Wall clock time and date at job start Tue Mar 31 2020 16:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99761 * 2 1 4 4 C 1.52997 * 109.47640 * 66.04581 * 3 2 1 5 5 C 1.52993 * 109.47614 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47511 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99753 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00206 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99929 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00037 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47447 * 89.99781 * 10 8 6 12 12 H 1.48498 * 109.47361 * 209.99730 * 10 8 6 13 13 H 1.48500 * 109.47204 * 329.99621 * 10 8 6 14 14 C 1.46898 * 111.00095 * 236.04314 * 2 1 3 15 15 C 1.52996 * 109.47287 * 293.95318 * 14 2 1 16 16 N 1.46898 * 109.47287 * 179.97438 * 15 14 2 17 17 C 1.46961 * 110.99861 * 169.99841 * 16 15 14 18 18 C 1.53049 * 109.36181 * 183.18775 * 17 16 15 19 19 N 1.46965 * 109.36659 * 301.60325 * 18 17 16 20 20 C 1.39677 * 110.99759 * 183.18867 * 19 18 17 21 21 C 1.38912 * 120.07048 * 179.97438 * 20 19 18 22 22 C 1.38099 * 119.92393 * 180.02562 * 21 20 19 23 23 C 1.38285 * 120.07607 * 0.02562 * 22 21 20 24 24 C 1.38288 * 120.14912 * 359.97438 * 23 22 21 25 25 C 1.38107 * 120.07582 * 0.02562 * 24 23 22 26 26 C 1.46955 * 110.87927 * 59.32047 * 19 18 17 27 27 C 1.46950 * 111.00121 * 293.80252 * 16 15 14 28 28 H 1.09002 * 109.47183 * 183.95348 * 1 2 3 29 29 H 1.08999 * 109.47337 * 303.95688 * 1 2 3 30 30 H 1.09001 * 109.46901 * 63.95576 * 1 2 3 31 31 H 1.09002 * 109.47051 * 186.04368 * 3 2 1 32 32 H 1.08998 * 109.47047 * 306.04077 * 3 2 1 33 33 H 1.09002 * 109.46724 * 299.99986 * 4 3 2 34 34 H 1.08998 * 109.47312 * 59.99658 * 4 3 2 35 35 H 1.09002 * 109.47074 * 299.99784 * 5 4 3 36 36 H 1.08998 * 109.47050 * 59.99510 * 5 4 3 37 37 H 0.96999 * 119.99928 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.46531 * 173.95437 * 14 2 1 39 39 H 1.09001 * 109.47004 * 53.95569 * 14 2 1 40 40 H 1.09001 * 109.47172 * 59.99999 * 15 14 2 41 41 H 1.09001 * 109.47303 * 300.00067 * 15 14 2 42 42 H 1.08998 * 109.48396 * 63.22463 * 17 16 15 43 43 H 1.08992 * 109.48955 * 303.15338 * 17 16 15 44 44 H 1.09002 * 109.49137 * 181.63280 * 18 17 16 45 45 H 1.09007 * 109.49063 * 61.56507 * 18 17 16 46 46 H 1.08001 * 120.03609 * 0.02562 * 21 20 19 47 47 H 1.07995 * 119.96581 * 179.97438 * 22 21 20 48 48 H 1.07998 * 119.92755 * 179.72532 * 23 22 21 49 49 H 1.07997 * 119.96260 * 179.97438 * 24 23 22 50 50 H 1.07996 * 120.03841 * 180.02562 * 25 24 23 51 51 H 1.09006 * 109.48950 * 60.64738 * 26 19 18 52 52 H 1.09000 * 109.48705 * 180.71100 * 26 19 18 53 53 H 1.08998 * 109.48829 * 296.77675 * 27 16 15 54 54 H 1.09002 * 109.48906 * 56.83876 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1802 3.4857 1.3184 6 6 1.8212 4.1617 2.6166 7 1 1.2575 3.6263 3.3663 8 6 2.2113 5.4639 2.8468 9 7 2.8973 6.1159 1.9336 10 14 1.7669 6.3015 4.4562 11 1 2.8436 6.0651 5.4512 12 1 1.6146 7.7611 4.2291 13 1 0.4890 5.7443 4.9678 14 6 1.9955 -0.7660 -1.1375 15 6 1.6315 -2.2426 -0.9702 16 7 2.1575 -3.0086 -2.1081 17 6 2.0374 -4.4539 -1.8705 18 6 2.6668 -5.2143 -3.0402 19 7 1.9939 -4.8310 -4.2892 20 6 2.4940 -5.5593 -5.3711 21 6 1.9881 -5.3461 -6.6471 22 6 2.4845 -6.0682 -7.7145 23 6 3.4836 -7.0030 -7.5141 24 6 3.9895 -7.2177 -6.2451 25 6 3.4977 -6.4990 -5.1732 26 6 2.1140 -3.3857 -4.5266 27 6 1.4846 -2.6253 -3.3570 28 1 -0.3634 -1.0252 0.0709 29 1 -0.3634 0.5740 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8310 33 1 0.5471 2.0845 1.4264 34 1 2.0657 1.5017 2.1491 35 1 3.2645 3.4583 1.2105 36 1 1.7463 4.0418 0.4875 37 1 3.1714 7.0322 2.0954 38 1 3.0798 -0.6611 -1.1755 39 1 1.5611 -0.3873 -2.0628 40 1 0.5472 -2.3476 -0.9322 41 1 2.0659 -2.6214 -0.0450 42 1 0.9843 -4.7223 -1.7869 43 1 2.5541 -4.7148 -0.9470 44 1 2.5532 -6.2865 -2.8801 45 1 3.7262 -4.9665 -3.1071 46 1 1.2075 -4.6165 -6.8042 47 1 2.0913 -5.9034 -8.7067 48 1 3.8669 -7.5696 -8.3498 49 1 4.7695 -7.9488 -6.0919 50 1 3.8935 -6.6669 -4.1825 51 1 3.1672 -3.1172 -4.6103 52 1 1.5974 -3.1247 -5.4502 53 1 0.4253 -2.8730 -3.2902 54 1 1.5983 -1.5531 -3.5170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157786912.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:19 Heat of formation + Delta-G solvation = 23.638391 kcal Electronic energy + Delta-G solvation = -27565.894550 eV Core-core repulsion = 23922.588094 eV Total energy + Delta-G solvation = -3643.306456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.38220 -39.65472 -38.64120 -36.54491 -35.54819 -33.44032 -32.63418 -31.48936 -31.40810 -29.55034 -28.64124 -27.36574 -25.99943 -25.22424 -23.92497 -22.90783 -22.53464 -21.66479 -21.45873 -20.78028 -18.71868 -18.46253 -17.24132 -16.82083 -16.67982 -16.45414 -16.44341 -16.08712 -15.96290 -15.73949 -15.45267 -15.05206 -15.01026 -14.70534 -14.53767 -14.38937 -14.23268 -13.97189 -13.60707 -13.43536 -13.16359 -13.09828 -12.78996 -12.71362 -12.55943 -12.48978 -12.45938 -12.31136 -12.22576 -12.13109 -11.94111 -11.80725 -11.58240 -11.39870 -11.34820 -11.06511 -10.68574 -10.54248 -9.85118 -9.43228 -9.23418 -8.80958 -8.19505 -6.30520 0.45709 0.49351 1.40464 1.42003 1.53104 2.41110 2.55797 2.64558 2.97046 3.13608 3.24888 3.74001 3.85515 3.92287 3.99713 4.07908 4.08605 4.16148 4.21620 4.27540 4.30784 4.32140 4.38313 4.43414 4.54351 4.57907 4.59159 4.60468 4.63244 4.72487 4.73702 4.76588 4.82522 4.83803 4.90860 4.95489 5.01320 5.03728 5.07561 5.10714 5.13228 5.27286 5.30684 5.51860 5.52947 5.66904 5.74906 5.81318 5.86551 5.91944 5.98101 6.03574 6.10052 6.20183 6.28254 6.34734 6.86226 7.38683 8.92392 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.034015 B = 0.001513 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.964385 B =18506.693621 C =18751.751130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.070 3.930 4 C -0.089 4.089 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.063 3.937 15 C 0.073 3.927 16 N -0.547 5.547 17 C 0.059 3.941 18 C 0.057 3.943 19 N -0.498 5.498 20 C 0.097 3.903 21 C -0.155 4.155 22 C -0.102 4.102 23 C -0.156 4.156 24 C -0.102 4.102 25 C -0.183 4.183 26 C 0.067 3.933 27 C 0.055 3.945 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.052 0.948 35 H -0.008 1.008 36 H -0.010 1.010 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.051 0.949 46 H 0.127 0.873 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.134 0.866 51 H 0.043 0.957 52 H 0.093 0.907 53 H 0.041 0.959 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 -29.834 -18.330 35.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.058 4.058 4 C -0.127 4.127 5 C -0.013 4.013 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.187 1.187 14 C -0.065 4.065 15 C -0.055 4.055 16 N -0.272 5.272 17 C -0.069 4.069 18 C -0.070 4.070 19 N -0.214 5.214 20 C 0.000 4.000 21 C -0.175 4.175 22 C -0.121 4.121 23 C -0.174 4.174 24 C -0.120 4.120 25 C -0.204 4.204 26 C -0.059 4.059 27 C -0.073 4.073 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.070 0.930 46 H 0.145 0.855 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.157 0.843 50 H 0.152 0.848 51 H 0.062 0.938 52 H 0.112 0.888 53 H 0.059 0.941 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.397 -29.849 -17.865 34.815 hybrid contribution -0.442 1.294 -0.009 1.368 sum -1.840 -28.554 -17.874 33.738 Atomic orbital electron populations 1.22484 0.87014 1.02554 1.00568 1.61907 1.08565 1.13498 1.43265 1.22005 0.99467 0.87471 0.96878 1.21398 0.99819 0.95220 0.96280 1.18982 0.94698 0.92225 0.95393 1.21693 1.34951 0.98358 1.03089 0.92266 1.25987 0.94947 0.98280 1.00640 1.70100 1.39330 1.11761 1.36183 0.85439 0.79036 0.77388 0.79138 1.19752 1.20683 1.18746 1.22043 1.00372 0.93204 0.90858 1.21915 0.97670 0.92337 0.93605 1.62059 1.57128 1.05323 1.02731 1.22195 0.99881 0.86353 0.98427 1.22355 0.96598 1.00451 0.87557 1.59303 1.54179 1.05643 1.02257 1.19149 0.93488 0.96342 0.91042 1.20987 1.02046 1.02946 0.91557 1.21312 0.96322 0.95251 0.99175 1.21402 0.98497 0.99752 0.97785 1.21320 0.99407 0.98743 0.92544 1.21524 0.97648 1.00470 1.00725 1.22255 1.00201 0.84656 0.98753 1.22225 0.96105 0.99955 0.88995 0.89901 0.91756 0.95784 0.91538 0.95795 0.93035 0.92947 0.98991 0.99170 0.92796 0.90900 0.94880 0.94283 0.89901 0.94143 0.88643 0.88528 0.93032 0.85480 0.84135 0.84305 0.84290 0.84832 0.93829 0.88835 0.94120 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.13 127.69 1.17 1.73 16 2 N -0.55 -15.91 4.76 -922.47 -4.39 -20.31 16 3 C 0.07 2.46 4.96 86.30 0.43 2.89 16 4 C -0.09 -3.79 5.08 30.59 0.16 -3.64 16 5 C 0.02 1.33 4.97 29.85 0.15 1.48 16 6 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 7 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 9 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 10 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.06 1.52 4.89 86.30 0.42 1.94 16 15 C 0.07 1.44 4.88 86.30 0.42 1.86 16 16 N -0.55 -10.00 4.71 -895.75 -4.22 -14.22 16 17 C 0.06 0.91 5.61 86.31 0.48 1.40 16 18 C 0.06 0.84 4.29 86.31 0.37 1.21 16 19 N -0.50 -8.33 4.75 -694.75 -3.30 -11.64 16 20 C 0.10 1.64 5.64 38.21 0.22 1.85 16 21 C -0.16 -2.40 9.19 22.40 0.21 -2.19 16 22 C -0.10 -1.32 10.04 22.25 0.22 -1.10 16 23 C -0.16 -1.90 10.04 22.29 0.22 -1.68 16 24 C -0.10 -1.31 10.04 22.25 0.22 -1.09 16 25 C -0.18 -2.76 8.82 22.40 0.20 -2.56 16 26 C 0.07 1.09 5.38 86.31 0.46 1.55 16 27 C 0.06 0.95 5.41 86.31 0.47 1.42 16 28 H 0.08 1.76 6.47 -2.39 -0.02 1.74 16 29 H 0.06 1.81 6.30 -2.39 -0.02 1.80 16 30 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 2.38 7.93 -2.39 -0.02 2.36 16 32 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.05 2.13 6.47 -2.39 -0.02 2.11 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.07 1.88 7.93 -2.39 -0.02 1.86 16 39 H 0.03 0.78 6.47 -2.39 -0.02 0.76 16 40 H 0.04 0.76 6.53 -2.39 -0.02 0.74 16 41 H 0.08 1.70 8.03 -2.39 -0.02 1.68 16 42 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 44 H 0.10 1.19 7.17 -2.39 -0.02 1.18 16 45 H 0.05 0.81 7.58 -2.38 -0.02 0.79 16 46 H 0.13 1.75 7.19 -2.91 -0.02 1.73 16 47 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 48 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 49 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 50 H 0.13 1.70 5.81 -2.91 -0.02 1.68 16 51 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 52 H 0.09 1.33 6.82 -2.39 -0.02 1.31 16 53 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.09 1.48 6.34 -2.39 -0.02 1.47 16 Total: -1.00 -66.41 411.76 -2.25 -68.66 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.84 Total: 13.81 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 6.51 Total: -25.87 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -11.63 Total: -103.43 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -66.41 -2.25 -68.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157786912.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.301 kcal (2) G-P(sol) polarization free energy of solvation -66.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds