Wall clock time and date at job start Tue Mar 31 2020 16:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 120.00138 * 2 1 4 4 C 1.50706 * 109.46949 * 270.00242 * 3 2 1 5 5 H 1.07999 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 3 8 8 Si 1.86789 * 120.00458 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.47200 * 90.00092 * 8 6 4 10 10 H 1.48505 * 109.47499 * 210.00153 * 8 6 4 11 11 H 1.48500 * 109.47262 * 330.00415 * 8 6 4 12 12 C 1.39677 * 119.99671 * 180.02562 * 2 1 3 13 13 C 1.38915 * 120.07310 * 179.71809 * 12 2 1 14 14 C 1.38101 * 119.92539 * 179.76336 * 13 12 2 15 15 C 1.38288 * 120.07288 * 0.51702 * 14 13 12 16 16 C 1.50703 * 119.92489 * 179.72107 * 15 14 13 17 17 N 1.46897 * 109.46910 * 270.01972 * 16 15 14 18 18 C 1.46901 * 111.00182 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47323 * 179.97438 * 18 17 16 20 20 C 1.53117 * 109.52300 * 294.68283 * 19 18 17 21 21 C 1.53035 * 109.27974 * 182.44226 * 20 19 18 22 22 N 1.46844 * 109.52273 * 59.17887 * 21 20 19 23 23 C 1.46903 * 110.99650 * 174.16521 * 22 21 20 24 24 C 1.46845 * 111.20102 * 298.25599 * 22 21 20 25 25 C 1.53046 * 109.51844 * 61.74416 * 24 22 21 26 26 C 1.38286 * 120.15033 * 359.73842 * 15 14 13 27 27 C 1.38101 * 120.07469 * 0.02562 * 26 15 14 28 28 H 1.08991 * 109.46955 * 89.99639 * 1 2 3 29 29 H 1.08995 * 109.47080 * 209.99999 * 1 2 3 30 30 H 1.09001 * 109.46349 * 329.99612 * 1 2 3 31 31 H 1.09000 * 109.46609 * 150.00422 * 3 2 1 32 32 H 1.09000 * 109.47175 * 30.00216 * 3 2 1 33 33 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 34 34 H 1.08002 * 120.03297 * 0.02562 * 13 12 2 35 35 H 1.08001 * 119.96366 * 180.25592 * 14 13 12 36 36 H 1.08997 * 109.46929 * 30.01514 * 16 15 14 37 37 H 1.08998 * 109.46987 * 150.02275 * 16 15 14 38 38 H 1.00899 * 111.00518 * 56.04134 * 17 16 15 39 39 H 1.08998 * 109.46982 * 300.00028 * 18 17 16 40 40 H 1.09004 * 109.46814 * 60.00071 * 18 17 16 41 41 H 1.08994 * 109.52231 * 54.87425 * 19 18 17 42 42 H 1.09007 * 109.50522 * 302.38230 * 20 19 18 43 43 H 1.09007 * 109.50425 * 62.49782 * 20 19 18 44 44 H 1.09004 * 109.46307 * 299.15916 * 21 20 19 45 45 H 1.08999 * 109.46468 * 179.20050 * 21 20 19 46 46 H 1.09007 * 109.46823 * 184.21124 * 23 22 21 47 47 H 1.09005 * 109.47085 * 304.20267 * 23 22 21 48 48 H 1.08999 * 109.47513 * 64.21138 * 23 22 21 49 49 H 1.08999 * 109.46274 * 301.73463 * 24 22 21 50 50 H 1.08994 * 109.45595 * 181.75159 * 24 22 21 51 51 H 1.09001 * 109.50451 * 180.88155 * 25 24 22 52 52 H 1.08996 * 109.53454 * 60.77888 * 25 24 22 53 53 H 1.07999 * 119.96200 * 179.97438 * 26 15 14 54 54 H 1.08002 * 120.04127 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2418 6 6 3.1270 2.8775 -1.6727 7 7 3.3457 3.2573 -2.9127 8 14 3.7340 3.9286 -0.2530 9 1 5.1071 3.5067 0.1236 10 1 3.7500 5.3553 -0.6648 11 1 2.8275 3.7595 0.9110 12 6 2.1634 -1.2097 -0.0005 13 6 3.5525 -1.2115 -0.0065 14 6 4.2399 -2.4093 -0.0020 15 6 3.5469 -3.6060 -0.0025 16 6 4.3003 -4.9111 -0.0040 17 7 4.5446 -5.3338 -1.3895 18 6 5.2794 -6.6053 -1.4303 19 6 5.5139 -7.0123 -2.8864 20 6 4.1700 -7.3081 -3.5578 21 6 4.4147 -7.7732 -4.9951 22 7 5.2528 -8.9789 -4.9847 23 6 5.3943 -9.5333 -6.3377 24 6 6.5665 -8.7074 -4.3874 25 6 6.3859 -8.2701 -2.9319 26 6 2.1640 -3.6078 -0.0020 27 6 1.4704 -2.4136 -0.0015 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 3.1500 1.1382 0.5138 32 1 1.6086 2.0284 0.5139 33 1 3.8226 4.0833 -3.0899 34 1 4.0943 -0.2772 -0.0102 35 1 5.3199 -2.4115 -0.0024 36 1 5.2529 -4.7813 0.5095 37 1 3.7114 -5.6713 0.5092 38 1 5.0333 -4.6175 -1.9054 39 1 6.2388 -6.4868 -0.9267 40 1 4.6976 -7.3774 -0.9267 41 1 6.0157 -6.2019 -3.4149 42 1 3.6515 -8.0916 -3.0051 43 1 3.5608 -6.4041 -3.5666 44 1 4.9207 -6.9839 -5.5511 45 1 3.4605 -7.9982 -5.4715 46 1 5.9566 -10.4660 -6.2912 47 1 4.4065 -9.7252 -6.7568 48 1 5.9246 -8.8204 -6.9690 49 1 7.0625 -7.9136 -4.9461 50 1 7.1750 -9.6110 -4.4223 51 1 7.3601 -8.0536 -2.4934 52 1 5.9027 -9.0685 -2.3688 53 1 1.6258 -4.5441 -0.0028 54 1 0.3904 -2.4156 -0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105459419.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:37 Heat of formation + Delta-G solvation = 11.995416 kcal Electronic energy + Delta-G solvation = -27877.533583 eV Core-core repulsion = 24233.722250 eV Total energy + Delta-G solvation = -3643.811333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.50850 -40.06887 -37.95275 -36.68943 -34.82089 -34.19925 -31.98029 -31.75021 -31.33617 -30.08428 -28.59667 -27.02540 -25.66154 -24.60252 -23.99582 -23.41633 -22.84404 -22.29724 -21.03777 -20.55154 -19.09285 -18.18931 -17.13576 -16.79692 -16.33690 -16.27349 -16.01099 -15.91561 -15.64694 -15.43198 -15.40842 -15.13743 -14.87477 -14.60114 -14.38427 -14.30650 -14.05568 -13.76215 -13.50763 -13.34282 -13.27189 -13.18319 -13.11450 -12.79711 -12.70565 -12.58706 -12.43172 -12.34119 -12.07390 -12.04832 -11.98973 -11.76924 -11.50937 -11.44167 -11.19157 -11.14562 -10.83024 -10.41273 -9.66817 -9.29413 -9.22230 -8.34056 -7.91522 -6.39297 0.70614 0.83324 1.33425 1.34352 1.45098 2.29725 2.54032 2.99466 3.01648 3.03184 3.50819 3.83434 3.91019 4.01167 4.06873 4.15353 4.23922 4.27624 4.37571 4.40518 4.44478 4.50202 4.53355 4.61934 4.63586 4.64382 4.69159 4.72516 4.76333 4.82700 4.83678 4.84951 4.90523 4.93263 4.94416 5.00568 5.02683 5.04185 5.09449 5.14074 5.26392 5.30864 5.40525 5.45172 5.54806 5.60365 5.65492 5.92738 6.09245 6.12920 6.16060 6.18237 6.26032 6.49366 6.59474 6.69538 6.86935 7.26028 8.83520 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.002115 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.582627 B =13237.209304 C =13892.948222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.629 5.629 3 C 0.231 3.769 4 C -0.535 4.535 5 H 0.022 0.978 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.243 1.243 12 C 0.210 3.790 13 C -0.216 4.216 14 C -0.070 4.070 15 C -0.156 4.156 16 C 0.121 3.879 17 N -0.692 5.692 18 C 0.070 3.930 19 C -0.082 4.082 20 C -0.096 4.096 21 C 0.054 3.946 22 N -0.553 5.553 23 C 0.023 3.977 24 C 0.055 3.945 25 C -0.106 4.106 26 C -0.050 4.050 27 C -0.217 4.217 28 H 0.030 0.970 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.337 0.663 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.022 0.978 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.022 0.978 49 H 0.025 0.975 50 H 0.084 0.916 51 H 0.076 0.924 52 H 0.072 0.928 53 H 0.139 0.861 54 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -25.226 3.707 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.337 5.337 3 C 0.108 3.892 4 C -0.574 4.574 5 H 0.041 0.959 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.166 1.166 12 C 0.106 3.894 13 C -0.239 4.239 14 C -0.089 4.089 15 C -0.159 4.159 16 C -0.007 4.007 17 N -0.323 5.323 18 C -0.059 4.059 19 C -0.101 4.101 20 C -0.134 4.134 21 C -0.074 4.074 22 N -0.278 5.278 23 C -0.125 4.125 24 C -0.073 4.073 25 C -0.144 4.144 26 C -0.069 4.069 27 C -0.239 4.239 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.155 0.845 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.040 0.960 49 H 0.044 0.956 50 H 0.103 0.897 51 H 0.095 0.905 52 H 0.091 0.909 53 H 0.157 0.843 54 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.313 -25.557 3.836 26.055 hybrid contribution 1.565 2.182 -0.633 2.759 sum 4.879 -23.375 3.202 24.093 Atomic orbital electron populations 1.21617 0.79188 1.03092 1.00514 1.46683 1.05602 1.03318 1.78067 1.19364 0.92659 0.82412 0.94716 1.21658 1.36334 1.06687 0.92685 0.95934 1.25898 0.95544 0.98808 0.98543 1.70075 1.42756 1.24415 1.21431 0.85713 0.79852 0.77752 0.79663 1.19012 1.20573 1.16585 1.18219 0.91728 0.86458 0.93040 1.20782 0.93067 0.98728 1.11327 1.20857 0.99412 0.91351 0.97270 1.19556 0.93917 0.94132 1.08280 1.20616 0.97707 0.92973 0.89424 1.60530 1.52630 1.05716 1.13376 1.21968 0.96071 0.91747 0.96067 1.21151 0.96277 0.97305 0.95395 1.21435 0.96966 1.00830 0.94119 1.22136 0.97314 0.90281 0.97707 1.61992 1.14759 1.29717 1.21354 1.22401 1.02282 0.99624 0.88160 1.22123 0.89756 1.00140 0.95280 1.21572 0.99959 0.97023 0.95835 1.20883 0.93582 0.97041 0.95404 1.20821 1.00076 0.90836 1.12199 0.95182 0.89489 0.91071 0.95265 0.94545 0.92337 0.88148 0.85793 0.94441 0.89697 0.84546 0.94857 0.90627 0.92593 0.91707 0.91573 0.95952 0.90713 0.90388 0.91016 0.95985 0.95644 0.89737 0.90525 0.90917 0.84315 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.34 10.23 127.77 1.31 4.65 16 2 N -0.63 -26.54 2.99 -726.54 -2.17 -28.71 16 3 C 0.23 11.01 4.02 85.63 0.34 11.36 16 4 C -0.53 -31.05 9.94 25.60 0.25 -30.79 16 5 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 6 C 0.01 0.57 5.47 84.66 0.46 1.04 16 7 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 8 Si 0.95 43.07 27.47 68.60 1.88 44.95 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 12 C 0.21 8.37 6.55 38.21 0.25 8.62 16 13 C -0.22 -8.70 9.21 22.40 0.21 -8.49 16 14 C -0.07 -2.27 9.69 22.25 0.22 -2.06 16 15 C -0.16 -4.37 5.39 -19.84 -0.11 -4.48 16 16 C 0.12 2.58 5.81 85.56 0.50 3.08 16 17 N -0.69 -14.52 6.01 -517.94 -3.11 -17.63 16 18 C 0.07 1.17 5.08 86.30 0.44 1.61 16 19 C -0.08 -1.37 2.40 -10.71 -0.03 -1.39 16 20 C -0.10 -1.77 5.24 30.65 0.16 -1.61 16 21 C 0.05 0.97 5.46 86.33 0.47 1.44 16 22 N -0.55 -9.24 4.91 -922.57 -4.53 -13.77 16 23 C 0.02 0.31 9.59 127.69 1.22 1.54 16 24 C 0.05 0.81 5.46 86.33 0.47 1.28 16 25 C -0.11 -1.47 5.38 30.65 0.16 -1.30 16 26 C -0.05 -1.43 9.69 22.25 0.22 -1.21 16 27 C -0.22 -7.14 9.21 22.40 0.21 -6.93 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 2.35 6.20 -2.39 -0.01 2.34 16 30 H 0.07 2.21 7.89 -2.39 -0.02 2.19 16 31 H 0.03 1.38 5.64 -2.39 -0.01 1.37 16 32 H 0.04 1.66 6.95 -2.39 -0.02 1.65 16 33 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 34 H 0.10 4.48 6.15 -2.91 -0.02 4.46 16 35 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.04 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 38 H 0.34 7.71 8.72 -89.69 -0.78 6.93 16 39 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.07 1.43 7.84 -2.38 -0.02 1.41 16 44 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 46 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.07 0.90 8.09 -2.38 -0.02 0.88 16 48 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 51 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 54 H 0.13 3.77 6.14 -2.91 -0.02 3.76 16 Total: -1.00 -67.76 417.96 -0.86 -68.63 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.01 Total: 29.28 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 6.76 Total: -23.66 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -9.52 Total: -119.20 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -67.76 -0.86 -68.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105459419.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.622 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds