Wall clock time and date at job start Tue Mar 31 2020 16:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99316 * 2 1 4 4 C 1.46898 * 111.00233 * 123.95405 * 2 1 3 5 5 C 1.53003 * 109.46856 * 164.07446 * 4 2 1 6 6 H 1.08998 * 110.62721 * 53.63727 * 5 4 2 7 7 C 1.55136 * 110.85385 * 290.42761 * 5 4 2 8 8 C 1.54905 * 101.65100 * 205.89322 * 7 5 4 9 9 N 1.47845 * 104.79670 * 37.07228 * 8 7 5 10 10 C 1.46904 * 111.00063 * 213.63538 * 9 8 7 11 11 C 1.50693 * 109.46916 * 290.84124 * 10 9 8 12 12 C 1.38290 * 119.92651 * 269.72328 * 11 10 9 13 13 C 1.38105 * 120.07742 * 179.72623 * 12 11 10 14 14 C 1.38911 * 119.92029 * 0.55354 * 13 12 11 15 15 N 1.39674 * 120.07420 * 179.70524 * 14 13 12 16 16 C 1.46500 * 120.00297 * 180.02562 * 15 14 13 17 17 C 1.46506 * 119.99746 * 0.02562 * 15 14 13 18 18 C 1.50699 * 109.46955 * 90.00655 * 17 15 14 19 19 H 1.08001 * 119.99741 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00335 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99739 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00533 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46931 * 59.99333 * 22 20 18 24 24 H 1.48497 * 109.47107 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46686 * 299.99851 * 22 20 18 26 26 C 1.38908 * 119.85450 * 359.72088 * 14 13 12 27 27 C 1.38104 * 119.92367 * 0.02562 * 26 14 13 28 28 C 1.47447 * 108.56474 * 335.90169 * 9 8 7 29 29 H 1.08997 * 109.47169 * 296.11480 * 1 2 3 30 30 H 1.08998 * 109.47369 * 56.11743 * 1 2 3 31 31 H 1.09001 * 109.46637 * 176.11897 * 1 2 3 32 32 H 1.09005 * 109.46510 * 183.95465 * 3 2 1 33 33 H 1.08994 * 109.47495 * 303.95413 * 3 2 1 34 34 H 1.09002 * 109.47010 * 63.95612 * 3 2 1 35 35 H 1.08998 * 109.46821 * 44.07426 * 4 2 1 36 36 H 1.09004 * 109.47232 * 284.07437 * 4 2 1 37 37 H 1.09000 * 110.99277 * 323.98248 * 7 5 4 38 38 H 1.09004 * 110.99342 * 87.80632 * 7 5 4 39 39 H 1.09000 * 110.37771 * 278.24178 * 8 7 5 40 40 H 1.09000 * 110.37648 * 155.90086 * 8 7 5 41 41 H 1.08999 * 109.46869 * 50.84054 * 10 9 8 42 42 H 1.09001 * 109.46809 * 170.84268 * 10 9 8 43 43 H 1.08007 * 119.95931 * 359.97438 * 12 11 10 44 44 H 1.07994 * 120.04191 * 180.27262 * 13 12 11 45 45 H 1.09005 * 109.46909 * 89.99913 * 16 15 14 46 46 H 1.08994 * 109.47079 * 209.99510 * 16 15 14 47 47 H 1.08995 * 109.46782 * 329.99663 * 16 15 14 48 48 H 1.08999 * 109.47133 * 210.00312 * 17 15 14 49 49 H 1.08992 * 109.47390 * 330.00300 * 17 15 14 50 50 H 0.97002 * 120.00297 * 180.02562 * 21 20 18 51 51 H 1.08001 * 120.03970 * 179.97438 * 26 14 13 52 52 H 1.08004 * 119.96466 * 179.97438 * 27 26 14 53 53 H 1.08999 * 109.88697 * 120.39592 * 28 9 8 54 54 H 1.09002 * 109.88791 * 241.41987 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4733 -1.0825 0.8990 6 1 4.0312 -0.1713 0.6832 7 6 3.6391 -2.1122 -0.2495 8 6 4.9924 -2.7720 0.1149 9 7 4.9885 -2.8512 1.5912 10 6 6.3440 -2.6804 2.1312 11 6 7.1811 -3.8822 1.7767 12 6 7.2309 -4.9656 2.6346 13 6 7.9926 -6.0710 2.3101 14 6 8.7182 -6.0890 1.1257 15 7 9.4945 -7.2027 0.7973 16 6 10.2596 -7.2197 -0.4519 17 6 9.5436 -8.3539 1.7021 18 6 8.4494 -9.3247 1.3396 19 1 7.7838 -9.1058 0.5177 20 6 8.2974 -10.4918 2.0577 21 7 9.1076 -10.7581 3.0588 22 14 6.9407 -11.6949 1.6088 23 1 7.1311 -12.1563 0.2102 24 1 6.9905 -12.8618 2.5259 25 1 5.6223 -11.0229 1.7331 26 6 8.6704 -4.9967 0.2689 27 6 7.9026 -3.8967 0.5971 28 6 4.0771 -1.8170 2.1144 29 1 -0.3633 0.4523 0.9227 30 1 -0.3634 0.5729 -0.8531 31 1 -0.3632 -1.0253 -0.0696 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7042 1.8724 0.9233 35 1 1.4365 -1.6961 1.2391 36 1 1.8925 -0.1786 2.0500 37 1 2.8319 -2.8445 -0.2370 38 1 3.6962 -1.6127 -1.2166 39 1 5.8212 -2.1535 -0.2297 40 1 5.0569 -3.7701 -0.3184 41 1 6.7950 -1.7846 1.7042 42 1 6.2931 -2.5800 3.2154 43 1 6.6704 -4.9489 3.5577 44 1 8.0276 -6.9186 2.9785 45 1 11.2530 -6.8073 -0.2752 46 1 10.3504 -8.2457 -0.8084 47 1 9.7447 -6.6189 -1.2015 48 1 10.5115 -8.8468 1.6108 49 1 9.4036 -8.0155 2.7286 50 1 9.0010 -11.5793 3.5639 51 1 9.2337 -5.0073 -0.6525 52 1 7.8653 -3.0469 -0.0685 53 1 3.2831 -2.2832 2.6978 54 1 4.6314 -1.1149 2.7373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179636265.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:27 Heat of formation + Delta-G solvation = 27.420695 kcal Electronic energy + Delta-G solvation = -28235.376818 eV Core-core repulsion = 24592.234375 eV Total energy + Delta-G solvation = -3643.142443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.74362 -39.93338 -38.11439 -37.09228 -34.82569 -33.60798 -31.89142 -30.89520 -30.32469 -29.56529 -28.45756 -27.60228 -26.49932 -25.58623 -23.79680 -23.17689 -22.78861 -21.70398 -20.97376 -20.89766 -18.62613 -18.12133 -17.24826 -16.90457 -16.61919 -16.20317 -16.10984 -16.03012 -15.70738 -15.32827 -15.18571 -14.92596 -14.74697 -14.38086 -14.28069 -14.21727 -14.01399 -13.50978 -13.44175 -13.25414 -13.16503 -13.06805 -13.01251 -12.82251 -12.66803 -12.58439 -12.52865 -12.38756 -12.28478 -12.07243 -11.94653 -11.76437 -11.69910 -11.62046 -11.38062 -11.31353 -10.63496 -10.38863 -9.64109 -9.26100 -9.11938 -8.35149 -7.78137 -6.36625 0.73255 0.86373 1.36906 1.39309 1.47384 2.34755 2.64859 2.95032 3.03704 3.06634 3.41605 3.76248 3.80968 4.00863 4.07434 4.18221 4.23925 4.28791 4.34007 4.44853 4.47350 4.48517 4.52146 4.54103 4.61126 4.67044 4.71759 4.73906 4.76881 4.78179 4.85081 4.87295 4.90618 4.93445 5.02232 5.03648 5.04672 5.10997 5.14364 5.20130 5.21958 5.24715 5.34365 5.45797 5.60548 5.67823 5.71122 5.94531 6.08007 6.09519 6.12136 6.19897 6.20983 6.29066 6.51402 6.83558 6.95516 7.34948 8.83648 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.002248 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.082718 B =12454.460210 C =13366.212986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.559 5.559 3 C 0.023 3.977 4 C 0.070 3.930 5 C -0.093 4.093 6 H 0.080 0.920 7 C -0.102 4.102 8 C 0.045 3.955 9 N -0.542 5.542 10 C 0.111 3.889 11 C -0.152 4.152 12 C -0.058 4.058 13 C -0.216 4.216 14 C 0.211 3.789 15 N -0.632 5.632 16 C 0.099 3.901 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.961 3.039 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.274 1.274 26 C -0.216 4.216 27 C -0.060 4.060 28 C 0.048 3.952 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.267 0.733 51 H 0.132 0.868 52 H 0.137 0.863 53 H 0.073 0.927 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 25.432 -5.950 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.283 5.283 3 C -0.125 4.125 4 C -0.058 4.058 5 C -0.113 4.113 6 H 0.098 0.902 7 C -0.140 4.140 8 C -0.082 4.082 9 N -0.266 5.266 10 C -0.016 4.016 11 C -0.155 4.155 12 C -0.077 4.077 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.044 4.044 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.066 0.934 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.786 3.214 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.200 1.200 26 C -0.239 4.239 27 C -0.079 4.079 28 C -0.080 4.080 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.027 0.973 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.150 0.850 52 H 0.155 0.845 53 H 0.091 0.909 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.122 24.400 -6.134 27.928 hybrid contribution -0.327 -0.309 0.686 0.821 sum -12.450 24.092 -5.448 27.660 Atomic orbital electron populations 1.22402 0.86640 1.02474 1.00847 1.61941 1.08486 1.14464 1.43377 1.22445 1.01052 0.88258 1.00761 1.22052 0.94562 0.97951 0.91237 1.22278 0.95726 0.98287 0.94987 0.90197 1.22534 0.95897 0.97089 0.98531 1.23020 0.97717 0.99915 0.87549 1.63542 1.08460 1.47693 1.06943 1.20997 0.87170 0.93475 0.99974 1.19480 1.02364 0.97128 0.96541 1.20775 0.95823 0.91970 0.99132 1.20768 1.04276 1.00281 0.98573 1.18210 0.90247 0.87377 0.93500 1.46949 1.48936 1.15524 1.22613 1.21591 0.95116 1.01995 0.85732 1.18764 0.95324 0.82693 0.88730 1.21735 1.15685 1.04595 1.15931 0.93406 1.25785 0.98567 0.99671 0.94732 1.70030 1.39184 1.26413 1.20938 0.85566 0.79329 0.78133 0.78416 1.19326 1.20286 1.19967 1.20760 1.07557 0.94337 1.01222 1.20870 0.94406 0.97034 0.95603 1.22845 0.96106 0.92268 0.96804 0.95462 0.90677 0.91436 0.91223 0.90835 0.95489 0.91023 0.94196 0.91923 0.90309 0.92995 0.92440 0.93090 0.90134 0.86187 0.88811 0.92919 0.92576 0.90397 0.97251 0.97149 0.92395 0.84996 0.84509 0.90909 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.54 127.69 1.22 1.50 16 2 N -0.56 -7.71 4.86 -948.82 -4.61 -12.32 16 3 C 0.02 0.25 9.39 127.69 1.20 1.45 16 4 C 0.07 0.99 4.27 86.30 0.37 1.36 16 5 C -0.09 -1.42 2.95 -9.62 -0.03 -1.45 16 6 H 0.08 1.15 6.63 -2.39 -0.02 1.13 16 7 C -0.10 -1.86 6.42 31.98 0.21 -1.65 16 8 C 0.05 0.99 5.61 86.77 0.49 1.48 16 9 N -0.54 -12.54 5.15 -890.10 -4.59 -17.13 16 10 C 0.11 2.57 4.72 85.55 0.40 2.97 16 11 C -0.15 -4.56 5.10 -19.84 -0.10 -4.66 16 12 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 13 C -0.22 -9.40 9.21 22.40 0.21 -9.19 16 14 C 0.21 8.88 6.55 38.21 0.25 9.13 16 15 N -0.63 -28.39 2.99 -726.57 -2.17 -30.56 16 16 C 0.10 3.51 10.19 127.77 1.30 4.81 16 17 C 0.27 14.34 4.91 85.63 0.42 14.76 16 18 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.01 0.67 5.46 84.65 0.46 1.13 16 21 N -0.93 -55.21 13.29 21.45 0.28 -54.93 16 22 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 26 C -0.22 -7.31 9.21 22.40 0.21 -7.10 16 27 C -0.06 -1.74 8.91 22.25 0.20 -1.55 16 28 C 0.05 0.84 6.46 86.64 0.56 1.40 16 29 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.07 0.76 6.62 -2.38 -0.02 0.74 16 33 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 34 H 0.03 0.28 8.11 -2.39 -0.02 0.26 16 35 H 0.07 1.10 7.86 -2.39 -0.02 1.08 16 36 H 0.04 0.52 8.03 -2.38 -0.02 0.50 16 37 H 0.06 1.27 7.98 -2.39 -0.02 1.25 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.03 6.99 -2.39 -0.02 1.01 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.02 7.79 -2.39 -0.02 1.00 16 42 H 0.08 1.75 7.97 -2.39 -0.02 1.73 16 43 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.09 4.69 6.14 -2.91 -0.02 4.67 16 45 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 47 H 0.08 2.36 6.20 -2.39 -0.01 2.34 16 48 H 0.01 0.53 8.07 -2.39 -0.02 0.52 16 49 H 0.01 0.61 6.20 -2.39 -0.01 0.60 16 50 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 51 H 0.13 3.86 6.14 -2.91 -0.02 3.85 16 52 H 0.14 3.09 7.48 -2.91 -0.02 3.07 16 53 H 0.07 1.33 7.82 -2.39 -0.02 1.31 16 54 H 0.06 0.98 7.55 -2.39 -0.02 0.97 16 Total: -1.00 -65.18 417.84 -0.40 -65.58 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.84 Total: 20.62 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 7.81 Total: -18.30 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -11.09 Total: -114.94 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.18 -0.40 -65.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179636265.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.001 kcal (2) G-P(sol) polarization free energy of solvation -65.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds