Wall clock time and date at job start Tue Mar 31 2020 16:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99670 * 2 1 4 4 H 1.48506 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99110 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99525 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.39723 * 119.99827 * 179.97438 * 13 12 10 15 15 C 1.38933 * 120.05913 * 179.97438 * 14 13 12 16 16 C 1.38093 * 119.96154 * 179.97438 * 15 14 13 17 17 C 1.38347 * 120.07590 * 0.02562 * 16 15 14 18 18 Br 1.89110 * 119.94070 * 180.02562 * 17 16 15 19 19 C 1.38455 * 120.11953 * 0.02562 * 17 16 15 20 20 Cl 1.73602 * 119.98091 * 180.02562 * 19 17 16 21 21 C 1.38237 * 120.04010 * 359.70312 * 19 17 16 22 22 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 25 25 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 26 26 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 27 27 H 1.08009 * 120.01882 * 359.97438 * 15 14 13 28 28 H 1.08001 * 119.95879 * 179.97438 * 16 15 14 29 29 H 1.07998 * 120.04337 * 180.30105 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1958 -5.9764 -0.0088 14 6 1.7301 -7.2937 -0.0144 15 6 2.6319 -8.3506 -0.0189 16 6 2.1694 -9.6517 -0.0239 17 6 0.8091 -9.9041 -0.0249 18 35 0.1799 -11.6874 -0.0310 19 6 -0.0924 -8.8532 -0.0216 20 17 -1.7986 -9.1740 -0.0223 21 6 0.3652 -7.5489 -0.0109 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 0.0005 24 1 0.6165 -4.9246 0.8846 25 1 0.6179 -4.9168 -0.8953 26 1 3.1496 -5.7992 -0.0077 27 1 3.6940 -8.1546 -0.0185 28 1 2.8704 -10.4733 -0.0278 29 1 -0.3380 -6.7292 -0.0034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162050424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:19 Heat of formation + Delta-G solvation = -19.556751 kcal Electronic energy + Delta-G solvation = -17068.819224 eV Core-core repulsion = 13870.604181 eV Total energy + Delta-G solvation = -3198.215043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.967 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75290 -38.43257 -36.70878 -35.29354 -34.08640 -31.66786 -31.39963 -30.96042 -28.97131 -26.60347 -24.56385 -22.95517 -21.64997 -19.58605 -18.22450 -17.87136 -16.40170 -15.78926 -15.63654 -15.01794 -14.81887 -14.46274 -14.22484 -13.93340 -13.82478 -13.65049 -12.65343 -12.38403 -11.96226 -11.69706 -11.69082 -11.59062 -11.25581 -11.12215 -11.09931 -10.47316 -10.39237 -10.15528 -9.74941 -9.67951 -8.99814 -8.74862 -8.19583 -7.49271 -6.60059 -4.02315 1.01871 1.17503 1.53279 2.03612 3.04355 3.17517 3.23243 3.38623 3.48137 3.63210 4.04982 4.59218 4.71614 4.97623 5.07578 5.12850 5.25103 5.49365 5.54980 5.72319 5.79107 5.93410 6.02311 6.06160 6.40680 7.16369 7.38460 7.75309 7.86057 8.35206 8.96267 9.29014 9.76520 10.56706 Molecular weight = 331.97amu Principal moments of inertia in cm(-1) A = 0.037043 B = 0.002385 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.706700 B =11738.578117 C =12479.122226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.595 6.595 12 C 0.106 3.894 13 N -0.711 5.711 14 C 0.256 3.744 15 C -0.192 4.192 16 C -0.028 4.028 17 C -0.159 4.159 18 Br -0.051 7.051 19 C 0.043 3.957 20 Cl -0.055 7.055 21 C -0.195 4.195 22 H 0.274 0.726 23 H 0.395 0.605 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.416 0.584 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -21.202 -0.057 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.482 6.482 12 C -0.022 4.022 13 N -0.339 5.339 14 C 0.147 3.853 15 C -0.216 4.216 16 C -0.049 4.049 17 C -0.241 4.241 18 Br 0.034 6.966 19 C 0.013 3.987 20 Cl -0.026 7.026 21 C -0.220 4.220 22 H 0.084 0.916 23 H 0.229 0.771 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.256 0.744 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.076 -21.485 -0.059 21.585 hybrid contribution 0.021 1.375 0.002 1.375 sum -2.056 -20.110 -0.057 20.215 Atomic orbital electron populations 1.69611 1.06031 1.28557 1.49168 1.25331 0.95682 0.99998 0.96625 0.85748 0.79705 0.80702 0.77897 1.19098 1.20542 1.20547 1.19783 0.93521 0.81938 1.48304 0.87597 1.41802 1.09441 1.04506 1.62483 1.19635 0.88312 0.84849 0.85969 1.90513 1.13699 1.86680 1.57259 1.21073 0.92173 0.86545 1.02420 1.44669 1.10261 1.00899 1.78070 1.17792 0.91995 0.85173 0.90378 1.20681 0.99684 0.90919 1.10311 1.20714 0.92579 0.96856 0.94753 1.21280 0.94845 0.89880 1.18133 1.96645 1.88986 1.12910 1.98075 1.20398 0.84830 0.93176 1.00249 1.98383 1.11944 1.95740 1.96492 1.20480 0.94470 0.95182 1.11855 0.91554 0.77084 0.90164 0.90153 0.74406 0.84663 0.84458 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.11 13.05 55.50 0.72 -22.38 15 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 15 3 Si 0.93 20.03 29.55 -169.99 -5.02 15.01 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 15 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 15 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 15 9 N -0.55 -12.92 5.29 -10.96 -0.06 -12.98 15 10 C 0.43 9.23 7.85 -10.98 -0.09 9.14 15 11 O -0.60 -14.78 15.24 5.55 0.08 -14.70 15 12 C 0.11 1.69 5.39 -5.20 -0.03 1.66 15 13 N -0.71 -10.50 5.71 -59.81 -0.34 -10.84 15 14 C 0.26 3.35 6.65 -83.77 -0.56 2.79 15 15 C -0.19 -2.18 9.89 -39.38 -0.39 -2.57 15 16 C -0.03 -0.30 9.78 -39.59 -0.39 -0.69 15 17 C -0.16 -1.88 6.23 -39.46 -0.25 -2.13 15 18 Br -0.05 -0.55 32.52 -68.01 -2.21 -2.76 15 19 C 0.04 0.54 6.32 -39.50 -0.25 0.29 15 20 Cl -0.05 -0.65 27.73 -51.86 -1.44 -2.09 15 21 C -0.20 -2.49 9.09 -39.35 -0.36 -2.85 15 22 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15 23 H 0.40 8.85 7.90 -40.82 -0.32 8.53 15 24 H 0.08 1.15 7.94 -51.93 -0.41 0.74 15 25 H 0.08 1.15 7.96 -51.93 -0.41 0.74 15 26 H 0.42 6.50 7.45 -40.82 -0.30 6.20 15 27 H 0.14 1.31 8.06 -52.48 -0.42 0.89 15 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 15 29 H 0.14 1.70 6.73 -52.49 -0.35 1.35 15 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -28.06 296.35 -8.50 -36.56 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -2.16 Total: 11.71 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.54 Total: -1.99 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.33 Total: -46.20 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.44 Total: -2.09 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.21 Total: -2.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.06 -8.50 -36.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162050424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.000 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds