Wall clock time and date at job start Tue Mar 31 2020 16:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00446 * 2 1 4 4 H 1.48498 * 109.47410 * 240.00051 * 3 2 1 5 5 H 1.48504 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47189 * 119.99767 * 3 2 1 7 7 C 1.38957 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99972 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99709 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00287 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99419 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.46643 * 179.97438 * 12 10 9 14 14 C 1.39795 * 119.99898 * 179.97438 * 13 12 10 15 15 C 1.38874 * 120.06880 * 359.72662 * 14 13 12 16 16 C 1.38117 * 119.94856 * 180.25476 * 15 14 13 17 17 C 1.38362 * 120.08710 * 0.04488 * 16 15 14 18 18 Br 1.89105 * 119.93526 * 179.97438 * 17 16 15 19 19 C 1.38352 * 120.13568 * 359.95178 * 17 16 15 20 20 C 1.38207 * 120.05004 * 0.02943 * 19 17 16 21 21 Cl 1.73597 * 120.04375 * 179.97438 * 20 19 17 22 22 H 0.97003 * 119.99372 * 0.02562 * 1 2 3 23 23 H 0.96998 * 120.00114 * 359.97438 * 9 7 2 24 24 H 1.09002 * 109.47272 * 60.00072 * 12 10 9 25 25 H 1.08999 * 109.46962 * 299.99293 * 12 10 9 26 26 H 0.97004 * 120.00165 * 0.02562 * 13 12 10 27 27 H 1.07998 * 120.02431 * 0.24986 * 15 14 13 28 28 H 1.08003 * 119.95849 * 180.02562 * 16 15 14 29 29 H 1.07993 * 119.97276 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0011 12 6 1.2435 -4.8630 -0.0022 13 7 2.1955 -5.9765 -0.0027 14 6 1.7294 -7.2945 -0.0027 15 6 0.3644 -7.5498 0.0034 16 6 -0.0933 -8.8530 0.0087 17 6 0.8064 -9.9041 0.0088 18 35 0.1750 -11.6867 0.0167 19 6 2.1671 -9.6538 0.0026 20 6 2.6312 -8.3520 -0.0031 21 17 4.3386 -8.0381 -0.0102 22 1 -0.4849 0.8401 -0.0004 23 1 0.3533 -2.3906 -0.0016 24 1 0.6171 -4.9205 -0.8924 25 1 0.6166 -4.9209 0.8876 26 1 3.1492 -5.7993 -0.0022 27 1 -0.3387 -6.7301 0.0042 28 1 -1.1549 -9.0517 0.0131 29 1 2.8669 -10.4763 0.0022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037392415.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:57 Heat of formation + Delta-G solvation = -37.082464 kcal Electronic energy + Delta-G solvation = -17174.086865 eV Core-core repulsion = 13975.111850 eV Total energy + Delta-G solvation = -3198.975015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.967 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87331 -40.02278 -37.45134 -36.71042 -35.89342 -33.39883 -32.48783 -31.88050 -30.15637 -27.92812 -26.20269 -23.96261 -22.62918 -21.20360 -20.04461 -19.07408 -17.69330 -17.29497 -16.74591 -16.43172 -16.41690 -15.84416 -15.29439 -15.04277 -15.00912 -14.85125 -13.95640 -13.90455 -13.54037 -13.00349 -12.94646 -12.91550 -12.48921 -12.47221 -12.14311 -11.97351 -11.89050 -11.57482 -11.19133 -10.71806 -10.55934 -10.09841 -9.93012 -8.52016 -8.50627 -6.01408 0.13021 0.22430 0.66422 1.21990 1.37183 1.42343 1.52199 1.91690 2.12185 2.34402 2.53502 3.12367 3.15519 3.67847 4.01180 4.12841 4.21068 4.34119 4.38020 4.45661 4.70656 4.80136 5.03265 5.18516 5.37182 5.51684 5.86349 6.08302 6.49135 6.51483 7.04353 7.44324 7.97132 8.64239 Molecular weight = 331.97amu Principal moments of inertia in cm(-1) A = 0.028990 B = 0.002484 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.602247 B =11267.707396 C =12218.148790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.006 4.006 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.557 5.557 10 C 0.426 3.574 11 O -0.631 6.631 12 C 0.122 3.878 13 N -0.725 5.725 14 C 0.236 3.764 15 C -0.188 4.188 16 C -0.027 4.027 17 C -0.154 4.154 18 Br -0.044 7.044 19 C -0.031 4.031 20 C -0.129 4.129 21 Cl -0.072 7.072 22 H 0.280 0.720 23 H 0.401 0.599 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.406 0.594 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -22.080 0.020 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.207 4.207 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.098 0.902 9 N -0.193 5.193 10 C 0.214 3.786 11 O -0.520 6.520 12 C -0.006 4.006 13 N -0.355 5.355 14 C 0.128 3.872 15 C -0.211 4.211 16 C -0.047 4.047 17 C -0.235 4.235 18 Br 0.041 6.959 19 C -0.052 4.052 20 C -0.162 4.162 21 Cl -0.044 7.044 22 H 0.090 0.910 23 H 0.236 0.764 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.245 0.755 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.138 -22.335 0.022 22.715 hybrid contribution 0.825 1.478 -0.006 1.693 sum -3.314 -20.857 0.016 21.118 Atomic orbital electron populations 1.69645 1.06738 1.29660 1.49119 1.26025 0.96542 1.02364 0.95788 0.84995 0.77821 0.76662 0.78927 1.19766 1.19378 1.19774 1.19635 0.92818 0.83814 1.50639 0.90162 1.41793 1.09588 1.04407 1.63492 1.20650 0.88190 0.86325 0.83474 1.90499 1.15867 1.87603 1.57985 1.21005 0.91529 0.83169 1.04851 1.44794 1.09953 1.01546 1.79162 1.17924 0.93305 0.83494 0.92503 1.20909 0.92071 0.98458 1.09687 1.21199 1.00654 0.90071 0.92787 1.21414 0.94442 0.91786 1.15896 1.96676 1.88154 1.13002 1.98101 1.20802 0.94727 0.94547 0.95119 1.20365 0.84360 0.93827 1.17609 1.98360 1.12712 1.95798 1.97491 0.91028 0.76401 0.87461 0.87448 0.75502 0.82396 0.82110 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.65 13.05 21.67 0.28 -46.36 15 2 C -0.01 -0.31 5.50 84.93 0.47 0.16 15 3 Si 0.99 41.18 29.55 68.60 2.03 43.21 15 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.34 -18.39 9.68 84.04 0.81 -17.57 15 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 15 9 N -0.56 -26.66 5.29 -306.99 -1.62 -28.28 15 10 C 0.43 18.89 7.85 87.66 0.69 19.58 15 11 O -0.63 -33.17 15.24 -3.04 -0.05 -33.21 15 12 C 0.12 3.76 5.39 85.63 0.46 4.22 15 13 N -0.73 -22.69 5.66 -342.97 -1.94 -24.64 15 14 C 0.24 6.21 6.65 38.20 0.25 6.46 15 15 C -0.19 -3.89 9.31 22.39 0.21 -3.68 15 16 C -0.03 -0.48 9.78 22.27 0.22 -0.26 15 17 C -0.15 -3.01 6.22 22.33 0.14 -2.87 15 18 Br -0.04 -0.75 33.70 -20.37 -0.69 -1.43 15 19 C -0.03 -0.67 9.56 22.29 0.21 -0.46 15 20 C -0.13 -3.30 6.34 22.44 0.14 -3.16 15 21 Cl -0.07 -1.95 27.59 -2.72 -0.08 -2.03 15 22 H 0.28 13.47 8.31 -92.71 -0.77 12.69 15 23 H 0.40 17.85 7.90 -92.71 -0.73 17.12 15 24 H 0.11 2.77 7.96 -2.39 -0.02 2.75 15 25 H 0.11 2.77 7.94 -2.39 -0.02 2.75 15 26 H 0.41 14.66 6.11 -92.71 -0.57 14.10 15 27 H 0.16 2.67 6.74 -2.91 -0.02 2.66 15 28 H 0.16 2.06 8.06 -2.91 -0.02 2.03 15 29 H 0.15 2.78 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -61.19 295.92 1.47 -59.72 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.07 Total: 30.61 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 3.61 Total: 2.41 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -3.28 Total: -99.28 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.05 Total: -33.21 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -0.69 Total: -1.43 kcal Total: -61.19 1.47 -59.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037392415.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.634 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds