Wall clock time and date at job start Tue Mar 31 2020 16:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 110.99847 * 2 1 4 4 C 1.52999 * 109.46940 * 66.04335 * 3 2 1 5 5 C 1.53005 * 109.47230 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47213 * 180.02562 * 5 4 3 7 7 C 1.46959 * 110.99714 * 46.17934 * 6 5 4 8 8 C 1.53054 * 109.36037 * 183.16860 * 7 6 5 9 9 N 1.46963 * 109.38110 * 301.62804 * 8 7 6 10 10 C 1.46896 * 110.99910 * 183.17976 * 9 8 7 11 11 C 1.46954 * 110.87720 * 59.31218 * 9 8 7 12 12 C 1.46951 * 110.99993 * 170.00100 * 6 5 4 13 13 C 1.46893 * 111.00332 * 236.05095 * 2 1 3 14 14 C 1.50704 * 109.46819 * 293.95056 * 13 2 1 15 15 C 1.38640 * 119.74996 * 269.73090 * 14 13 2 16 16 C 1.37612 * 120.24872 * 179.72144 * 15 14 13 17 17 C 1.40722 * 119.74626 * 0.56798 * 16 15 14 18 18 C 1.41393 * 120.24716 * 179.68153 * 17 16 15 19 19 H 1.08000 * 119.99927 * 155.30810 * 18 17 16 20 20 C 1.39946 * 119.99960 * 335.31375 * 18 17 16 21 21 N 1.30823 * 119.99830 * 342.22822 * 20 18 17 22 22 Si 1.86797 * 120.00196 * 162.23334 * 20 18 17 23 23 H 1.48493 * 109.47246 * 94.66113 * 22 20 18 24 24 H 1.48500 * 109.47028 * 214.66681 * 22 20 18 25 25 H 1.48504 * 109.46915 * 334.65917 * 22 20 18 26 26 C 1.40716 * 119.50631 * 359.70648 * 17 16 15 27 27 C 1.37614 * 119.75117 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.47445 * 59.99904 * 1 2 3 29 29 H 1.09004 * 109.46987 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47583 * 299.99596 * 1 2 3 31 31 H 1.09003 * 109.47416 * 306.04805 * 3 2 1 32 32 H 1.08991 * 109.47565 * 186.04239 * 3 2 1 33 33 H 1.09005 * 109.47093 * 60.00338 * 4 3 2 34 34 H 1.08999 * 109.47548 * 300.00297 * 4 3 2 35 35 H 1.09005 * 109.46811 * 60.00160 * 5 4 3 36 36 H 1.08999 * 109.47093 * 300.00570 * 5 4 3 37 37 H 1.08995 * 109.46937 * 63.21195 * 7 6 5 38 38 H 1.08995 * 109.50888 * 303.14101 * 7 6 5 39 39 H 1.09005 * 109.48841 * 181.66047 * 8 7 6 40 40 H 1.08999 * 109.49236 * 61.61123 * 8 7 6 41 41 H 1.08999 * 109.47173 * 60.00045 * 10 9 8 42 42 H 1.08999 * 109.47500 * 180.02562 * 10 9 8 43 43 H 1.09001 * 109.47248 * 300.00444 * 10 9 8 44 44 H 1.09002 * 109.48839 * 60.64523 * 11 9 8 45 45 H 1.09000 * 109.48835 * 180.68321 * 11 9 8 46 46 H 1.09006 * 109.48959 * 56.84391 * 12 6 5 47 47 H 1.08998 * 109.49375 * 296.78013 * 12 6 5 48 48 H 1.08997 * 109.47543 * 53.94967 * 13 2 1 49 49 H 1.09004 * 109.47690 * 173.95381 * 13 2 1 50 50 H 1.08008 * 119.87415 * 359.97226 * 15 14 13 51 51 H 1.08003 * 120.12849 * 180.27316 * 16 15 14 52 52 H 0.97009 * 120.00056 * 179.97438 * 21 20 18 53 53 H 1.08001 * 120.12547 * 179.97438 * 26 17 16 54 54 H 1.07997 * 119.88124 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 1.3182 5 6 2.1790 3.4861 1.3181 6 7 1.8299 4.1445 2.5840 7 6 2.1093 3.2664 3.7287 8 6 1.6597 3.9562 5.0189 9 7 2.3645 5.2384 5.1575 10 6 2.0154 5.8968 6.4234 11 6 2.0847 6.1162 4.0127 12 6 2.5346 5.4266 2.7225 13 6 1.9954 -0.7658 -1.1376 14 6 1.6370 -2.2203 -0.9729 15 6 2.5029 -3.0706 -0.3026 16 6 2.1832 -4.3993 -0.1413 17 6 0.9777 -4.8966 -0.6701 18 6 0.6418 -6.2614 -0.5164 19 1 -0.3930 -6.5694 -0.5452 20 6 1.6502 -7.2131 -0.3268 21 7 2.8889 -6.9231 -0.6315 22 14 1.2274 -8.8975 0.3611 23 1 1.0181 -9.8510 -0.7579 24 1 2.3419 -9.3764 1.2177 25 1 -0.0141 -8.8042 1.1706 26 6 0.1092 -4.0255 -1.3536 27 6 0.4462 -2.6990 -1.4972 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.5610 1.9275 -0.8309 32 1 3.0796 1.3446 -0.1082 33 1 2.0657 1.5016 2.1492 34 1 0.5470 2.0844 1.4265 35 1 1.7442 4.0418 0.4871 36 1 3.2632 3.4596 1.2096 37 1 3.1790 3.0636 3.7785 38 1 1.5661 2.3290 3.6094 39 1 1.8928 3.3192 5.8722 40 1 0.5850 4.1342 4.9808 41 1 2.2947 5.2526 7.2571 42 1 2.5503 6.8434 6.5003 43 1 0.9419 6.0831 6.4522 44 1 1.0148 6.3188 3.9626 45 1 2.6271 7.0540 4.1324 46 1 2.3016 6.0637 1.8693 47 1 3.6093 5.2487 2.7611 48 1 1.5611 -0.3871 -2.0628 49 1 3.0797 -0.6610 -1.1756 50 1 3.4300 -2.6879 0.0980 51 1 2.8572 -5.0591 0.3850 52 1 3.5880 -7.5827 -0.4998 53 1 -0.8184 -4.3966 -1.7638 54 1 -0.2186 -2.0287 -2.0217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343725465.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:14 Heat of formation + Delta-G solvation = 16.166638 kcal Electronic energy + Delta-G solvation = -27801.637444 eV Core-core repulsion = 24158.006988 eV Total energy + Delta-G solvation = -3643.630455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 331.232 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.41090 -39.81950 -38.31059 -36.76254 -35.50878 -33.24949 -31.99835 -31.65398 -31.08178 -29.22529 -28.69842 -27.16610 -25.66801 -24.90934 -24.22391 -22.88773 -22.82460 -21.51127 -21.34362 -20.67721 -19.19832 -17.40421 -17.18315 -16.76659 -16.38902 -16.29912 -16.07154 -15.93803 -15.78009 -15.70278 -15.59620 -15.12354 -15.03203 -14.57642 -14.41576 -14.11562 -13.78339 -13.49120 -13.35432 -13.25765 -13.18436 -13.03017 -12.78204 -12.73484 -12.65626 -12.49113 -12.36919 -12.34510 -12.24720 -12.09660 -11.97441 -11.67637 -11.65270 -11.39442 -11.32479 -11.20011 -10.97990 -9.43013 -9.31283 -9.28159 -9.24661 -9.03209 -8.62066 -6.30749 0.97176 1.17817 1.37805 1.48667 1.54256 2.21450 2.67435 2.85891 2.97916 3.25700 3.81261 3.88814 3.99136 4.02122 4.09530 4.21128 4.23302 4.29452 4.36056 4.37845 4.46507 4.51250 4.55828 4.57761 4.60924 4.61882 4.65478 4.66945 4.69826 4.79708 4.82599 4.85102 4.88646 4.90022 4.99690 5.03969 5.04781 5.08585 5.13413 5.18109 5.25716 5.33726 5.41121 5.49585 5.73916 5.94341 5.96320 5.97732 6.12129 6.13774 6.16487 6.17303 6.32677 6.36310 6.42127 6.73868 6.96843 7.07242 8.35187 Molecular weight = 331.23amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.001837 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.095393 B =15238.157985 C =16098.158885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.060 3.940 4 C -0.107 4.107 5 C 0.065 3.935 6 N -0.547 5.547 7 C 0.053 3.947 8 C 0.059 3.941 9 N -0.560 5.560 10 C 0.026 3.974 11 C 0.059 3.941 12 C 0.057 3.943 13 C 0.126 3.874 14 C -0.193 4.193 15 C -0.086 4.086 16 C -0.191 4.191 17 C 0.078 3.922 18 C -0.503 4.503 19 H 0.073 0.927 20 C 0.034 3.966 21 N -0.827 5.827 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.260 1.260 26 C -0.243 4.243 27 C -0.081 4.081 28 H 0.028 0.972 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.035 0.965 48 H 0.035 0.965 49 H 0.073 0.927 50 H 0.101 0.899 51 H 0.097 0.903 52 H 0.287 0.713 53 H 0.094 0.906 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 24.130 8.278 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.273 5.273 3 C -0.068 4.068 4 C -0.145 4.145 5 C -0.063 4.063 6 N -0.272 5.272 7 C -0.075 4.075 8 C -0.069 4.069 9 N -0.285 5.285 10 C -0.122 4.122 11 C -0.069 4.069 12 C -0.072 4.072 13 C -0.001 4.001 14 C -0.194 4.194 15 C -0.105 4.105 16 C -0.211 4.211 17 C 0.076 3.924 18 C -0.533 4.533 19 H 0.091 0.909 20 C -0.180 4.180 21 N -0.453 5.453 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.190 1.190 25 H -0.184 1.184 26 C -0.263 4.263 27 C -0.100 4.100 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.091 0.909 50 H 0.119 0.881 51 H 0.115 0.885 52 H 0.098 0.902 53 H 0.112 0.888 54 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.296 23.831 8.687 25.367 hybrid contribution -0.326 -0.786 -0.576 1.027 sum -0.029 23.045 8.111 24.431 Atomic orbital electron populations 1.22374 0.87470 1.01684 1.00498 1.61962 1.08333 1.13406 1.43646 1.22069 1.00062 0.87573 0.97107 1.21600 1.01517 0.94145 0.97274 1.22018 0.98283 0.94243 0.91789 1.62242 1.58080 1.04655 1.02262 1.22239 0.99076 0.96370 0.89839 1.22161 0.96030 0.91138 0.97611 1.62195 1.58214 1.04788 1.03333 1.22379 0.98946 0.99966 0.90913 1.22183 0.99390 0.95943 0.89430 1.22198 0.95987 0.90872 0.98094 1.20647 0.99143 0.89519 0.90800 1.19283 0.96994 0.94960 1.08213 1.20709 0.98251 0.93161 0.98350 1.21254 0.99791 0.94740 1.05309 1.17966 0.92042 0.93581 0.88830 1.19815 0.94583 0.92453 1.46428 0.90897 1.26749 0.94068 1.04754 0.92435 1.69887 1.02479 1.37713 1.35213 0.85225 0.79286 0.76307 0.79071 1.18668 1.19018 1.18368 1.21138 1.02108 0.95044 1.07989 1.20630 0.95950 0.94384 0.98994 0.95373 0.92710 0.90767 0.94301 0.90871 0.91849 0.91519 0.89907 0.94675 0.94996 0.89674 0.89711 0.94564 0.90906 0.90370 0.95523 0.94527 0.88925 0.89049 0.94666 0.94713 0.90891 0.88089 0.88499 0.90233 0.88793 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 8.96 127.69 1.14 1.94 16 2 N -0.55 -16.38 4.75 -927.06 -4.41 -20.79 16 3 C 0.06 1.37 4.96 86.30 0.43 1.79 16 4 C -0.11 -2.19 4.40 30.60 0.13 -2.05 16 5 C 0.06 1.12 5.28 86.31 0.46 1.58 16 6 N -0.55 -9.92 4.86 -895.72 -4.35 -14.27 16 7 C 0.05 0.99 4.93 86.31 0.43 1.42 16 8 C 0.06 1.00 5.62 86.31 0.49 1.49 16 9 N -0.56 -9.06 4.97 -921.93 -4.58 -13.64 16 10 C 0.03 0.31 9.60 127.69 1.23 1.54 16 11 C 0.06 0.84 5.62 86.31 0.49 1.33 16 12 C 0.06 0.87 5.58 86.31 0.48 1.35 16 13 C 0.13 4.17 5.11 85.56 0.44 4.60 16 14 C -0.19 -8.16 4.91 -19.67 -0.10 -8.26 16 15 C -0.09 -4.07 9.67 22.22 0.21 -3.85 16 16 C -0.19 -10.40 8.70 22.73 0.20 -10.20 16 17 C 0.08 4.35 5.57 -21.29 -0.12 4.23 16 18 C -0.50 -28.02 9.05 23.46 0.21 -27.80 16 19 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 20 C 0.03 1.79 5.14 85.26 0.44 2.22 16 21 N -0.83 -44.43 10.97 21.83 0.24 -44.19 16 22 Si 0.98 39.20 29.59 68.60 2.03 41.23 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 26 C -0.24 -12.20 9.80 22.73 0.22 -11.98 16 27 C -0.08 -3.53 7.86 22.22 0.17 -3.36 16 28 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 1.86 5.88 -2.39 -0.01 1.84 16 30 H 0.07 1.89 6.47 -2.39 -0.02 1.87 16 31 H 0.04 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.07 1.62 7.93 -2.39 -0.02 1.60 16 33 H 0.06 1.45 6.26 -2.38 -0.01 1.43 16 34 H 0.07 1.43 6.55 -2.39 -0.02 1.41 16 35 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 37 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.09 1.67 5.99 -2.39 -0.01 1.65 16 39 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 43 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 46 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 48 H 0.03 1.08 8.06 -2.39 -0.02 1.06 16 49 H 0.07 2.30 7.87 -2.39 -0.02 2.28 16 50 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 51 H 0.10 5.53 6.18 -2.91 -0.02 5.52 16 52 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 53 H 0.09 4.49 8.06 -2.91 -0.02 4.46 16 54 H 0.11 4.16 7.97 -2.91 -0.02 4.13 16 Total: -1.00 -60.88 412.58 -3.28 -64.16 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.84 Total: 31.51 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 6.95 Total: -44.02 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -13.10 Total: -92.88 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -60.88 -3.28 -64.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343725465.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.330 kcal (2) G-P(sol) polarization free energy of solvation -60.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds