Wall clock time and date at job start Tue Mar 31 2020 16:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99670 * 2 1 4 4 H 1.48506 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46903 * 299.99110 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99525 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.39723 * 119.99827 * 179.97438 * 13 12 10 15 15 C 1.38933 * 120.05913 * 179.97438 * 14 13 12 16 16 C 1.38093 * 119.96154 * 179.97438 * 15 14 13 17 17 C 1.38347 * 120.07590 * 0.02562 * 16 15 14 18 18 Br 1.89110 * 119.94070 * 180.02562 * 17 16 15 19 19 C 1.38455 * 120.11953 * 0.02562 * 17 16 15 20 20 Cl 1.73602 * 119.98091 * 180.02562 * 19 17 16 21 21 C 1.38237 * 120.04010 * 359.70312 * 19 17 16 22 22 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 25 25 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 26 26 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 27 27 H 1.08009 * 120.01882 * 359.97438 * 15 14 13 28 28 H 1.08001 * 119.95879 * 179.97438 * 16 15 14 29 29 H 1.07998 * 120.04337 * 180.30105 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1958 -5.9764 -0.0088 14 6 1.7301 -7.2937 -0.0144 15 6 2.6319 -8.3506 -0.0189 16 6 2.1694 -9.6517 -0.0239 17 6 0.8091 -9.9041 -0.0249 18 35 0.1799 -11.6874 -0.0310 19 6 -0.0924 -8.8532 -0.0216 20 17 -1.7986 -9.1740 -0.0223 21 6 0.3652 -7.5489 -0.0109 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 0.0005 24 1 0.6165 -4.9246 0.8846 25 1 0.6179 -4.9168 -0.8953 26 1 3.1496 -5.7992 -0.0077 27 1 3.6940 -8.1546 -0.0185 28 1 2.8704 -10.4733 -0.0278 29 1 -0.3380 -6.7292 -0.0034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162050424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:18 Heat of formation + Delta-G solvation = -36.749012 kcal Electronic energy + Delta-G solvation = -17069.564736 eV Core-core repulsion = 13870.604181 eV Total energy + Delta-G solvation = -3198.960556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 331.967 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85108 -40.02129 -37.68168 -36.53199 -35.84369 -33.40162 -32.54256 -31.88304 -30.11430 -27.94713 -26.20956 -23.94617 -22.66783 -21.22495 -20.04717 -19.06036 -17.58823 -17.28598 -16.63780 -16.43957 -16.41736 -15.87551 -15.46284 -15.10344 -15.02416 -14.74221 -14.07003 -13.96455 -13.55306 -12.96984 -12.84554 -12.66200 -12.53393 -12.45427 -12.12857 -12.11158 -12.03384 -11.58765 -11.03090 -10.66415 -10.56153 -10.10250 -9.91238 -8.52516 -8.52143 -6.02228 0.08380 0.25121 0.62580 1.10457 1.34318 1.42652 1.55833 1.90899 2.14327 2.36001 2.55857 3.13487 3.15146 3.71361 4.07358 4.13400 4.21465 4.34078 4.39696 4.44010 4.65523 4.84166 5.09472 5.13058 5.37329 5.49032 5.87378 6.12393 6.48482 6.62490 7.03787 7.44074 7.95505 8.64324 Molecular weight = 331.97amu Principal moments of inertia in cm(-1) A = 0.037043 B = 0.002385 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.706700 B =11738.578117 C =12479.122226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.083 0.917 9 N -0.560 5.560 10 C 0.430 3.570 11 O -0.629 6.629 12 C 0.122 3.878 13 N -0.720 5.720 14 C 0.243 3.757 15 C -0.188 4.188 16 C -0.024 4.024 17 C -0.164 4.164 18 Br -0.041 7.041 19 C 0.031 3.969 20 Cl -0.053 7.053 21 C -0.200 4.200 22 H 0.280 0.720 23 H 0.400 0.600 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.411 0.589 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -22.132 -0.063 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.195 5.195 10 C 0.217 3.783 11 O -0.517 6.517 12 C -0.006 4.006 13 N -0.349 5.349 14 C 0.136 3.864 15 C -0.211 4.211 16 C -0.045 4.045 17 C -0.246 4.246 18 Br 0.044 6.956 19 C 0.002 3.998 20 Cl -0.024 7.024 21 C -0.225 4.225 22 H 0.089 0.911 23 H 0.234 0.766 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.250 0.750 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.200 -22.457 -0.064 22.565 hybrid contribution 0.052 1.496 0.004 1.497 sum -2.148 -20.961 -0.061 21.071 Atomic orbital electron populations 1.69664 1.06858 1.29546 1.49354 1.26061 0.96524 1.02514 0.95826 0.84853 0.78103 0.76970 0.78323 1.19644 1.19639 1.19649 1.19729 0.92868 0.83719 1.50366 0.89907 1.41843 1.09601 1.04573 1.63521 1.20582 0.88169 0.86167 0.83362 1.90488 1.15597 1.87601 1.57990 1.20926 0.91762 0.83691 1.04252 1.44559 1.09608 1.01190 1.79554 1.17916 0.92463 0.84669 0.91402 1.20923 1.00384 0.90712 1.09102 1.21006 0.92555 0.97320 0.93599 1.21532 0.95370 0.90323 1.17424 1.96659 1.89004 1.11969 1.98015 1.20502 0.85157 0.93359 1.00806 1.98381 1.11781 1.95707 1.96508 1.20558 0.94517 0.95540 1.11863 0.91075 0.76560 0.88221 0.88231 0.75011 0.83050 0.81942 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.08 13.05 21.66 0.28 -46.80 15 2 C -0.01 -0.43 5.50 84.92 0.47 0.04 15 3 Si 0.99 40.98 29.55 68.60 2.03 43.00 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 7 C -0.34 -18.14 9.68 84.04 0.81 -17.32 15 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 15 9 N -0.56 -26.73 5.29 -306.98 -1.62 -28.35 15 10 C 0.43 18.65 7.85 87.66 0.69 19.34 15 11 O -0.63 -31.71 15.24 -3.07 -0.05 -31.75 15 12 C 0.12 3.74 5.39 85.64 0.46 4.20 15 13 N -0.72 -20.49 5.71 -343.13 -1.96 -22.44 15 14 C 0.24 5.96 6.65 38.20 0.25 6.21 15 15 C -0.19 -3.85 9.89 22.40 0.22 -3.63 15 16 C -0.02 -0.46 9.78 22.26 0.22 -0.24 15 17 C -0.16 -3.54 6.23 22.35 0.14 -3.40 15 18 Br -0.04 -0.81 32.52 -20.37 -0.66 -1.47 15 19 C 0.03 0.73 6.32 22.32 0.14 0.87 15 20 Cl -0.05 -1.18 27.73 -2.72 -0.08 -1.26 15 21 C -0.20 -4.80 9.09 22.42 0.20 -4.59 15 22 H 0.28 13.47 8.31 -92.71 -0.77 12.70 15 23 H 0.40 18.03 7.90 -92.71 -0.73 17.30 15 24 H 0.10 2.70 7.94 -2.38 -0.02 2.68 15 25 H 0.10 2.70 7.96 -2.39 -0.02 2.68 15 26 H 0.41 12.62 7.45 -92.71 -0.69 11.93 15 27 H 0.15 2.58 8.06 -2.91 -0.02 2.55 15 28 H 0.16 2.19 8.06 -2.91 -0.02 2.17 15 29 H 0.15 3.26 6.73 -2.91 -0.02 3.24 15 Total: -1.00 -59.67 296.35 1.36 -58.32 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.20 Total: 29.28 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 3.61 Total: 1.47 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -3.30 Total: -97.60 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.05 Total: -31.75 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.66 Total: -1.47 kcal Total: -59.67 1.36 -58.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162050424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.571 kcal (2) G-P(sol) polarization free energy of solvation -59.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds