Wall clock time and date at job start Tue Mar 31 2020 16:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46942 * 2 1 4 4 C 1.48534 * 111.00132 * 287.39733 * 3 2 1 5 5 C 1.54938 * 103.22743 * 200.28189 * 4 3 2 6 6 C 1.54593 * 102.92190 * 37.40998 * 5 4 3 7 7 H 1.08997 * 110.39179 * 97.00371 * 6 5 4 8 8 C 1.53002 * 110.30783 * 219.12892 * 6 5 4 9 9 N 1.46904 * 109.47126 * 290.71661 * 8 6 5 10 10 C 1.46896 * 111.00076 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47140 * 180.02562 * 10 9 8 12 12 C 1.38278 * 119.92802 * 89.99428 * 11 10 9 13 13 C 1.38108 * 120.07473 * 180.02562 * 12 11 10 14 14 C 1.38910 * 119.92560 * 0.02562 * 13 12 11 15 15 N 1.39671 * 120.07868 * 179.97438 * 14 13 12 16 16 C 1.46512 * 119.99592 * 359.97438 * 15 14 13 17 17 C 1.46491 * 120.00446 * 179.97438 * 15 14 13 18 18 C 1.50702 * 109.46957 * 89.99835 * 17 15 14 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 15 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 15 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 C 1.38915 * 119.84762 * 0.24630 * 14 13 12 27 27 C 1.38105 * 119.92552 * 359.49353 * 26 14 13 28 28 C 1.47898 * 111.00098 * 169.99769 * 3 2 1 29 29 H 1.08997 * 109.47231 * 60.00514 * 1 2 3 30 30 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47541 * 299.99765 * 1 2 3 32 32 H 1.09001 * 109.47029 * 240.00202 * 2 1 3 33 33 H 1.09005 * 109.47113 * 119.99765 * 2 1 3 34 34 H 1.09004 * 110.66357 * 318.71192 * 4 3 2 35 35 H 1.08994 * 110.67032 * 81.67290 * 4 3 2 36 36 H 1.09005 * 110.71636 * 279.05073 * 5 4 3 37 37 H 1.09001 * 110.72260 * 155.77104 * 5 4 3 38 38 H 1.08997 * 109.47082 * 170.71990 * 8 6 5 39 39 H 1.09000 * 109.47021 * 50.71506 * 8 6 5 40 40 H 1.00903 * 110.99785 * 56.04421 * 9 8 6 41 41 H 1.08997 * 109.47713 * 59.99776 * 10 9 8 42 42 H 1.09001 * 109.47022 * 299.99721 * 10 9 8 43 43 H 1.08004 * 119.96797 * 0.05246 * 12 11 10 44 44 H 1.07996 * 120.03782 * 179.97438 * 13 12 11 45 45 H 1.08995 * 109.46885 * 270.00007 * 16 15 14 46 46 H 1.09002 * 109.46695 * 30.00156 * 16 15 14 47 47 H 1.09003 * 109.46868 * 149.99784 * 16 15 14 48 48 H 1.09004 * 109.47166 * 330.00101 * 17 15 14 49 49 H 1.08994 * 109.47507 * 209.99808 * 17 15 14 50 50 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 51 51 H 1.07996 * 120.03582 * 179.73010 * 26 14 13 52 52 H 1.07995 * 119.96200 * 180.25763 * 27 26 14 53 53 H 1.09001 * 109.91703 * 26.49469 * 28 3 2 54 54 H 1.08996 * 109.91993 * 265.19834 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8061 2.0251 -1.3232 5 6 2.8087 3.2063 -1.3116 6 6 4.0329 2.6134 -0.5768 7 1 4.7737 2.2624 -1.2951 8 6 4.6508 3.6586 0.3542 9 7 5.2789 4.7177 -0.4469 10 6 5.8847 5.7410 0.4156 11 6 6.5171 6.8086 -0.4397 12 6 5.7754 7.9079 -0.8315 13 6 6.3518 8.8878 -1.6158 14 6 7.6780 8.7679 -2.0113 15 7 8.2639 9.7567 -2.8048 16 6 7.4794 10.9218 -3.2214 17 6 9.6628 9.6289 -3.2206 18 6 9.7314 8.8902 -4.5324 19 1 8.8238 8.5504 -5.0089 20 6 10.9526 8.6537 -5.1273 21 7 11.0122 8.0139 -6.2747 22 14 12.5225 9.2420 -4.3033 23 1 13.0358 8.1802 -3.4010 24 1 13.5415 9.5461 -5.3399 25 1 12.2381 10.4675 -3.5142 26 6 8.4185 7.6594 -1.6205 27 6 7.8375 6.6859 -0.8318 28 6 3.4783 1.4315 0.2398 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0404 1.3296 -2.1292 35 1 0.7821 2.3871 -1.4148 36 1 2.4005 4.0531 -0.7598 37 1 3.0729 3.4980 -2.3280 38 1 5.4036 3.1845 0.9839 39 1 3.8721 4.0915 0.9822 40 1 4.6153 5.1295 -1.0858 41 1 6.6461 5.2811 1.0454 42 1 5.1148 6.1884 1.0443 43 1 4.7443 8.0006 -0.5237 44 1 5.7718 9.7459 -1.9218 45 1 6.9876 10.7082 -4.1704 46 1 6.7273 11.1430 -2.4641 47 1 8.1397 11.7810 -3.3396 48 1 10.2180 9.0760 -2.4628 49 1 10.0988 10.6208 -3.3389 50 1 11.8713 7.8472 -6.6930 51 1 9.4485 7.5610 -1.9299 52 1 8.4139 5.8260 -0.5243 53 1 3.9392 0.5015 -0.0931 54 1 3.6755 1.5879 1.3003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097465628.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:38 Heat of formation + Delta-G solvation = 16.698162 kcal Electronic energy + Delta-G solvation = -27639.507766 eV Core-core repulsion = 23995.900360 eV Total energy + Delta-G solvation = -3643.607407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.53015 -40.17911 -37.92509 -36.55989 -34.77882 -34.14049 -31.98938 -31.66482 -30.25990 -30.12251 -29.61775 -27.25421 -25.76300 -24.39067 -23.88600 -23.27342 -22.92784 -21.66677 -21.13826 -20.80522 -19.08814 -18.20085 -17.29499 -16.97065 -16.86290 -16.34540 -16.00790 -15.82147 -15.66385 -15.35986 -15.13309 -15.04648 -14.82364 -14.41959 -14.32229 -14.30058 -14.00574 -13.86873 -13.53267 -13.34320 -13.31150 -13.12606 -13.10634 -12.73638 -12.60673 -12.43677 -12.40255 -12.24533 -12.20990 -12.04182 -11.82426 -11.77472 -11.68639 -11.55477 -11.47208 -11.42077 -10.82438 -10.41809 -9.66987 -9.39690 -9.24987 -8.33478 -7.91570 -6.38754 0.70725 0.82617 1.33926 1.34999 1.45461 2.30306 2.54159 2.98984 3.00546 3.05957 3.44720 3.71397 3.75262 4.02010 4.09541 4.12322 4.19131 4.22431 4.33665 4.35190 4.40526 4.46135 4.53894 4.54646 4.62122 4.63344 4.67728 4.68883 4.77654 4.80019 4.81468 4.84578 4.90707 4.92021 4.93970 4.98621 5.05170 5.05620 5.07997 5.08755 5.19671 5.30303 5.30907 5.37363 5.45821 5.60431 5.64353 5.92896 5.94310 6.09185 6.10843 6.16785 6.25415 6.53311 6.59842 6.69850 6.87210 7.26559 8.84071 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.001943 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.284036 B =14407.746559 C =14973.563115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 N -0.528 5.528 4 C 0.036 3.964 5 C -0.118 4.118 6 C -0.093 4.093 7 H 0.072 0.928 8 C 0.077 3.923 9 N -0.697 5.697 10 C 0.121 3.879 11 C -0.157 4.157 12 C -0.063 4.063 13 C -0.215 4.215 14 C 0.210 3.790 15 N -0.628 5.628 16 C 0.099 3.901 17 C 0.231 3.769 18 C -0.536 4.536 19 H 0.023 0.977 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.947 3.053 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.242 1.242 26 C -0.218 4.218 27 C -0.058 4.058 28 C 0.044 3.956 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.342 0.658 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.030 0.970 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.029 0.971 49 H 0.037 0.963 50 H 0.268 0.732 51 H 0.100 0.900 52 H 0.122 0.878 53 H 0.046 0.954 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 -9.802 17.174 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 N -0.253 5.253 4 C -0.092 4.092 5 C -0.156 4.156 6 C -0.113 4.113 7 H 0.091 0.909 8 C -0.052 4.052 9 N -0.329 5.329 10 C -0.008 4.008 11 C -0.160 4.160 12 C -0.082 4.082 13 C -0.238 4.238 14 C 0.106 3.894 15 N -0.336 5.336 16 C -0.044 4.044 17 C 0.109 3.891 18 C -0.575 4.575 19 H 0.041 0.959 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.770 3.230 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.165 1.165 26 C -0.240 4.240 27 C -0.077 4.077 28 C -0.085 4.085 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.160 0.840 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.049 0.951 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.047 0.953 49 H 0.055 0.945 50 H 0.077 0.923 51 H 0.118 0.882 52 H 0.140 0.860 53 H 0.064 0.936 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.315 -9.783 17.261 27.002 hybrid contribution 0.794 -0.048 -1.062 1.327 sum -17.521 -9.831 16.199 25.808 Atomic orbital electron populations 1.21702 0.94020 1.02125 1.02106 1.22313 0.97034 0.88712 1.00945 1.64814 1.14006 1.17303 1.29197 1.23245 1.00321 0.95745 0.89842 1.22548 0.94530 0.97826 1.00720 1.21961 0.96988 0.95062 0.97279 0.90942 1.21959 0.96862 0.91938 0.94469 1.60492 1.38294 1.13806 1.20320 1.20609 0.97713 0.89703 0.92728 1.19551 0.94041 0.97594 1.04800 1.20931 0.99466 0.92434 0.95335 1.20795 0.93257 1.03085 1.06669 1.18214 0.92855 0.88665 0.89640 1.46679 1.12041 1.21741 1.53160 1.21625 0.96204 0.87282 0.99303 1.19356 0.80084 0.96462 0.93228 1.21673 0.93077 1.36591 1.06186 0.95883 1.25896 1.02956 0.94659 0.95240 1.70071 1.26785 1.42812 1.18960 0.85719 0.78298 0.80279 0.78717 1.19083 1.20527 1.16542 1.20818 1.00619 0.96753 1.05860 1.20818 0.95254 0.96526 0.95079 1.22850 0.87599 0.97078 1.00941 0.93020 0.91209 0.92343 0.94790 0.90461 0.93939 0.89679 0.90854 0.90923 0.90954 0.94499 0.84005 0.90565 0.93489 0.84041 0.84915 0.95130 0.89430 0.91099 0.95326 0.94526 0.92337 0.88228 0.86018 0.93561 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 10.00 71.98 0.72 -0.87 16 2 C 0.04 0.50 5.42 86.30 0.47 0.97 16 3 N -0.53 -8.30 5.24 -883.03 -4.63 -12.93 16 4 C 0.04 0.55 5.91 86.65 0.51 1.06 16 5 C -0.12 -1.88 5.89 31.80 0.19 -1.69 16 6 C -0.09 -1.56 3.23 -9.92 -0.03 -1.59 16 7 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 8 C 0.08 1.32 4.83 86.30 0.42 1.73 16 9 N -0.70 -14.91 6.49 -517.93 -3.36 -18.27 16 10 C 0.12 2.62 5.81 85.56 0.50 3.11 16 11 C -0.16 -4.43 5.39 -19.84 -0.11 -4.54 16 12 C -0.06 -1.71 9.69 22.25 0.22 -1.49 16 13 C -0.22 -6.94 9.21 22.40 0.21 -6.73 16 14 C 0.21 8.39 6.55 38.22 0.25 8.64 16 15 N -0.63 -26.45 2.99 -726.55 -2.17 -28.63 16 16 C 0.10 3.31 10.23 127.76 1.31 4.61 16 17 C 0.23 11.06 4.02 85.64 0.34 11.41 16 18 C -0.54 -31.30 9.94 25.60 0.25 -31.04 16 19 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 20 C 0.01 0.61 5.47 84.66 0.46 1.07 16 21 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 22 Si 0.95 43.33 27.47 68.60 1.88 45.21 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 26 C -0.22 -8.91 9.20 22.40 0.21 -8.70 16 27 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 28 C 0.04 0.67 6.32 86.45 0.55 1.21 16 29 H 0.05 0.60 7.36 -2.39 -0.02 0.58 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.03 0.45 7.83 -2.39 -0.02 0.43 16 33 H 0.08 0.93 8.08 -2.38 -0.02 0.91 16 34 H 0.04 0.66 7.81 -2.38 -0.02 0.64 16 35 H 0.08 1.20 7.80 -2.39 -0.02 1.18 16 36 H 0.07 1.16 7.76 -2.38 -0.02 1.14 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.04 0.61 7.99 -2.39 -0.02 0.59 16 40 H 0.34 7.27 8.04 -89.69 -0.72 6.55 16 41 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 42 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 43 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.13 3.69 6.14 -2.91 -0.02 3.67 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.09 2.32 6.20 -2.39 -0.01 2.30 16 47 H 0.07 2.19 7.89 -2.39 -0.02 2.17 16 48 H 0.03 1.36 5.64 -2.38 -0.01 1.35 16 49 H 0.04 1.67 6.94 -2.39 -0.02 1.66 16 50 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 51 H 0.10 4.53 6.15 -2.91 -0.02 4.51 16 52 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 53 H 0.05 0.69 7.77 -2.39 -0.02 0.67 16 54 H 0.08 1.21 7.68 -2.39 -0.02 1.19 16 Total: -1.00 -68.45 418.33 -1.23 -69.68 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.08 Total: 28.81 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 6.67 Total: -24.57 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -9.87 Total: -119.13 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.21 kcal Total: -68.45 -1.23 -69.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097465628.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.377 kcal (2) G-P(sol) polarization free energy of solvation -68.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds