60.00072 * 12 10 9 25 25 H 1.08999 * 109.46962 * 299.99293 * 12 10 9 26 26 H 0.97004 * 120.00165 * 0.02562 * 13 12 10 27 27 H 1.07998 * 120.02431 * 0.24986 * 15 14 13 28 28 H 1.08003 * 119.95849 * 180.02562 * 16 15 14 29 29 H 1.07993 * 119.97276 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0011 12 6 1.2435 -4.8630 -0.0022 13 7 2.1955 -5.9765 -0.0027 14 6 1.7294 -7.2945 -0.0027 15 6 0.3644 -7.5498 0.0034 16 6 -0.0933 -8.8530 0.0087 17 6 0.8064 -9.9041 0.0088 18 35 0.1750 -11.6867 0.0167 19 6 2.1671 -9.6538 0.0026 20 6 2.6312 -8.3520 -0.0031 21 17 4.3386 -8.0381 -0.0102 22 1 -0.4849 0.8401 -0.0004 23 1 0.3533 -2.3906 -0.0016 24 1 0.6171 -4.9205 -0.8924 25 1 0.6166 -4.9209 0.8876 26 1 3.1492 -5.7993 -0.0022 27 1 -0.3387 -6.7301 0.0042 28 1 -1.1549 -9.0517 0.0131 29 1 2.8669 -10.4763 0.0022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037392415.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:57 Heat of formation + Delta-G solvation = -19.620661 kcal Electronic energy + Delta-G solvation = -17173.329664 eV Core-core repulsion = 13975.111850 eV Total energy + Delta-G solvation = -3198.217815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.967 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.77291 -38.40844 -36.44498 -35.46064 -34.08023 -31.63722 -31.38561 -30.96900 -29.01900 -26.58199 -24.56224 -22.95862 -21.60427 -19.55985 -18.22270 -17.85319 -16.57340 -15.82378 -15.59930 -15.04332 -14.73812 -14.33837 -14.20750 -13.90103 -13.86774 -13.57660 -12.47927 -12.38304 -12.10563 -11.96642 -11.67845 -11.55102 -11.19157 -10.94340 -10.89785 -10.55466 -10.38139 -10.37032 -9.78749 -9.68426 -9.01476 -8.72629 -8.17969 -7.45754 -6.58678 -4.00644 1.04368 1.16067 1.53878 2.20189 3.09128 3.17701 3.20247 3.36087 3.45533 3.64777 4.06057 4.58622 4.71676 4.86425 5.08733 5.10791 5.22307 5.51974 5.58150 5.72029 5.72172 5.91133 5.98672 6.08649 6.41777 7.12177 7.39591 7.74705 7.86954 8.37196 8.97745 9.30301 9.78445 10.57998 Molecular weight = 331.97amu Principal moments of inertia in cm(-1) A = 0.028990 B = 0.002484 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.602247 B =11267.707396 C =12218.148790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.592 6.592 12 C 0.107 3.893 13 N -0.709 5.709 14 C 0.255 3.745 15 C -0.191 4.191 16 C -0.031 4.031 17 C -0.153 4.153 18 Br -0.060 7.060 19 C -0.029 4.029 20 C -0.118 4.118 21 Cl -0.061 7.061 22 H 0.275 0.725 23 H 0.395 0.605 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.418 0.582 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -21.125 0.015 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.211 3.789 11 O -0.478 6.478 12 C -0.022 4.022 13 N -0.338 5.338 14 C 0.144 3.856 15 C -0.215 4.215 16 C -0.052 4.052 17 C -0.235 4.235 18 Br 0.025 6.975 19 C -0.050 4.050 20 C -0.151 4.151 21 Cl -0.033 7.033 22 H 0.085 0.915 23 H 0.229 0.771 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.259 0.741 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.594 -21.334 0.017 21.491 hybrid contribution 0.385 1.369 -0.005 1.422 sum -2.210 -19.965 0.013 20.087 Atomic orbital electron populations 1.69596 1.06014 1.28716 1.49145 1.25321 0.95683 0.99957 0.96626 0.85860 0.78799 0.80037 0.79228 1.19735 1.20794 1.19740 1.19688 0.93479 0.81961 1.48448 0.87714 1.41772 1.09383 1.04444 1.62637 1.19634 0.88353 0.84840 0.86026 1.90525 1.13689 1.86616 1.57006 1.21093 0.92114 0.86486 1.02463 1.44848 1.10753 1.00838 1.77327 1.17711 0.92264 0.84439 0.91168 1.20658 0.92824 0.97329 1.10668 1.20891 0.99394 0.90781 0.94134 1.21184 0.94525 0.90694 1.17116 1.96647 1.88452 1.14213 1.98189 1.20645 0.94028 0.94862 0.95461 1.20197 0.84831 0.93186 1.16890 1.98366 1.11794 1.95700 1.97401 0.91489 0.77106 0.90024 0.90018 0.74113 0.84118 0.84694 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 13.05 55.50 0.72 -22.38 15 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 15 3 Si 0.93 20.16 29.55 -169.99 -5.02 15.14 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 7 C -0.31 -8.13 9.68 -14.93 -0.14 -8.28 15 8 H 0.11 2.92 7.16 -52.49 -0.38 2.55 15 9 N -0.55 -12.98 5.29 -10.96 -0.06 -13.04 15 10 C 0.43 9.39 7.85 -10.98 -0.09 9.30 15 11 O -0.59 -15.15 15.24 5.56 0.08 -15.07 15 12 C 0.11 1.72 5.39 -5.19 -0.03 1.69 15 13 N -0.71 -11.34 5.66 -59.76 -0.34 -11.68 15 14 C 0.26 3.53 6.65 -83.71 -0.56 2.98 15 15 C -0.19 -2.24 9.31 -39.39 -0.37 -2.61 15 16 C -0.03 -0.33 9.78 -39.58 -0.39 -0.72 15 17 C -0.15 -1.70 6.22 -39.49 -0.25 -1.94 15 18 Br -0.06 -0.58 33.70 -68.01 -2.29 -2.87 15 19 C -0.03 -0.34 9.56 -39.55 -0.38 -0.71 15 20 C -0.12 -1.57 6.34 -39.32 -0.25 -1.82 15 21 Cl -0.06 -0.83 27.59 -51.86 -1.43 -2.26 15 22 H 0.28 6.75 8.31 -40.82 -0.34 6.41 15 23 H 0.40 8.82 7.90 -40.82 -0.32 8.49 15 24 H 0.08 1.15 7.96 -51.93 -0.41 0.74 15 25 H 0.08 1.15 7.94 -51.93 -0.41 0.74 15 26 H 0.42 7.44 6.11 -40.82 -0.25 7.19 15 27 H 0.14 1.44 6.74 -52.49 -0.35 1.09 15 28 H 0.14 1.14 8.06 -52.48 -0.42 0.71 15 29 H 0.14 1.39 8.06 -52.49 -0.42 0.97 15 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -28.26 295.92 -8.52 -36.78 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -2.11 Total: 12.43 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.54 Total: -1.51 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.33 Total: -47.10 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.07 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.43 Total: -2.26 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.29 Total: -2.87 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.26 -8.52 -36.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037392415.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.159 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds