Wall clock time and date at job start Tue Mar 31 2020 16:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46911 * 110.99672 * 2 1 4 4 C 1.46899 * 111.00214 * 123.94831 * 2 1 3 5 5 H 1.09002 * 109.46814 * 34.67775 * 4 2 1 6 6 C 1.53001 * 109.47415 * 274.68017 * 4 2 1 7 7 N 1.46897 * 109.47193 * 55.95405 * 6 4 2 8 8 C 1.46902 * 111.00116 * 171.74243 * 7 6 4 9 9 C 1.50702 * 109.47164 * 179.97438 * 8 7 6 10 10 C 1.38287 * 119.92645 * 269.72664 * 9 8 7 11 11 C 1.38101 * 120.07284 * 179.72219 * 10 9 8 12 12 C 1.38913 * 119.92492 * 0.55326 * 11 10 9 13 13 N 1.39680 * 120.07112 * 179.69865 * 12 11 10 14 14 C 1.46503 * 119.99616 * 180.02562 * 13 12 11 15 15 C 1.46497 * 120.00098 * 0.02562 * 13 12 11 16 16 C 1.50699 * 109.46960 * 90.00052 * 15 13 12 17 17 H 1.08005 * 120.00132 * 359.97438 * 16 15 13 18 18 C 1.37882 * 119.99972 * 179.97438 * 16 15 13 19 19 N 1.31519 * 119.99650 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00206 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47109 * 59.99665 * 20 18 16 22 22 H 1.48500 * 109.47436 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46858 * 299.99968 * 20 18 16 24 24 C 1.38913 * 119.85077 * 359.72165 * 12 11 10 25 25 C 1.38098 * 119.92249 * 0.02562 * 24 12 11 26 26 C 1.52992 * 109.47313 * 154.67529 * 4 2 1 27 27 C 1.52998 * 117.49829 * 2.81111 * 26 4 2 28 28 C 1.53006 * 117.50127 * 294.15249 * 26 4 2 29 29 H 1.09004 * 109.47381 * 51.38584 * 1 2 3 30 30 H 1.09003 * 109.47538 * 291.38494 * 1 2 3 31 31 H 1.09005 * 109.46919 * 171.38389 * 1 2 3 32 32 H 1.08994 * 109.47239 * 63.10500 * 3 2 1 33 33 H 1.09000 * 109.46758 * 183.11084 * 3 2 1 34 34 H 1.08994 * 109.46904 * 303.10604 * 3 2 1 35 35 H 1.08994 * 109.46956 * 175.95606 * 6 4 2 36 36 H 1.09000 * 109.47186 * 295.95509 * 6 4 2 37 37 H 1.00899 * 111.00342 * 295.70071 * 7 6 4 38 38 H 1.08998 * 109.47320 * 300.00194 * 8 7 6 39 39 H 1.09001 * 109.46713 * 60.00058 * 8 7 6 40 40 H 1.07996 * 119.96194 * 359.97438 * 10 9 8 41 41 H 1.07999 * 120.03467 * 180.27007 * 11 10 9 42 42 H 1.09000 * 109.47001 * 90.00077 * 14 13 12 43 43 H 1.08999 * 109.46998 * 210.00053 * 14 13 12 44 44 H 1.09000 * 109.47004 * 330.00447 * 14 13 12 45 45 H 1.09000 * 109.46604 * 209.99422 * 15 13 12 46 46 H 1.08999 * 109.47445 * 329.99581 * 15 13 12 47 47 H 0.97002 * 119.99343 * 179.97438 * 19 18 16 48 48 H 1.07998 * 120.03483 * 179.97438 * 24 12 11 49 49 H 1.08008 * 119.96220 * 179.97438 * 25 24 12 50 50 H 1.09002 * 115.54936 * 148.47547 * 26 4 2 51 51 H 1.09004 * 117.50202 * 0.02562 * 27 26 4 52 52 H 1.09002 * 117.50261 * 145.01942 * 27 26 4 53 53 H 1.09000 * 117.49899 * 214.97704 * 28 26 4 54 54 H 1.09001 * 117.49568 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.3367 -1.6094 1.3437 6 6 2.0684 0.1373 2.3705 7 7 0.7423 0.7103 2.6369 8 6 0.7255 1.4245 3.9205 9 6 -0.6477 1.9978 4.1585 10 6 -0.9496 3.2723 3.7149 11 6 -2.2088 3.7985 3.9263 12 6 -3.1691 3.0503 4.5956 13 7 -4.4417 3.5820 4.8166 14 6 -5.4530 2.7917 5.5231 15 6 -4.7652 4.9296 4.3419 16 6 -5.3172 4.8501 2.9420 17 1 -5.4168 3.8915 2.4544 18 6 -5.6952 6.0010 2.2835 19 7 -5.5745 7.1682 2.8775 20 14 -6.3789 5.9026 0.5479 21 1 -7.6075 5.0683 0.5464 22 1 -6.7080 7.2685 0.0673 23 1 -5.3651 5.2923 -0.3495 24 6 -2.8607 1.7726 5.0449 25 6 -1.6011 1.2505 4.8255 26 6 3.3954 -1.2826 0.8004 27 6 3.9917 -0.8780 -0.5492 28 6 3.5160 -2.3151 -0.3223 29 1 -0.3634 0.6414 -0.8030 30 1 -0.3634 0.3747 0.9569 31 1 -0.3633 -1.0161 -0.1540 32 1 1.6916 1.8773 0.9164 33 1 3.0836 1.3430 -0.0558 34 1 1.6015 1.9118 -0.8608 35 1 2.3907 -0.4484 3.2313 36 1 2.7821 0.9412 2.1903 37 1 0.4514 1.3147 1.8830 38 1 0.9751 0.7323 4.7247 39 1 1.4569 2.2323 3.8964 40 1 -0.2011 3.8552 3.1989 41 1 -2.4453 4.7922 3.5757 42 1 -5.3847 2.9875 6.5932 43 1 -6.4450 3.0681 5.1657 44 1 -5.2816 1.7317 5.3361 45 1 -5.5088 5.3781 5.0008 46 1 -3.8630 5.5414 4.3426 47 1 -5.8401 7.9779 2.4141 48 1 -3.6048 1.1885 5.5659 49 1 -1.3605 0.2573 5.1750 50 1 4.0784 -1.3753 1.6449 51 1 3.3868 -0.2432 -1.1968 52 1 5.0670 -0.7048 -0.5928 53 1 4.2785 -3.0868 -0.2167 54 1 2.5978 -2.6264 -0.8204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069782157.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:43 Heat of formation + Delta-G solvation = 74.121102 kcal Electronic energy + Delta-G solvation = -28683.247779 eV Core-core repulsion = 25042.130417 eV Total energy + Delta-G solvation = -3641.117361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.75612 -40.27055 -37.79188 -36.77106 -35.36877 -34.65093 -31.90697 -31.75482 -29.90994 -29.50785 -28.59977 -27.22827 -25.83744 -24.35982 -23.55536 -23.08850 -23.00694 -22.78902 -21.12321 -20.26523 -18.64363 -18.25619 -17.62769 -16.96833 -16.85340 -16.43207 -16.25091 -15.71077 -15.61994 -15.44032 -15.33292 -14.96123 -14.72389 -14.51527 -14.32003 -14.08441 -13.88208 -13.70394 -13.27343 -13.25225 -13.15962 -13.02730 -12.87676 -12.76606 -12.66170 -12.55121 -12.53946 -12.30440 -12.21017 -12.09533 -11.94792 -11.78985 -11.72226 -11.42070 -11.01947 -10.73106 -10.65194 -10.44334 -9.69124 -9.43717 -9.06037 -8.37170 -7.81605 -6.38521 0.68729 0.81815 1.36424 1.37920 1.46351 2.33129 2.62099 2.91567 2.94384 3.05085 3.17050 3.44028 3.90809 4.05189 4.07427 4.12420 4.18991 4.23608 4.34948 4.37275 4.38132 4.42013 4.47372 4.48239 4.57163 4.63028 4.67464 4.70068 4.73209 4.85218 4.85578 4.90819 4.91259 4.95530 4.99822 5.03562 5.06361 5.11107 5.18394 5.19016 5.23630 5.31303 5.38530 5.52234 5.57488 5.64975 5.68700 5.89392 6.04652 6.06008 6.12423 6.19164 6.20885 6.35456 6.48696 6.81296 6.92181 7.33247 8.82007 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002625 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.053388 B =10665.761232 C =12017.869947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.537 5.537 3 C 0.014 3.986 4 C 0.120 3.880 5 H 0.078 0.922 6 C 0.036 3.964 7 N -0.692 5.692 8 C 0.118 3.882 9 C -0.160 4.160 10 C -0.069 4.069 11 C -0.214 4.214 12 C 0.213 3.787 13 N -0.632 5.632 14 C 0.098 3.902 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.273 1.273 24 C -0.217 4.217 25 C -0.047 4.047 26 C -0.151 4.151 27 C -0.171 4.171 28 C -0.170 4.170 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.340 0.660 38 H 0.087 0.913 39 H 0.034 0.966 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.267 0.733 48 H 0.132 0.868 49 H 0.140 0.860 50 H 0.113 0.887 51 H 0.101 0.899 52 H 0.092 0.908 53 H 0.098 0.902 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.019 -17.217 -1.412 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.260 5.260 3 C -0.134 4.134 4 C 0.011 3.989 5 H 0.097 0.903 6 C -0.094 4.094 7 N -0.328 5.328 8 C -0.010 4.010 9 C -0.163 4.163 10 C -0.089 4.089 11 C -0.237 4.237 12 C 0.108 3.892 13 N -0.339 5.339 14 C -0.045 4.045 15 C 0.145 3.855 16 C -0.580 4.580 17 H 0.067 0.933 18 C -0.187 4.187 19 N -0.566 5.566 20 Si 0.785 3.215 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.198 1.198 24 C -0.239 4.239 25 C -0.066 4.066 26 C -0.170 4.170 27 C -0.208 4.208 28 C -0.207 4.207 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.163 0.837 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.076 0.924 48 H 0.150 0.850 49 H 0.158 0.842 50 H 0.131 0.869 51 H 0.120 0.880 52 H 0.111 0.889 53 H 0.116 0.884 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.658 -17.729 -1.556 25.071 hybrid contribution -0.663 1.952 -0.379 2.096 sum 16.995 -15.777 -1.935 23.270 Atomic orbital electron populations 1.22680 0.87331 1.02318 1.01579 1.62157 1.07823 1.13677 1.42331 1.22616 1.01587 0.89001 1.00217 1.21192 0.94792 0.95609 0.87348 0.90340 1.22580 0.89592 0.98088 0.99176 1.61015 1.27123 1.40139 1.04571 1.20643 0.91794 0.96051 0.92470 1.19503 0.97232 0.94457 1.05072 1.20796 0.94758 0.95506 0.97797 1.20733 0.94903 1.00923 1.07165 1.18232 0.85107 0.92944 0.92924 1.46970 1.09820 1.16919 1.60223 1.21604 0.91290 0.95960 0.95662 1.18766 0.94522 0.79088 0.93115 1.21732 1.42513 0.92893 1.00825 0.93321 1.25780 0.95870 0.94797 1.02217 1.70033 1.48681 0.98455 1.39442 0.85572 0.78979 0.77407 0.79528 1.19379 1.20380 1.19790 1.20811 0.99195 0.94582 1.09357 1.20860 0.91371 0.98894 0.95523 1.22256 0.96674 1.04801 0.93239 1.23014 1.00235 0.98340 0.99188 1.22861 1.02939 0.92572 1.02352 0.92199 0.92979 0.91634 0.95992 0.90089 0.91597 0.89773 0.94446 0.83681 0.89471 0.94799 0.86311 0.88732 0.92903 0.92532 0.90344 0.97300 0.97157 0.92380 0.84994 0.84223 0.86920 0.88040 0.88943 0.88384 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.12 127.69 1.17 1.36 16 2 N -0.54 -9.84 3.71 -923.27 -3.42 -13.26 16 3 C 0.01 0.25 7.43 127.69 0.95 1.20 16 4 C 0.12 2.01 2.49 44.91 0.11 2.12 16 5 H 0.08 1.49 7.85 -2.39 -0.02 1.47 16 6 C 0.04 0.60 4.47 86.30 0.39 0.98 16 7 N -0.69 -14.38 5.08 -517.94 -2.63 -17.01 16 8 C 0.12 2.57 5.79 85.56 0.49 3.06 16 9 C -0.16 -4.53 5.39 -19.84 -0.11 -4.64 16 10 C -0.07 -2.33 9.69 22.25 0.22 -2.11 16 11 C -0.21 -8.95 9.21 22.40 0.21 -8.74 16 12 C 0.21 8.70 6.55 38.21 0.25 8.95 16 13 N -0.63 -27.78 2.99 -726.55 -2.17 -29.95 16 14 C 0.10 3.41 10.19 127.77 1.30 4.72 16 15 C 0.27 14.09 4.91 85.63 0.42 14.51 16 16 C -0.54 -30.49 9.39 25.60 0.24 -30.25 16 17 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 18 C 0.01 0.71 5.46 84.66 0.46 1.17 16 19 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 20 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.22 -7.16 9.21 22.40 0.21 -6.95 16 25 C -0.05 -1.35 9.69 22.25 0.22 -1.13 16 26 C -0.15 -2.15 5.62 -10.79 -0.06 -2.21 16 27 C -0.17 -2.45 8.68 30.62 0.27 -2.18 16 28 C -0.17 -2.42 10.24 30.62 0.31 -2.11 16 29 H 0.06 1.24 8.05 -2.38 -0.02 1.22 16 30 H 0.05 1.22 4.69 -2.39 -0.01 1.21 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.02 0.41 4.70 -2.39 -0.01 0.40 16 33 H 0.08 1.27 6.31 -2.39 -0.02 1.25 16 34 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 36 H 0.04 0.63 6.72 -2.39 -0.02 0.61 16 37 H 0.34 7.79 4.14 -89.69 -0.37 7.42 16 38 H 0.09 1.66 8.08 -2.39 -0.02 1.64 16 39 H 0.03 0.71 8.08 -2.39 -0.02 0.69 16 40 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 41 H 0.09 4.57 6.14 -2.91 -0.02 4.55 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 44 H 0.08 2.33 6.20 -2.39 -0.01 2.31 16 45 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 46 H 0.01 0.60 6.20 -2.39 -0.01 0.58 16 47 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 49 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 50 H 0.11 1.37 8.07 -2.39 -0.02 1.35 16 51 H 0.10 1.70 5.82 -2.38 -0.01 1.69 16 52 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 54 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -61.61 411.89 1.63 -59.98 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.51 Total: 30.55 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: 7.04 Total: -22.26 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -7.94 Total: -114.45 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.61 1.63 -59.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069782157.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.106 kcal (2) G-P(sol) polarization free energy of solvation -61.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds