Wall clock time and date at job start Tue Mar 31 2020 16:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.46997 * 329.99580 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46895 * 110.99680 * 58.95697 * 12 2 1 14 14 C 1.46896 * 111.00013 * 295.00378 * 12 2 1 15 15 C 1.53000 * 109.47052 * 189.99960 * 14 12 2 16 16 C 1.52998 * 109.47251 * 179.97438 * 15 14 12 17 17 N 1.46896 * 109.47635 * 179.97438 * 16 15 14 18 18 C 1.46956 * 110.99877 * 293.80587 * 17 16 15 19 19 C 1.53055 * 109.36640 * 176.81051 * 18 17 16 20 20 N 1.46955 * 109.36349 * 58.39498 * 19 18 17 21 21 C 1.39681 * 110.99460 * 176.81728 * 20 19 18 22 22 C 1.38907 * 120.07370 * 123.52629 * 21 20 19 23 23 C 1.38107 * 119.92639 * 179.76278 * 22 21 20 24 24 C 1.38289 * 120.06783 * 0.50962 * 23 22 21 25 25 C 1.38279 * 120.15385 * 359.73960 * 24 23 22 26 26 C 1.38103 * 120.07558 * 0.02562 * 25 24 23 27 27 C 1.46954 * 110.88051 * 300.68074 * 20 19 18 28 28 C 1.46950 * 111.00601 * 170.00230 * 17 16 15 29 29 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 31 31 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 32 32 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47549 * 60.00387 * 13 12 2 34 34 H 1.09003 * 109.47360 * 180.02562 * 13 12 2 35 35 H 1.08996 * 109.47605 * 299.99824 * 13 12 2 36 36 H 1.09001 * 109.47061 * 309.99578 * 14 12 2 37 37 H 1.08997 * 109.47526 * 69.99455 * 14 12 2 38 38 H 1.09001 * 109.46876 * 299.99732 * 15 14 12 39 39 H 1.09007 * 109.47299 * 59.99973 * 15 14 12 40 40 H 1.09001 * 109.47222 * 300.00612 * 16 15 14 41 41 H 1.09007 * 109.47225 * 59.99682 * 16 15 14 42 42 H 1.09006 * 109.48708 * 296.77526 * 18 17 16 43 43 H 1.08991 * 109.49455 * 56.83918 * 18 17 16 44 44 H 1.09007 * 109.48390 * 298.43232 * 19 18 17 45 45 H 1.08999 * 109.49131 * 178.36908 * 19 18 17 46 46 H 1.08002 * 120.03865 * 0.02562 * 22 21 20 47 47 H 1.07998 * 119.96666 * 180.24999 * 23 22 21 48 48 H 1.08001 * 119.92209 * 179.76825 * 24 23 22 49 49 H 1.08001 * 119.96417 * 180.02562 * 25 24 23 50 50 H 1.08003 * 120.04284 * 179.97438 * 26 25 24 51 51 H 1.08996 * 109.49093 * 299.35303 * 27 20 19 52 52 H 1.09007 * 109.48563 * 179.28853 * 27 20 19 53 53 H 1.09004 * 109.48748 * 303.15522 * 28 17 16 54 54 H 1.09001 * 109.49071 * 63.21553 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0761 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3789 -0.5663 3.6186 16 6 1.9930 0.1961 4.8877 17 7 2.6936 -0.3854 6.0405 18 6 2.2285 -1.7544 6.3036 19 6 3.0363 -2.3517 7.4583 20 7 2.8799 -1.5070 8.6506 21 6 3.5462 -2.0600 9.7466 22 6 4.5099 -1.3210 10.4208 23 6 5.1633 -1.8690 11.5071 24 6 4.8665 -3.1559 11.9173 25 6 3.9114 -3.8962 11.2452 26 6 3.2508 -3.3525 10.1612 27 6 3.3451 -0.1381 8.3873 28 6 2.5373 0.4592 7.2328 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 0.7081 1.1608 -3.4844 33 1 1.8764 -2.6150 0.3647 34 1 1.9054 -2.5656 2.1440 35 1 0.4386 -2.0743 1.2639 36 1 1.9297 1.0870 2.3125 37 1 0.5722 -0.0345 2.5726 38 1 2.0979 -1.6141 3.7241 39 1 3.4554 -0.4925 3.4641 40 1 2.2742 1.2439 4.7819 41 1 0.9165 0.1228 5.0425 42 1 1.1719 -1.7343 6.5712 43 1 2.3661 -2.3633 5.4103 44 1 4.0893 -2.3969 7.1801 45 1 2.6735 -3.3566 7.6743 46 1 4.7450 -0.3174 10.0984 47 1 5.9099 -1.2935 12.0342 48 1 5.3816 -3.5835 12.7648 49 1 3.6817 -4.9008 11.5685 50 1 2.5051 -3.9314 9.6364 51 1 4.4016 -0.1582 8.1198 52 1 3.2074 0.4709 9.2809 53 1 2.9002 1.4641 7.0167 54 1 1.4843 0.5045 7.5109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286423906.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:31 Heat of formation + Delta-G solvation = 34.985607 kcal Electronic energy + Delta-G solvation = -28190.936671 eV Core-core repulsion = 24548.122268 eV Total energy + Delta-G solvation = -3642.814404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.35637 -39.56676 -38.91036 -36.74340 -34.96243 -33.10108 -32.58368 -31.39741 -30.86328 -29.89492 -27.96330 -27.20832 -26.62132 -25.24226 -24.37398 -22.94047 -22.52571 -21.83571 -20.86996 -20.69145 -18.67355 -18.20597 -17.01702 -16.90222 -16.68961 -16.49412 -16.31964 -15.99757 -15.76902 -15.60269 -15.29493 -15.11991 -14.87236 -14.64093 -14.56067 -14.36485 -14.07335 -13.58629 -13.41961 -13.28746 -13.02407 -12.88447 -12.73883 -12.61886 -12.52142 -12.47872 -12.39963 -12.34395 -12.19619 -12.07569 -11.98560 -11.96018 -11.68843 -11.48935 -11.23928 -10.86252 -10.66515 -10.49060 -9.83845 -9.34867 -8.81852 -8.79750 -8.09963 -6.20655 0.47027 0.50594 1.42620 1.43689 1.54410 2.43513 2.62588 2.80551 2.98687 3.19142 3.47638 3.75675 3.88279 3.96442 4.04599 4.09859 4.21276 4.23579 4.29021 4.32228 4.40334 4.44033 4.47485 4.56239 4.59043 4.61745 4.65385 4.69348 4.71718 4.77367 4.77602 4.81343 4.85712 4.89317 4.90628 4.95460 5.01937 5.14257 5.14631 5.17221 5.30520 5.32462 5.42380 5.53129 5.55879 5.67914 5.72372 5.81593 5.83803 5.96489 6.04677 6.10080 6.21505 6.36364 6.50621 6.78976 6.93470 7.48593 8.96265 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.029658 B = 0.001765 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.855411 B =15856.265080 C =16246.007476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.547 5.547 13 C 0.040 3.960 14 C 0.060 3.940 15 C -0.094 4.094 16 C 0.067 3.933 17 N -0.546 5.546 18 C 0.055 3.945 19 C 0.068 3.932 20 N -0.499 5.499 21 C 0.097 3.903 22 C -0.183 4.183 23 C -0.102 4.102 24 C -0.155 4.155 25 C -0.102 4.102 26 C -0.155 4.155 27 C 0.058 3.942 28 C 0.057 3.943 29 H 0.031 0.969 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.261 0.739 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.014 0.986 36 H 0.056 0.944 37 H 0.023 0.977 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.094 0.906 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.127 0.873 51 H 0.051 0.949 52 H 0.096 0.904 53 H 0.094 0.906 54 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -5.986 29.736 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.270 5.270 13 C -0.109 4.109 14 C -0.069 4.069 15 C -0.132 4.132 16 C -0.061 4.061 17 N -0.271 5.271 18 C -0.073 4.073 19 C -0.058 4.058 20 N -0.215 5.215 21 C -0.001 4.001 22 C -0.204 4.204 23 C -0.120 4.120 24 C -0.174 4.174 25 C -0.120 4.120 26 C -0.175 4.175 27 C -0.069 4.069 28 C -0.071 4.071 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.113 0.887 46 H 0.151 0.849 47 H 0.157 0.843 48 H 0.158 0.842 49 H 0.159 0.841 50 H 0.145 0.855 51 H 0.070 0.930 52 H 0.114 0.886 53 H 0.113 0.887 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.425 -5.852 29.488 30.549 hybrid contribution -1.038 0.017 -1.159 1.555 sum 4.387 -5.834 28.329 29.255 Atomic orbital electron populations 1.22182 1.00410 0.99084 0.99921 1.19072 0.89971 0.92923 0.87442 0.97767 1.21405 1.30512 1.12420 0.90950 0.92476 1.25714 0.95486 0.95843 1.01895 1.70018 1.37962 1.24214 1.23948 0.85529 0.78798 0.78208 0.78916 1.20170 1.21005 1.19435 1.62217 1.59822 1.02805 1.02167 1.22215 0.96825 0.90342 1.01483 1.21987 0.96796 0.97744 0.90385 1.21416 1.00709 0.99338 0.91729 1.21954 0.95663 0.99057 0.89425 1.62140 1.57422 1.02645 1.04901 1.22231 0.96985 0.90185 0.97942 1.22258 0.99335 0.96579 0.87619 1.59302 1.53835 1.03834 1.04485 1.19163 0.92604 0.94290 0.94010 1.21524 0.97410 1.01832 0.99624 1.21318 0.99024 0.95813 0.95845 1.21402 0.99558 0.94948 1.01510 1.21312 0.95562 1.00561 0.94586 1.20990 1.02303 0.94684 0.99524 1.22338 0.97885 0.88219 0.98428 1.22216 0.98825 0.97223 0.88884 0.95010 0.95661 0.92126 0.93030 0.92830 0.90796 0.96763 0.92558 0.95924 0.91709 0.91707 0.90249 0.94822 0.94313 0.89392 0.93821 0.88747 0.84910 0.84271 0.84250 0.84081 0.85487 0.93031 0.88565 0.88739 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.28 71.98 0.60 -7.09 16 2 C 0.21 10.96 2.34 44.17 0.10 11.06 16 3 H 0.00 0.25 8.03 -2.38 -0.02 0.23 16 4 C -0.51 -28.57 7.94 25.60 0.20 -28.37 16 5 H 0.06 3.17 6.75 -2.91 -0.02 3.15 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.55 -23.39 4.74 -901.49 -4.27 -27.66 16 13 C 0.04 1.52 8.70 127.69 1.11 2.63 16 14 C 0.06 2.09 4.40 86.30 0.38 2.47 16 15 C -0.09 -2.59 5.08 30.59 0.16 -2.43 16 16 C 0.07 1.54 4.96 86.30 0.43 1.96 16 17 N -0.55 -11.47 4.71 -895.73 -4.22 -15.69 16 18 C 0.05 1.08 5.41 86.31 0.47 1.54 16 19 C 0.07 1.23 5.38 86.31 0.46 1.69 16 20 N -0.50 -9.21 4.76 -694.78 -3.30 -12.52 16 21 C 0.10 1.76 5.64 38.21 0.22 1.97 16 22 C -0.18 -2.98 8.82 22.40 0.20 -2.78 16 23 C -0.10 -1.40 10.04 22.25 0.22 -1.18 16 24 C -0.16 -2.02 10.04 22.29 0.22 -1.79 16 25 C -0.10 -1.40 10.04 22.25 0.22 -1.18 16 26 C -0.15 -2.57 9.19 22.40 0.21 -2.36 16 27 C 0.06 0.97 4.29 86.31 0.37 1.34 16 28 C 0.06 1.00 5.61 86.31 0.48 1.49 16 29 H 0.03 1.50 6.39 -2.38 -0.02 1.48 16 30 H 0.02 1.10 6.75 -2.39 -0.02 1.08 16 31 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 32 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 33 H 0.05 2.23 6.53 -2.39 -0.02 2.21 16 34 H 0.07 2.34 6.30 -2.39 -0.02 2.32 16 35 H 0.01 0.54 6.28 -2.39 -0.02 0.52 16 36 H 0.06 2.04 8.00 -2.39 -0.02 2.02 16 37 H 0.02 0.79 6.94 -2.39 -0.02 0.78 16 38 H 0.06 1.72 4.82 -2.39 -0.01 1.70 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.08 1.77 8.03 -2.39 -0.02 1.75 16 41 H 0.03 0.77 8.12 -2.38 -0.02 0.75 16 42 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.09 1.75 6.34 -2.39 -0.02 1.73 16 44 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.09 1.49 6.82 -2.39 -0.02 1.48 16 46 H 0.13 1.86 5.81 -2.91 -0.02 1.84 16 47 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 48 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 50 H 0.13 1.90 7.19 -2.91 -0.02 1.88 16 51 H 0.05 0.90 7.57 -2.39 -0.02 0.88 16 52 H 0.10 1.35 7.18 -2.38 -0.02 1.33 16 53 H 0.09 1.47 8.07 -2.38 -0.02 1.45 16 54 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -62.54 400.87 -2.17 -64.71 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.86 Total: 18.33 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 6.50 Total: -20.09 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -11.55 Total: -109.03 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.54 -2.17 -64.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286423906.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.695 kcal (2) G-P(sol) polarization free energy of solvation -62.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds