Wall clock time and date at job start Tue Mar 31 2020 16:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99539 * 2 1 4 4 H 1.48500 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47308 * 300.00316 * 3 2 1 6 6 H 1.48504 * 109.47085 * 60.00016 * 3 2 1 7 7 C 1.38947 * 120.00571 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99660 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99853 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99993 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99873 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.46884 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00056 * 179.97438 * 13 12 10 15 15 O 1.21719 * 119.99782 * 359.97438 * 14 13 12 16 16 C 1.46492 * 120.00137 * 180.02562 * 14 13 12 17 17 C 1.36687 * 125.44922 * 180.02562 * 16 14 13 18 18 C 1.37425 * 113.30692 * 179.97438 * 17 16 14 19 19 C 1.33968 * 115.08315 * 0.02562 * 18 17 16 20 20 Br 1.89097 * 124.52665 * 179.97438 * 19 18 17 21 21 S 1.70613 * 110.94115 * 359.97438 * 19 18 17 22 22 H 0.97002 * 120.00739 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00098 * 0.02562 * 9 7 2 24 24 H 1.09002 * 109.46859 * 60.00121 * 12 10 9 25 25 H 1.08995 * 109.46975 * 299.99661 * 12 10 9 26 26 H 0.97004 * 120.00275 * 0.02562 * 13 12 10 27 27 H 1.07993 * 123.34442 * 0.27002 * 17 16 14 28 28 H 1.07997 * 122.45260 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8892 2.3966 1.2125 7 6 2.0090 -1.2032 -0.0005 8 1 3.0889 -1.2031 -0.0001 9 7 1.3235 -2.3906 -0.0016 10 6 1.9975 -3.5577 -0.0016 11 8 3.2104 -3.5576 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1961 -5.9763 -0.0027 14 6 1.7470 -7.2470 -0.0027 15 8 0.5503 -7.4695 -0.0019 16 6 2.6990 -8.3604 -0.0027 17 6 2.3680 -9.6866 -0.0032 18 6 3.4608 -10.5198 -0.0035 19 6 4.6481 -9.8993 -0.0028 20 35 6.3195 -10.7836 -0.0023 21 16 4.4505 -8.2047 -0.0022 22 1 -0.4851 0.8400 -0.0004 23 1 0.3535 -2.3906 -0.0024 24 1 0.6178 -4.9204 -0.8925 25 1 0.6171 -4.9209 0.8875 26 1 3.1498 -5.7990 -0.0022 27 1 1.3489 -10.0440 -0.0080 28 1 3.3690 -11.5959 -0.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125515327.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:29 Heat of formation + Delta-G solvation = -40.618610 kcal Electronic energy + Delta-G solvation = -16997.556206 eV Core-core repulsion = 13800.471558 eV Total energy + Delta-G solvation = -3197.084648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.83080 -38.38850 -37.64238 -34.57385 -33.78990 -32.30973 -31.43915 -29.57296 -27.54102 -25.07802 -24.21549 -21.50280 -19.98150 -19.31606 -18.61045 -18.05074 -16.47987 -16.05724 -15.49281 -15.32524 -15.17824 -14.43090 -14.24284 -13.99024 -13.51280 -13.46621 -13.26098 -12.67772 -12.30330 -12.06463 -11.67457 -11.36682 -11.20725 -11.16400 -10.73234 -10.43813 -10.36752 -10.11395 -9.69367 -9.14666 -8.93856 -8.87351 -8.70611 -8.15072 -6.55705 -3.97924 0.05346 0.66437 1.33991 1.50392 2.00882 3.07119 3.10911 3.12526 3.21037 3.28039 3.67788 4.07495 4.74718 4.78191 4.83604 5.00733 5.12665 5.47898 5.67615 5.83776 5.85895 5.90212 5.98466 6.45066 7.42446 7.54716 7.86778 8.16178 8.39708 9.00075 9.33707 9.81052 10.61036 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.002416 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.852464 B =11587.766038 C =12582.474853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.701 5.701 14 C 0.586 3.414 15 O -0.531 6.531 16 C -0.243 4.243 17 C -0.062 4.062 18 C -0.107 4.107 19 C -0.235 4.235 20 Br 0.012 6.988 21 S 0.277 5.723 22 H 0.274 0.726 23 H 0.396 0.604 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.409 0.591 27 H 0.162 0.838 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.688 -21.837 -0.014 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.125 0.875 9 N -0.181 5.181 10 C 0.211 3.789 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.354 5.354 14 C 0.370 3.630 15 O -0.410 6.410 16 C -0.366 4.366 17 C -0.095 4.095 18 C -0.141 4.141 19 C -0.434 4.434 20 Br 0.096 6.904 21 S 0.545 5.455 22 H 0.084 0.916 23 H 0.230 0.770 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.247 0.753 27 H 0.180 0.820 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.154 -20.848 -0.013 23.189 hybrid contribution -1.106 -0.199 -0.001 1.124 sum 9.048 -21.047 -0.013 22.910 Atomic orbital electron populations 1.69618 1.06031 1.28515 1.49156 1.25337 0.95672 0.99981 0.96676 0.85750 0.79697 0.80741 0.77857 1.19096 1.20579 1.20584 1.19792 0.93533 0.81917 1.48249 0.87536 1.41791 1.09516 1.04444 1.62348 1.19675 0.88293 0.84934 0.85959 1.90502 1.13645 1.86739 1.57487 1.21037 0.91649 0.85444 1.03728 1.45600 1.11653 1.04505 1.73682 1.16816 0.87252 0.81633 0.77270 1.90839 1.15054 1.84500 1.50605 1.24958 0.97567 0.98417 1.15650 1.20701 1.00877 0.90061 0.97884 1.20045 0.89553 1.02155 1.02392 1.25896 0.97368 1.02099 1.17999 1.96748 1.19236 1.76623 1.97829 1.83542 0.98715 0.97768 1.65513 0.91575 0.76980 0.89333 0.89326 0.75307 0.82024 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 13.05 55.50 0.72 -22.73 15 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 15 3 Si 0.93 20.22 29.55 -169.99 -5.02 15.19 15 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 7 C -0.31 -8.16 9.68 -14.93 -0.14 -8.30 15 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 15 9 N -0.55 -13.25 5.29 -10.96 -0.06 -13.31 15 10 C 0.43 9.55 7.85 -10.98 -0.09 9.46 15 11 O -0.60 -14.97 15.24 5.55 0.08 -14.88 15 12 C 0.11 1.95 6.15 -5.19 -0.03 1.92 15 13 N -0.70 -11.67 5.52 -62.86 -0.35 -12.02 15 14 C 0.59 9.31 7.78 -12.94 -0.10 9.21 15 15 O -0.53 -9.72 16.84 5.17 0.09 -9.63 15 16 C -0.24 -3.13 6.45 -36.82 -0.24 -3.37 15 17 C -0.06 -0.67 10.01 -40.44 -0.40 -1.07 15 18 C -0.11 -0.99 10.05 -41.38 -0.42 -1.41 15 19 C -0.23 -2.35 6.70 29.23 0.20 -2.16 15 20 Br 0.01 0.11 34.04 -68.01 -2.32 -2.21 15 21 S 0.28 3.07 22.14 -107.50 -2.38 0.69 15 22 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 23 H 0.40 9.21 7.90 -40.82 -0.32 8.89 15 24 H 0.09 1.50 8.14 -51.93 -0.42 1.07 15 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.41 6.73 6.55 -40.82 -0.27 6.47 15 27 H 0.16 1.59 8.06 -52.49 -0.42 1.16 15 28 H 0.15 1.06 8.06 -52.49 -0.42 0.64 15 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -29.90 295.48 -7.89 -37.79 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -1.79 Total: 11.80 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.32 Total: 4.86 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.32 Total: -48.06 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.17 Total: -24.51 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.38 Total: 0.69 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -2.32 Total: -2.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.90 -7.89 -37.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125515327.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.834 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds