Wall clock time and date at job start Tue Mar 31 2020 16:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86806 * 119.99539 * 2 1 4 4 H 1.48500 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47308 * 300.00316 * 3 2 1 6 6 H 1.48504 * 109.47085 * 60.00016 * 3 2 1 7 7 C 1.38947 * 120.00571 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99660 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99853 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99993 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99873 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.46884 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00056 * 179.97438 * 13 12 10 15 15 O 1.21719 * 119.99782 * 359.97438 * 14 13 12 16 16 C 1.46492 * 120.00137 * 180.02562 * 14 13 12 17 17 C 1.36687 * 125.44922 * 180.02562 * 16 14 13 18 18 C 1.37425 * 113.30692 * 179.97438 * 17 16 14 19 19 C 1.33968 * 115.08315 * 0.02562 * 18 17 16 20 20 Br 1.89097 * 124.52665 * 179.97438 * 19 18 17 21 21 S 1.70613 * 110.94115 * 359.97438 * 19 18 17 22 22 H 0.97002 * 120.00739 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00098 * 0.02562 * 9 7 2 24 24 H 1.09002 * 109.46859 * 60.00121 * 12 10 9 25 25 H 1.08995 * 109.46975 * 299.99661 * 12 10 9 26 26 H 0.97004 * 120.00275 * 0.02562 * 13 12 10 27 27 H 1.07993 * 123.34442 * 0.27002 * 17 16 14 28 28 H 1.07997 * 122.45260 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8892 2.3966 1.2125 7 6 2.0090 -1.2032 -0.0005 8 1 3.0889 -1.2031 -0.0001 9 7 1.3235 -2.3906 -0.0016 10 6 1.9975 -3.5577 -0.0016 11 8 3.2104 -3.5576 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1961 -5.9763 -0.0027 14 6 1.7470 -7.2470 -0.0027 15 8 0.5503 -7.4695 -0.0019 16 6 2.6990 -8.3604 -0.0027 17 6 2.3680 -9.6866 -0.0032 18 6 3.4608 -10.5198 -0.0035 19 6 4.6481 -9.8993 -0.0028 20 35 6.3195 -10.7836 -0.0023 21 16 4.4505 -8.2047 -0.0022 22 1 -0.4851 0.8400 -0.0004 23 1 0.3535 -2.3906 -0.0024 24 1 0.6178 -4.9204 -0.8925 25 1 0.6171 -4.9209 0.8875 26 1 3.1498 -5.7990 -0.0022 27 1 1.3489 -10.0440 -0.0080 28 1 3.3690 -11.5959 -0.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125515327.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:29 Heat of formation + Delta-G solvation = -61.369355 kcal Electronic energy + Delta-G solvation = -16998.456025 eV Core-core repulsion = 13800.471558 eV Total energy + Delta-G solvation = -3197.984467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.962 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15855 -40.02685 -38.65511 -36.29311 -35.41903 -33.40831 -33.11725 -30.67973 -28.89227 -26.63760 -25.42583 -22.64832 -21.50560 -20.61555 -20.00222 -19.64324 -17.68117 -17.45642 -16.88310 -16.78455 -16.57969 -16.06183 -15.66912 -15.52781 -14.84610 -14.56781 -14.06102 -14.02777 -13.63478 -13.57548 -13.47668 -12.92169 -12.45029 -12.23822 -12.11045 -12.00326 -11.58945 -11.53892 -11.32842 -10.59526 -10.41966 -10.10575 -9.82978 -9.78065 -8.51820 -6.01986 -0.84910 -0.16933 0.52637 0.63716 1.13130 1.34895 1.43576 1.57151 1.84077 1.87249 1.99626 2.29982 3.06579 3.15451 3.60782 4.02276 4.18107 4.23844 4.38392 4.38526 4.70185 4.88250 5.05830 5.11685 5.38367 5.90505 6.25440 6.46709 6.88410 7.02816 7.42221 7.92448 8.65108 Molecular weight = 331.96amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.002416 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.852464 B =11587.766038 C =12582.474853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.557 5.557 10 C 0.431 3.569 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.705 5.705 14 C 0.590 3.410 15 O -0.560 6.560 16 C -0.275 4.275 17 C -0.045 4.045 18 C -0.102 4.102 19 C -0.231 4.231 20 Br 0.028 6.972 21 S 0.272 5.728 22 H 0.280 0.720 23 H 0.400 0.600 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.409 0.591 27 H 0.172 0.828 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.135 -22.977 -0.016 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.192 5.192 10 C 0.218 3.782 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.359 5.359 14 C 0.377 3.623 15 O -0.441 6.441 16 C -0.397 4.397 17 C -0.079 4.079 18 C -0.136 4.136 19 C -0.431 4.431 20 Br 0.112 6.888 21 S 0.540 5.460 22 H 0.090 0.910 23 H 0.234 0.766 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.248 0.752 27 H 0.190 0.810 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 10.601 -22.002 -0.015 24.423 hybrid contribution -1.177 0.009 0.000 1.177 sum 9.424 -21.994 -0.014 23.927 Atomic orbital electron populations 1.69678 1.06985 1.29618 1.49180 1.26117 0.96523 1.02650 0.95719 0.84814 0.78145 0.76745 0.78295 1.19442 1.19649 1.19663 1.19780 0.93003 0.83486 1.50368 0.89516 1.41828 1.09636 1.04539 1.63179 1.20365 0.88123 0.85899 0.83845 1.90479 1.15156 1.87479 1.58125 1.20886 0.91415 0.83411 1.04995 1.45616 1.11387 1.04624 1.74232 1.17112 0.87398 0.81717 0.76056 1.90814 1.16351 1.84870 1.52037 1.24697 0.97955 0.98097 1.18963 1.20958 1.01926 0.89382 0.95676 1.20288 0.88540 1.03403 1.01343 1.26101 0.98436 1.01573 1.16941 1.96780 1.18302 1.76033 1.97716 1.83567 0.97608 0.98975 1.65832 0.91037 0.76591 0.88006 0.88004 0.75243 0.81016 0.80063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.88 13.05 21.66 0.28 -47.59 15 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 15 3 Si 1.00 41.24 29.55 68.60 2.03 43.26 15 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 15 7 C -0.34 -18.31 9.68 84.04 0.81 -17.50 15 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 15 9 N -0.56 -27.43 5.29 -306.99 -1.62 -29.05 15 10 C 0.43 19.53 7.85 87.66 0.69 20.22 15 11 O -0.62 -31.84 15.24 -3.06 -0.05 -31.89 15 12 C 0.12 4.28 6.15 85.63 0.53 4.81 15 13 N -0.71 -23.38 5.52 -470.99 -2.60 -25.98 15 14 C 0.59 18.50 7.78 86.39 0.67 19.18 15 15 O -0.56 -20.20 16.84 -4.41 -0.07 -20.28 15 16 C -0.28 -6.82 6.45 24.06 0.16 -6.66 15 17 C -0.04 -0.89 10.01 21.71 0.22 -0.67 15 18 C -0.10 -1.62 10.05 21.11 0.21 -1.41 15 19 C -0.23 -4.15 6.70 66.85 0.45 -3.70 15 20 Br 0.03 0.43 34.04 -20.37 -0.69 -0.26 15 21 S 0.27 5.78 22.14 -56.49 -1.25 4.53 15 22 H 0.28 13.68 8.31 -92.71 -0.77 12.91 15 23 H 0.40 18.84 7.90 -92.71 -0.73 18.11 15 24 H 0.10 3.39 8.14 -2.39 -0.02 3.37 15 25 H 0.10 3.39 8.14 -2.39 -0.02 3.37 15 26 H 0.41 13.57 6.55 -92.71 -0.61 12.97 15 27 H 0.17 3.00 8.06 -2.91 -0.02 2.98 15 28 H 0.18 1.83 8.06 -2.91 -0.02 1.80 15 Total: -1.00 -63.34 295.48 0.13 -63.22 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.10 Total: 29.78 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 4.20 Total: 14.27 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -3.94 Total: -102.63 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.12 Total: -52.16 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.25 Total: 4.53 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -0.69 Total: -0.26 kcal Total: -63.34 0.13 -63.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125515327.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.848 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds